Disruption of the TP53 locus in osteosarcoma leads to TP53 promoter gene fusions and restoration of parts of the TP53 signalling pathway.

TP53 intron 1 TP53 mutation TP53 promoter TP53 signalling pathway gene fusion osteosarcoma p53 promoter swapping separation-of-function mutation

Journal

The Journal of pathology
ISSN: 1096-9896
Titre abrégé: J Pathol
Pays: England
ID NLM: 0204634

Informations de publication

Date de publication:
27 Nov 2023
Historique:
revised: 24 08 2023
received: 24 04 2023
accepted: 19 09 2023
medline: 27 11 2023
pubmed: 27 11 2023
entrez: 27 11 2023
Statut: aheadofprint

Résumé

TP53 is the most frequently mutated gene in human cancer. This gene shows not only loss-of-function mutations but also recurrent missense mutations with gain-of-function activity. We have studied the primary bone malignancy osteosarcoma, which harbours one of the most rearranged genomes of all cancers. This is odd since it primarily affects children and adolescents who have not lived the long life thought necessary to accumulate massive numbers of mutations. In osteosarcoma, TP53 is often disrupted by structural variants. Here, we show through combined whole-genome and transcriptome analyses of 148 osteosarcomas that TP53 structural variants commonly result in loss of coding parts of the gene while simultaneously preserving and relocating the promoter region. The transferred TP53 promoter region is fused to genes previously implicated in cancer development. Paradoxically, these erroneously upregulated genes are significantly associated with the TP53 signalling pathway itself. This suggests that while the classical tumour suppressor activities of TP53 are lost, certain parts of the TP53 signalling pathway that are necessary for cancer cell survival and proliferation are retained. In line with this, our data suggest that transposition of the TP53 promoter is an early event that allows for a new normal state of genome-wide rearrangements in osteosarcoma. © 2023 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.

Identifiants

pubmed: 38010733
doi: 10.1002/path.6219
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Swiss National Science Foundation
Pays : Switzerland

Informations de copyright

© 2023 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.

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Auteurs

Karim H Saba (KH)

Department of Laboratory Medicine, Division of Clinical Genetics, Lund University, Lund, Sweden.

Valeria Difilippo (V)

Department of Laboratory Medicine, Division of Clinical Genetics, Lund University, Lund, Sweden.

Michal Kovac (M)

Bone Tumour Reference Centre at the Institute of Pathology, University Hospital and University of Basel, Basel, Switzerland.
Faculty of Informatics and Information Technologies, Slovak University of Technology, Bratislava, Slovakia.

Louise Cornmark (L)

Department of Laboratory Medicine, Division of Clinical Genetics, Lund University, Lund, Sweden.

Linda Magnusson (L)

Department of Laboratory Medicine, Division of Clinical Genetics, Lund University, Lund, Sweden.

Jenny Nilsson (J)

Department of Laboratory Medicine, Division of Clinical Genetics, Lund University, Lund, Sweden.

Hilda van den Bos (H)

European Research Institute for the Biology of Ageing, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands.

Diana Cj Spierings (DC)

European Research Institute for the Biology of Ageing, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands.

Mahtab Bidgoli (M)

Department of Clinical Genetics and Pathology, Laboratory Medicine, Medical Services, Skåne University Hospital, Lund, Sweden.

Tord Jonson (T)

Department of Clinical Genetics and Pathology, Laboratory Medicine, Medical Services, Skåne University Hospital, Lund, Sweden.

Vaiyapuri P Sumathi (VP)

Department of Musculoskeletal Pathology, Royal Orthopaedic Hospital, Birmingham, UK.

Otte Brosjö (O)

Department of Orthopedics, Karolinska University Hospital, Stockholm, Sweden.

Johan Staaf (J)

Department of Clinical Sciences, Division of Oncology and Pathology, Lund University, Lund, Sweden.

Floris Foijer (F)

European Research Institute for the Biology of Ageing, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands.

Emelie Styring (E)

Department of Orthopedics, Lund University, Skåne University Hospital, Lund, Sweden.

Michaela Nathrath (M)

Children's Cancer Research Centre and Department of Pediatrics, Klinikum rechts der Isar, Technische Universität München, Munich, Germany.
Department of Pediatric Oncology, Klinikum Kassel, Kassel, Germany.

Daniel Baumhoer (D)

Bone Tumour Reference Centre at the Institute of Pathology, University Hospital and University of Basel, Basel, Switzerland.

Karolin H Nord (KH)

Department of Laboratory Medicine, Division of Clinical Genetics, Lund University, Lund, Sweden.

Classifications MeSH