Johan Staaf

Affiliations
  • Division of Oncology and Pathology, Department of Clinical Sciences Lund and CREATE Health Strategic Center for Translational Cancer Research, Lund University, Lund 22381, Sweden.

Publications (54)

Epigenome-wide gene-age interaction analysis reveals reversed effects of

Aging
Avec: Chao Chen , Yongyue Wei , Liangmin Wei , Jiajin Chen , Xin Chen , Xuesi Dong , Jieyu He , Lijuan Lin , Ying Zhu , Hui Huang , Dongfang You , Linjing Lai , Sipeng Shen , Weiwei Duan , Li Su , Andrea Shafer , Thomas Fleischer , Maria Moksnes Bjaanæs , Anna Karlsson , Maria Planck , Rui Wang , Johan Staaf , Åslaug Helland , Manel Esteller , Ruyang Zhang , Feng Chen , David C Christiani

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study.

Nature medicine
Avec: Johan Staaf , Dominik Glodzik , Ana Bosch , Johan Vallon-Christersson , Christel Reuterswärd , Jari Häkkinen , Andrea Degasperi , Tauanne Dias Amarante , Lao H Saal , Cecilia Hegardt , Hilary Stobart , Anna Ehinger , Christer Larsson , Lisa Rydén , Niklas Loman , Martin Malmberg , Anders Kvist , Hans Ehrencrona , Helen R Davies , Åke Borg , Serena Nik-Zainal

Clinical Application of Fusion Gene Detection Using Next-Generation Sequencing and the NanoString Technology.

Methods in molecular biology (Clifton, N.J.)
Avec: Anna Karlsson , Johan Staaf

Complement inhibitor CSMD1 modulates epidermal growth factor receptor oncogenic signaling and sensitizes breast cancer cells to chemotherapy.

Journal of experimental & clinical cancer research : CR
Avec: Chrysostomi Gialeli , Emre Can Tuysuz , Johan Staaf , Safia Guleed , Veronika Paciorek , Matthias Mörgelin , Konstantinos S Papadakos , Anna M Blom

An Open-Source, Automated Tumor-Infiltrating Lymphocyte Algorithm for Prognosis in Triple-Negative Breast Cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research
Avec: Yalai Bai , Kimberly Cole , Sandra Martinez-Morilla , Fahad Shabbir Ahmed , Jon Zugazagoitia , Johan Staaf , Ana Bosch , Anna Ehinger , Emma Nimeus , Johan Hartman , Balazs Acs , David L Rimm

SRIQ clustering: A fusion of Random Forest, QT clustering, and KNN concepts.

Computational and structural biotechnology journal
Avec: Jacob Karlström , Mattias Aine , Johan Staaf , Srinivas Veerla

Disruption of the TP53 locus in osteosarcoma leads to TP53 promoter gene fusions and restoration of parts of the TP53 signalling pathway.

The Journal of pathology
Avec: Karim H Saba , Valeria Difilippo , Michal Kovac , Louise Cornmark , Linda Magnusson , Jenny Nilsson , Hilda van den Bos , Diana Cj Spierings , Mahtab Bidgoli , Tord Jonson , Vaiyapuri P Sumathi , Otte Brosjö , Johan Staaf , Floris Foijer , Emelie Styring , Michaela Nathrath , Daniel Baumhoer , Karolin H Nord

Tumor purity adjusted beta values improve biological interpretability of high-dimensional DNA methylation data.

PloS one
Avec: Johan Staaf , Mattias Aine

Kataegis in clinical and molecular subgroups of primary breast cancer.

NPJ breast cancer
Avec: Srinivas Veerla , Johan Staaf

Performance of gene expression-based single sample predictors for assessment of clinicopathological subgroups and molecular subtypes in cancers: a case comparison study in non-small cell lung cancer.

Briefings in bioinformatics
Avec: Helena Cirenajwis , Martin Lauss , Maria Planck , Johan Vallon-Christersson , Johan Staaf

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature
Avec: Serena Nik-Zainal , Helen Davies , Johan Staaf , Manasa Ramakrishna , Dominik Glodzik , Xueqing Zou , Inigo Martincorena , Ludmil B Alexandrov , Sancha Martin , David C Wedge , Peter Van Loo , Young Seok Ju , Marcel Smid , Arie B Brinkman , Sandro Morganella , Miriam R Aure , Ole Christian Lingjærde , Anita Langerød , Markus Ringnér , Sung-Min Ahn , Sandrine Boyault , Jane E Brock , Annegien Broeks , Adam Butler , Christine Desmedt , Luc Dirix , Serge Dronov , Aquila Fatima , John A Foekens , Moritz Gerstung , Gerrit K J Hooijer , Se Jin Jang , David R Jones , Hyung-Yong Kim , Tari A King , Savitri Krishnamurthy , Hee Jin Lee , Jeong-Yeon Lee , Yilong Li , Stuart McLaren , Andrew Menzies , Ville Mustonen , Sarah O'Meara , Iris Pauporté , Xavier Pivot , Colin A Purdie , Keiran Raine , Kamna Ramakrishnan , F Germán Rodríguez-González , Gilles Romieu , Anieta M Sieuwerts , Peter T Simpson , Rebecca Shepherd , Lucy Stebbings , Olafur A Stefansson , Jon Teague , Stefania Tommasi , Isabelle Treilleux , Gert G Van den Eynden , Peter Vermeulen , Anne Vincent-Salomon , Lucy Yates , Carlos Caldas , Laura Van't Veer , Andrew Tutt , Stian Knappskog , Benita Kiat Tee Tan , Jos Jonkers , Åke Borg , Naoto T Ueno , Christos Sotiriou , Alain Viari , P Andrew Futreal , Peter J Campbell , Paul N Span , Steven Van Laere , Sunil R Lakhani , Jorunn E Eyfjord , Alastair M Thompson , Ewan Birney , Hendrik G Stunnenberg , Marc J van de Vijver , John W M Martens , Anne-Lise Børresen-Dale , Andrea L Richardson , Gu Kong , Gilles Thomas , Michael R Stratton

A gene expression-based single sample predictor of lung adenocarcinoma molecular subtype and prognosis.

International journal of cancer
Avec: Helena Liljedahl , Anna Karlsson , Gudrun N Oskarsdottir , Annette Salomonsson , Hans Brunnström , Gigja Erlingsdottir , Mats Jönsson , Sofi Isaksson , Elsa Arbajian , Cristian Ortiz-Villalón , Aziz Hussein , Bengt Bergman , Anders Vikström , Nastaran Monsef , Eva Branden , Hirsh Koyi , Luigi de Petris , Annika Patthey , Annelie F Behndig , Mikael Johansson , Maria Planck , Johan Staaf

Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers.

Nature communications
Avec: Dominik Glodzik , Ana Bosch , Johan Hartman , Mattias Aine , Johan Vallon-Christersson , Christel Reuterswärd , Anna Karlsson , Shamik Mitra , Emma Niméus , Karolina Holm , Jari Häkkinen , Cecilia Hegardt , Lao H Saal , Christer Larsson , Martin Malmberg , Lisa Rydén , Anna Ehinger , Niklas Loman , Anders Kvist , Hans Ehrencrona , Serena Nik-Zainal , Åke Borg , Johan Staaf

Random Forest Modelling of High-Dimensional Mixed-Type Data for Breast Cancer Classification.

Cancers
Avec: Jelmar Quist , Lawson Taylor , Johan Staaf , Anita Grigoriadis

Molecular analyses of triple-negative breast cancer in the young and elderly.

Breast cancer research : BCR
Avec: Mattias Aine , Ceren Boyaci , Johan Hartman , Jari Häkkinen , Shamik Mitra , Ana Bosch Campos , Emma Nimeus , Anna Ehinger , Johan Vallon-Christersson , Åke Borg , Johan Staaf

Epigenome-wide three-way interaction study identifies a complex pattern between TRIM27, KIAA0226, and smoking associated with overall survival of early-stage NSCLC.

Molecular oncology
Avec: Xinyu Ji , Lijuan Lin , Juanjuan Fan , Yi Li , Yongyue Wei , Sipeng Shen , Li Su , Andrea Shafer , Maria Moksnes Bjaanaes , Anna Karlsson , Maria Planck , Johan Staaf , Åslaug Helland , Manel Esteller , Ruyang Zhang , Feng Chen , David C Christiani

A 14-gene B-cell immune signature in early-stage triple-negative breast cancer (TNBC): a pooled analysis of seven studies.

EBioMedicine
Avec: Benedetta Conte , Fara Brasó-Maristany , Adela Rodríguez Hernández , Tomás Pascual , Guillermo Villacampa , Francesco Schettini , Maria J Vidal Losada , Elia Seguí , Laura Angelats , Isabel Garcia-Fructuoso , Raquel Gómez-Bravo , Natàlia Lorman-Carbó , Laia Paré , Mercedes Marín-Aguilera , Olga Martínez-Sáez , Barbara Adamo , Esther Sanfeliu , Beatrice Fratini , Claudette Falato , Núria Chic , Ana Vivancos , Patricia Villagrasa , Johan Staaf , Joel S Parker , Charles M Perou , Aleix Prat

Genomic alterations associated with resistance and circulating tumor DNA dynamics for early detection of progression on CDK4/6 inhibitor in advanced breast cancer.

International journal of cancer
Avec: Charlotte K Kindt , Carla L Alves , Sidse Ehmsen , Amalie Kragh , Thomas Reinert , Marianne Vogsen , Annette R Kodahl , Jeanette D Rønlev , Dilan Ardik , Anna L Sørensen , Kirstine Evald , Mia L Clemmensen , Johan Staaf , Henrik J Ditzel

Loss of NF2 defines a genetic subgroup of non-FOS-rearranged osteoblastoma.

The journal of pathology. Clinical research
Avec: Karim H Saba , Louise Cornmark , Jakob Hofvander , Linda Magnusson , Jenny Nilsson , Hilda van den Bos , Diana Cj Spierings , Floris Foijer , Johan Staaf , Otte Brosjö , Vaiyapuri P Sumathi , Suk Wai Lam , Karoly Szuhai , Judith Vmg Bovée , Michal Kovac , Daniel Baumhoer , Emelie Styring , Karolin H Nord

Independent Validation of Early-Stage Non-Small Cell Lung Cancer Prognostic Scores Incorporating Epigenetic and Transcriptional Biomarkers With Gene-Gene Interactions and Main Effects.

Chest
Avec: Ruyang Zhang , Chao Chen , Xuesi Dong , Sipeng Shen , Linjing Lai , Jieyu He , Dongfang You , Lijuan Lin , Ying Zhu , Hui Huang , Jiajin Chen , Liangmin Wei , Xin Chen , Yi Li , Yichen Guo , Weiwei Duan , Liya Liu , Li Su , Andrea Shafer , Thomas Fleischer , Maria Moksnes Bjaanæs , Anna Karlsson , Maria Planck , Rui Wang , Johan Staaf , Åslaug Helland , Manel Esteller , Yongyue Wei , Feng Chen , David C Christiani

A combined gene expression tool for parallel histological prediction and gene fusion detection in non-small cell lung cancer.

Scientific reports
Avec: Anna Karlsson , Helena Cirenajwis , Kajsa Ericson-Lindquist , Hans Brunnström , Christel Reuterswärd , Mats Jönsson , Cristian Ortiz-Villalón , Aziz Hussein , Bengt Bergman , Anders Vikström , Nastaran Monsef , Eva Branden , Hirsh Koyi , Luigi de Petris , Patrick Micke , Annika Patthey , Annelie F Behndig , Mikael Johansson , Maria Planck , Johan Staaf

Trans-omics biomarker model improves prognostic prediction accuracy for early-stage lung adenocarcinoma.

Aging
Avec: Xuesi Dong , Ruyang Zhang , Jieyu He , Linjing Lai , Raphael N Alolga , Sipeng Shen , Ying Zhu , Dongfang You , Lijuan Lin , Chao Chen , Yang Zhao , Weiwei Duan , Li Su , Andrea Shafer , Moran Salama , Thomas Fleischer , Maria Moksnes Bjaanæs , Anna Karlsson , Maria Planck , Rui Wang , Johan Staaf , Åslaug Helland , Manel Esteller , Yongyue Wei , Feng Chen , David C Christiani

Hyperglucagonemia in youth is associated with high plasma free fatty acids, visceral adiposity, and impaired glucose tolerance.

Pediatric diabetes
Avec: Hannes Manell , Hjalti Kristinsson , Joel Kullberg , Sarojini Jayantha Kumari Ubhayasekera , Katharina Mörwald , Johan Staaf , Janne Cadamuro , Fanni Zsoldos , Sven Göpel , Ernest Sargsyan , Håkan Ahlström , Jonas Bergquist , Daniel Weghuber , Anders Forslund , Peter Bergsten

Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series.

Scientific reports
Avec: Johan Vallon-Christersson , Jari Häkkinen , Cecilia Hegardt , Lao H Saal , Christer Larsson , Anna Ehinger , Henrik Lindman , Helena Olofsson , Tobias Sjöblom , Fredrik Wärnberg , Lisa Ryden , Niklas Loman , Martin Malmberg , Åke Borg , Johan Staaf

Epigenetic-smoking interaction reveals histologically heterogeneous effects of TRIM27 DNA methylation on overall survival among early-stage NSCLC patients.

Molecular oncology
Avec: Xinyu Ji , Lijuan Lin , Sipeng Shen , Xuesi Dong , Chao Chen , Yi Li , Ying Zhu , Hui Huang , Jiajin Chen , Xin Chen , Liangmin Wei , Jieyu He , Weiwei Duan , Li Su , Yue Jiang , Juanjuan Fan , Jinxing Guan , Dongfang You , Andrea Shafer , Maria Moksnes Bjaanaes , Anna Karlsson , Maria Planck , Johan Staaf , Åslaug Helland , Manel Esteller , Yongyue Wei , Ruyang Zhang , Feng Chen , David C Christiani

RNA sequencing-based single sample predictors of molecular subtype and risk of recurrence for clinical assessment of early-stage breast cancer.

NPJ breast cancer
Avec: Johan Staaf , Jari Häkkinen , Cecilia Hegardt , Lao H Saal , Siker Kimbung , Ingrid Hedenfalk , Tonje Lien , Therese Sørlie , Bjørn Naume , Hege Russnes , Rachel Marcone , Ayyakkannu Ayyanan , Cathrin Brisken , Rebecka R Malterling , Bengt Asking , Helena Olofsson , Henrik Lindman , Pär-Ola Bendahl , Anna Ehinger , Christer Larsson , Niklas Loman , Lisa Rydén , Martin Malmberg , Åke Borg , Johan Vallon-Christersson

Molecular characteristics of lung adenocarcinoma with respect to patient age at diagnosis.

International journal of cancer
Avec: Johan Staaf , Mattias Aine , Deborah F Nacer , Maria Planck , Elsa Arbajian

Diagnostic gastrointestinal markers in primary lung cancer and pulmonary metastases.

Virchows Archiv : an international journal of pathology
Avec: Karina Malmros , Andreas Lindholm , Halla Vidarsdottir , Karin Jirström , Björn Nodin , Johan Botling , Johanna S M Mattsson , Patrick Micke , Maria Planck , Mats Jönsson , Johan Staaf , Hans Brunnström

Comparison of SP142 and 22C3 PD-L1 assays in a population-based cohort of triple-negative breast cancer patients in the context of their clinically established scoring algorithms.

Breast cancer research : BCR
Avec: Gudbjörg Sigurjonsdottir , Tommaso De Marchi , Anna Ehinger , Johan Hartman , Ana Bosch , Johan Staaf , Fredrika Killander , Emma Niméus

Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.

BMC genomics
Avec: Völundur Hafstað , Jari Häkkinen , Malin Larsson , Johan Staaf , Johan Vallon-Christersson , Helena Persson

Methylation Patterns and Chromatin Accessibility in Neuroendocrine Lung Cancer.

Cancers
Avec: Elsa Arbajian , Mattias Aine , Anna Karlsson , Johan Vallon-Christersson , Hans Brunnström , Josef Davidsson , Sofie Mohlin , Maria Planck , Johan Staaf

EGLN2 DNA methylation and expression interact with HIF1A to affect survival of early-stage NSCLC.

Epigenetics
Avec: Ruyang Zhang , Linjing Lai , Jieyu He , Chao Chen , Dongfang You , Weiwei Duan , Xuesi Dong , Ying Zhu , Lijuan Lin , Sipeng Shen , Yichen Guo , Li Su , Andrea Shafer , Sebastian Moran , Thomas Fleischer , Maria Moksnes Bjaanæs , Anna Karlsson , Maria Planck , Johan Staaf , Åslaug Helland , Manel Esteller , Yongyue Wei , Feng Chen , David C Christiani

The circular RNome of primary breast cancer.

Genome research
Avec: Marcel Smid , Saskia M Wilting , Katharina Uhr , F Germán Rodríguez-González , Vanja de Weerd , Wendy J C Prager-Van der Smissen , Michelle van der Vlugt-Daane , Anne van Galen , Serena Nik-Zainal , Adam Butler , Sancha Martin , Helen R Davies , Johan Staaf , Marc J van de Vijver , Andrea L Richardson , Gaëten MacGrogan , Roberto Salgado , Gert G G M van den Eynden , Colin A Purdie , Alastair M Thompson , Carlos Caldas , Paul N Span , Fred C G J Sweep , Peter T Simpson , Sunil R Lakhani , Steven Van Laere , Christine Desmedt , Angelo Paradiso , Jorunn Eyfjord , Annegien Broeks , Anne Vincent-Salomon , Andrew P Futreal , Stian Knappskog , Tari King , Alain Viari , Anne-Lise Børresen-Dale , Hendrik G Stunnenberg , Mike Stratton , John A Foekens , Anieta M Sieuwerts , John W M Martens

Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation.

Nature communications
Avec: Arie B Brinkman , Serena Nik-Zainal , Femke Simmer , F Germán Rodríguez-González , Marcel Smid , Ludmil B Alexandrov , Adam Butler , Sancha Martin , Helen Davies , Dominik Glodzik , Xueqing Zou , Manasa Ramakrishna , Johan Staaf , Markus Ringnér , Anieta Sieuwerts , Anthony Ferrari , Sandro Morganella , Thomas Fleischer , Vessela Kristensen , Marta Gut , Marc J van de Vijver , Anne-Lise Børresen-Dale , Andrea L Richardson , Gilles Thomas , Ivo G Gut , John W M Martens , John A Foekens , Michael R Stratton , Hendrik G Stunnenberg

Proteogenomics of non-small cell lung cancer reveals molecular subtypes associated with specific therapeutic targets and immune evasion mechanisms.

Nature cancer
Avec: Janne Lehtiö , Taner Arslan , Ioannis Siavelis , Yanbo Pan , Fabio Socciarelli , Olena Berkovska , Husen M Umer , Georgios Mermelekas , Mohammad Pirmoradian , Mats Jönsson , Hans Brunnström , Odd Terje Brustugun , Krishna Pinganksha Purohit , Richard Cunningham , Hassan Foroughi Asl , Sofi Isaksson , Elsa Arbajian , Mattias Aine , Anna Karlsson , Marija Kotevska , Carsten Gram Hansen , Vilde Drageset Haakensen , Åslaug Helland , David Tamborero , Henrik J Johansson , Rui M Branca , Maria Planck , Johan Staaf , Lukas M Orre

Clinical Utility of Targeted Sequencing in Lung Cancer: Experience From an Autonomous Swedish Health Care Center.

JTO clinical and research reports
Avec: Sofi Isaksson , Bassam Hazem , Mats Jönsson , Christel Reuterswärd , Anna Karlsson , Håkan Griph , Jens Engleson , Gudrun Oskarsdottir , Ronny Öhman , Karolina Holm , Frida Rosengren , Karin Annersten , Göran Jönsson , Åke Borg , Anders Edsjö , Per Levéen , Hans Brunnström , Kajsa Ericson Lindquist , Johan Staaf , Maria Planck

Detection of Non-Small Lung Cell Carcinoma-Associated Genetic Alterations Using a NanoString Gene Expression Platform Approach.

Methods in molecular biology (Clifton, N.J.)
Avec: Johan Staaf , Mats Jönsson , Anna F Karlsson

Pan-cancer application of a lung-adenocarcinoma-derived gene-expression-based prognostic predictor.

Briefings in bioinformatics
Avec: Deborah F Nacer , Helena Liljedahl , Anna Karlsson , David Lindgren , Johan Staaf

A trans-omics assessment of gene-gene interaction in early-stage NSCLC.

Molecular oncology
Avec: Jiajin Chen , Yunjie Song , Yi Li , Yongyue Wei , Sipeng Shen , Yang Zhao , Dongfang You , Li Su , Maria Moksnes Bjaanaes , Anna Karlsson , Maria Planck , Johan Staaf , Åslaug Helland , Manel Esteller , Hongbing Shen , David C Christiani , Ruyang Zhang , Feng Chen

Current and emerging sequencing-based tools for precision cancer medicine.

Molecular aspects of medicine
Avec: Anders Edsjö , David Gisselsson , Johan Staaf , Louise Holmquist , Thoas Fioretos , Lucia Cavelier , Richard Rosenquist

Tumour immune characterisation of primary triple-negative breast cancer using automated image quantification of immunohistochemistry-stained immune cells.

Scientific reports
Avec: Suze Roostee , Daniel Ehinger , Mats Jönsson , Bengt Phung , Göran Jönsson , Gottfrid Sjödahl , Johan Staaf , Mattias Aine

FHL2 expression by cancer-associated fibroblasts promotes metastasis and angiogenesis in lung adenocarcinoma.

International journal of cancer
Avec: Ryu Kanzaki , Steven Reid , Paulina Bolivar , Jonas Sjölund , Johan Staaf , Sara Larsson , Yasushi Shintani , Kristian Pietras

Oncogenic translation directs spliceosome dynamics revealing an integral role for SF3A3 in breast cancer.

Molecular cell
Avec: Maciej Cieśla , Phuong Cao Thi Ngoc , Eugenia Cordero , Álvaro Sejas Martinez , Mikkel Morsing , Sowndarya Muthukumar , Giulia Beneventi , Magdalena Madej , Roberto Munita , Terese Jönsson , Kristina Lövgren , Anna Ebbesson , Björn Nodin , Ingrid Hedenfalk , Karin Jirström , Johan Vallon-Christersson , Gabriella Honeth , Johan Staaf , Danny Incarnato , Kristian Pietras , Ana Bosch , Cristian Bellodi

Getting the conclusive lead with investigative genetic genealogy - A successful case study of a 16 year old double murder in Sweden.

Forensic science international. Genetics
Avec: Andreas Tillmar , Siri Aili Fagerholm , Jan Staaf , Peter Sjölund , Ricky Ansell

Distinct mechanisms of resistance to fulvestrant treatment dictate level of ER independence and selective response to CDK inhibitors in metastatic breast cancer.

Breast cancer research : BCR
Avec: Kamila Kaminska , Nina Akrap , Johan Staaf , Carla L Alves , Anna Ehinger , Anna Ebbesson , Ingrid Hedenfalk , Lukas Beumers , Srinivas Veerla , Katja Harbst , Sidse Ehmsen , Signe Borgquist , Åke Borg , Alejandro Pérez-Fidalgo , Henrik J Ditzel , Ana Bosch , Gabriella Honeth

Mutational Landscape in Resected Periampullary Adenocarcinoma: Relationship With Morphology and Clinical Outcome.

JCO precision oncology
Avec: Sebastian Lundgren , Sofie Olsson Hau , Jacob Elebro , Margareta Heby , Emelie Karnevi , Björn Nodin , Jakob Eberhard , Karolina Holm , Johan Staaf , Göran B Jönsson , Karin Jirström

SIPA1L3 methylation modifies the benefit of smoking cessation on lung adenocarcinoma survival: an epigenomic-smoking interaction analysis.

Molecular oncology
Avec: Ruyang Zhang , Linjing Lai , Xuesi Dong , Jieyu He , Dongfang You , Chao Chen , Lijuan Lin , Ying Zhu , Hui Huang , Sipeng Shen , Liangmin Wei , Xin Chen , Yichen Guo , Liya Liu , Li Su , Andrea Shafer , Sebastian Moran , Thomas Fleischer , Maria Moksnes Bjaanaes , Anna Karlsson , Maria Planck , Johan Staaf , Åslaug Helland , Manel Esteller , Yongyue Wei , Feng Chen , David C Christiani

Prediction of Lymph Node Metastasis in Breast Cancer by Gene Expression and Clinicopathological Models: Development and Validation within a Population-Based Cohort.

Clinical cancer research : an official journal of the American Association for Cancer Research
Avec: Looket Dihge , Johan Vallon-Christersson , Cecilia Hegardt , Lao H Saal , Jari Häkkinen , Christer Larsson , Anna Ehinger , Niklas Loman , Martin Malmberg , Pär-Ola Bendahl , Åke Borg , Johan Staaf , Lisa Rydén

Analysis of DNA methylation patterns in the tumor immune microenvironment of metastatic melanoma.

Molecular oncology
Avec: Shamik Mitra , Martin Lauss , Rita Cabrita , Jiyeon Choi , Tongwu Zhang , Karolin Isaksson , Håkan Olsson , Christian Ingvar , Ana Carneiro , Johan Staaf , Markus Ringnér , Kari Nielsen , Kevin M Brown , Göran Jönsson

Comprehensive analysis of RNA binding motif protein 3 (RBM3) in non-small cell lung cancer.

Cancer medicine
Avec: Annette Salomonsson , Patrick Micke , Johanna S M Mattsson , Linnea La Fleur , Johan Isaksson , Mats Jönsson , Björn Nodin , Johan Botling , Mathias Uhlén , Karin Jirström , Johan Staaf , Maria Planck , Hans Brunnström

Diagnostic Value of Insulinoma-Associated Protein 1 (INSM1) and Comparison With Established Neuroendocrine Markers in Pulmonary Cancers.

Archives of pathology & laboratory medicine
Avec: Johan Staaf , Lena Tran , Linnea Söderlund , Björn Nodin , Karin Jirström , Halla Vidarsdottir , Maria Planck , Johanna S M Mattsson , Johan Botling , Patrick Micke , Hans Brunnström

Feasibility of EBUS-TBNA for histopathological and molecular diagnostics of NSCLC-A retrospective single-center experience.

PloS one
Avec: Marija Karadzovska-Kotevska , Hans Brunnström , Jaroslaw Kosieradzki , Lars Ek , Christel Estberg , Johan Staaf , Stefan Barath , Maria Planck

Molecular characteristics of breast tumors in patients screened for germline predisposition from a population-based observational study.

Genome medicine
Avec: Deborah F Nacer , Johan Vallon-Christersson , Nicklas Nordborg , Hans Ehrencrona , Anders Kvist , Åke Borg , Johan Staaf

Perturbation and stability of PAM50 subtyping in population-based primary invasive breast cancer.

NPJ breast cancer
Avec: Srinivas Veerla , Lennart Hohmann , Deborah F Nacer , Johan Vallon-Christersson , Johan Staaf

Réseau de co-auteurs

Maria Planck 19 collaborations
Anna Karlsson 16 collaborations
Johan Vallon-Christersson 12 collaborations
Åke Borg 10 collaborations
Åslaug Helland 9 collaborations
Anna Ehinger 9 collaborations
Hans Brunnström 9 collaborations
Yongyue Wei 8 collaborations
Sipeng Shen 8 collaborations
Li Su 8 collaborations
Manel Esteller 8 collaborations
Ruyang Zhang 8 collaborations
Feng Chen 8 collaborations
David C Christiani 8 collaborations
Mattias Aine 8 collaborations
Mats Jönsson 8 collaborations
Lijuan Lin 7 collaborations
Dongfang You 7 collaborations
Andrea Shafer 7 collaborations
Jari Häkkinen 7 collaborations
Chao Chen 6 collaborations
Xuesi Dong 6 collaborations
Jieyu He 6 collaborations
Ying Zhu 6 collaborations
Thomas Fleischer 6 collaborations
Ana Bosch 6 collaborations
Linjing Lai 5 collaborations
Weiwei Duan 5 collaborations
Lao H Saal 5 collaborations
Cecilia Hegardt 5 collaborations
Christer Larsson 5 collaborations
Niklas Loman 5 collaborations
Martin Malmberg 5 collaborations
Serena Nik-Zainal 5 collaborations
Karin Jirström 5 collaborations
Björn Nodin 5 collaborations
Liangmin Wei 4 collaborations
Jiajin Chen 4 collaborations
Xin Chen 4 collaborations
Hui Huang 4 collaborations
Maria Moksnes Bjaanæs 4 collaborations
Dominik Glodzik 4 collaborations
Christel Reuterswärd 4 collaborations
Lisa Rydén 4 collaborations
Johan Hartman 4 collaborations
Srinivas Veerla 4 collaborations
Elsa Arbajian 4 collaborations
Yi Li 4 collaborations
Maria Moksnes Bjaanaes 4 collaborations
Patrick Micke 4 collaborations
Deborah F Nacer 4 collaborations
Rui Wang 3 collaborations
Anders Kvist 3 collaborations
Hans Ehrencrona 3 collaborations
Sancha Martin 3 collaborations
Marcel Smid 3 collaborations
Markus Ringnér 3 collaborations
Adam Butler 3 collaborations
John A Foekens 3 collaborations
F Germán Rodríguez-González 3 collaborations
Hendrik G Stunnenberg 3 collaborations
Marc J van de Vijver 3 collaborations
John W M Martens 3 collaborations
Anne-Lise Børresen-Dale 3 collaborations
Andrea L Richardson 3 collaborations
Sofi Isaksson 3 collaborations
Shamik Mitra 3 collaborations
Karolina Holm 3 collaborations
Yichen Guo 3 collaborations
Ingrid Hedenfalk 3 collaborations
Johan Botling 3 collaborations
Johanna S M Mattsson 3 collaborations
Göran Jönsson 3 collaborations
Helen R Davies 2 collaborations
Emma Nimeus 2 collaborations
Karim H Saba 2 collaborations
Michal Kovac 2 collaborations
Louise Cornmark 2 collaborations
Linda Magnusson 2 collaborations
Jenny Nilsson 2 collaborations
Hilda van den Bos 2 collaborations
Diana Cj Spierings 2 collaborations
Vaiyapuri P Sumathi 2 collaborations
Otte Brosjö 2 collaborations
Floris Foijer 2 collaborations
Emelie Styring 2 collaborations
Daniel Baumhoer 2 collaborations
Karolin H Nord 2 collaborations
Helena Cirenajwis 2 collaborations
Martin Lauss 2 collaborations
Helen Davies 2 collaborations
Manasa Ramakrishna 2 collaborations
Xueqing Zou 2 collaborations
Ludmil B Alexandrov 2 collaborations
Arie B Brinkman 2 collaborations
Sandro Morganella 2 collaborations
Annegien Broeks 2 collaborations
Christine Desmedt 2 collaborations
Colin A Purdie 2 collaborations
Anieta M Sieuwerts 2 collaborations
Peter T Simpson 2 collaborations
Anne Vincent-Salomon 2 collaborations
Carlos Caldas 2 collaborations
Stian Knappskog 2 collaborations
Alain Viari 2 collaborations
Paul N Span 2 collaborations
Steven Van Laere 2 collaborations
Sunil R Lakhani 2 collaborations
Alastair M Thompson 2 collaborations
Gilles Thomas 2 collaborations
Michael R Stratton 2 collaborations
Helena Liljedahl 2 collaborations
Annette Salomonsson 2 collaborations
Cristian Ortiz-Villalón 2 collaborations
Aziz Hussein 2 collaborations
Bengt Bergman 2 collaborations
Anders Vikström 2 collaborations
Nastaran Monsef 2 collaborations
Eva Branden 2 collaborations
Hirsh Koyi 2 collaborations
Luigi de Petris 2 collaborations
Annika Patthey 2 collaborations
Annelie F Behndig 2 collaborations
Mikael Johansson 2 collaborations
Emma Niméus 2 collaborations
Xinyu Ji 2 collaborations
Juanjuan Fan 2 collaborations
Carla L Alves 2 collaborations
Sidse Ehmsen 2 collaborations
Henrik J Ditzel 2 collaborations
Liya Liu 2 collaborations
Yang Zhao 2 collaborations
Henrik Lindman 2 collaborations
Helena Olofsson 2 collaborations
Pär-Ola Bendahl 2 collaborations
Halla Vidarsdottir 2 collaborations
Sebastian Moran 2 collaborations
Anders Edsjö 2 collaborations
Kristian Pietras 2 collaborations
Anna Ebbesson 2 collaborations
Gabriella Honeth 2 collaborations
Andrea Degasperi 1 collaboration
Tauanne Dias Amarante 1 collaboration
Hilary Stobart 1 collaboration
Chrysostomi Gialeli 1 collaboration
Emre Can Tuysuz 1 collaboration
Safia Guleed 1 collaboration
Veronika Paciorek 1 collaboration
Matthias Mörgelin 1 collaboration
Konstantinos S Papadakos 1 collaboration
Anna M Blom 1 collaboration
Yalai Bai 1 collaboration
Kimberly Cole 1 collaboration
Sandra Martinez-Morilla 1 collaboration
Fahad Shabbir Ahmed 1 collaboration
Jon Zugazagoitia 1 collaboration
Balazs Acs 1 collaboration
David L Rimm 1 collaboration
Jacob Karlström 1 collaboration
Valeria Difilippo 1 collaboration
Mahtab Bidgoli 1 collaboration
Tord Jonson 1 collaboration
Michaela Nathrath 1 collaboration
Inigo Martincorena 1 collaboration
David C Wedge 1 collaboration
Peter Van Loo 1 collaboration
Young Seok Ju 1 collaboration
Miriam R Aure 1 collaboration
Ole Christian Lingjærde 1 collaboration
Anita Langerød 1 collaboration
Sung-Min Ahn 1 collaboration
Sandrine Boyault 1 collaboration
Jane E Brock 1 collaboration
Luc Dirix 1 collaboration
Serge Dronov 1 collaboration
Aquila Fatima 1 collaboration
Moritz Gerstung 1 collaboration
Gerrit K J Hooijer 1 collaboration
Se Jin Jang 1 collaboration
David R Jones 1 collaboration
Hyung-Yong Kim 1 collaboration
Tari A King 1 collaboration
Savitri Krishnamurthy 1 collaboration
Hee Jin Lee 1 collaboration
Jeong-Yeon Lee 1 collaboration
Yilong Li 1 collaboration
Stuart McLaren 1 collaboration
Andrew Menzies 1 collaboration
Ville Mustonen 1 collaboration
Sarah O'Meara 1 collaboration
Iris Pauporté 1 collaboration
Xavier Pivot 1 collaboration
Keiran Raine 1 collaboration
Kamna Ramakrishnan 1 collaboration
Gilles Romieu 1 collaboration
Rebecca Shepherd 1 collaboration
Lucy Stebbings 1 collaboration
Olafur A Stefansson 1 collaboration
Jon Teague 1 collaboration
Stefania Tommasi 1 collaboration
Isabelle Treilleux 1 collaboration
Gert G Van den Eynden 1 collaboration
Peter Vermeulen 1 collaboration
Lucy Yates 1 collaboration
Laura Van't Veer 1 collaboration
Andrew Tutt 1 collaboration
Benita Kiat Tee Tan 1 collaboration
Jos Jonkers 1 collaboration
Naoto T Ueno 1 collaboration
Christos Sotiriou 1 collaboration
P Andrew Futreal 1 collaboration
Peter J Campbell 1 collaboration
Jorunn E Eyfjord 1 collaboration
Ewan Birney 1 collaboration
Gu Kong 1 collaboration
Gudrun N Oskarsdottir 1 collaboration
Gigja Erlingsdottir 1 collaboration
Jelmar Quist 1 collaboration
Lawson Taylor 1 collaboration
Anita Grigoriadis 1 collaboration
Ceren Boyaci 1 collaboration
Ana Bosch Campos 1 collaboration
Benedetta Conte 1 collaboration
Fara Brasó-Maristany 1 collaboration
Adela Rodríguez Hernández 1 collaboration
Tomás Pascual 1 collaboration
Guillermo Villacampa 1 collaboration
Francesco Schettini 1 collaboration
Maria J Vidal Losada 1 collaboration
Elia Seguí 1 collaboration
Laura Angelats 1 collaboration
Isabel Garcia-Fructuoso 1 collaboration
Raquel Gómez-Bravo 1 collaboration
Natàlia Lorman-Carbó 1 collaboration
Laia Paré 1 collaboration
Mercedes Marín-Aguilera 1 collaboration
Olga Martínez-Sáez 1 collaboration
Barbara Adamo 1 collaboration
Esther Sanfeliu 1 collaboration
Beatrice Fratini 1 collaboration
Claudette Falato 1 collaboration
Núria Chic 1 collaboration
Ana Vivancos 1 collaboration
Patricia Villagrasa 1 collaboration
Joel S Parker 1 collaboration
Charles M Perou 1 collaboration
Aleix Prat 1 collaboration
Charlotte K Kindt 1 collaboration
Amalie Kragh 1 collaboration
Thomas Reinert 1 collaboration
Marianne Vogsen 1 collaboration
Annette R Kodahl 1 collaboration
Jeanette D Rønlev 1 collaboration
Dilan Ardik 1 collaboration
Anna L Sørensen 1 collaboration
Kirstine Evald 1 collaboration
Mia L Clemmensen 1 collaboration
Jakob Hofvander 1 collaboration
Suk Wai Lam 1 collaboration
Karoly Szuhai 1 collaboration
Judith Vmg Bovée 1 collaboration
Kajsa Ericson-Lindquist 1 collaboration
Raphael N Alolga 1 collaboration
Moran Salama 1 collaboration
Hannes Manell 1 collaboration
Hjalti Kristinsson 1 collaboration
Joel Kullberg 1 collaboration
Sarojini Jayantha Kumari Ubhayasekera 1 collaboration
Katharina Mörwald 1 collaboration
Janne Cadamuro 1 collaboration
Fanni Zsoldos 1 collaboration
Sven Göpel 1 collaboration
Ernest Sargsyan 1 collaboration
Håkan Ahlström 1 collaboration
Jonas Bergquist 1 collaboration
Daniel Weghuber 1 collaboration
Anders Forslund 1 collaboration
Peter Bergsten 1 collaboration
Tobias Sjöblom 1 collaboration
Fredrik Wärnberg 1 collaboration
Lisa Ryden 1 collaboration
Yue Jiang 1 collaboration
Jinxing Guan 1 collaboration
Siker Kimbung 1 collaboration
Tonje Lien 1 collaboration
Therese Sørlie 1 collaboration
Bjørn Naume 1 collaboration
Hege Russnes 1 collaboration
Rachel Marcone 1 collaboration
Ayyakkannu Ayyanan 1 collaboration
Cathrin Brisken 1 collaboration
Rebecka R Malterling 1 collaboration
Bengt Asking 1 collaboration
Karina Malmros 1 collaboration
Andreas Lindholm 1 collaboration
Gudbjörg Sigurjonsdottir 1 collaboration
Tommaso De Marchi 1 collaboration
Fredrika Killander 1 collaboration
Völundur Hafstað 1 collaboration
Malin Larsson 1 collaboration
Helena Persson 1 collaboration
Josef Davidsson 1 collaboration
Sofie Mohlin 1 collaboration
Saskia M Wilting 1 collaboration
Katharina Uhr 1 collaboration
Vanja de Weerd 1 collaboration
Wendy J C Prager-Van der Smissen 1 collaboration
Michelle van der Vlugt-Daane 1 collaboration
Anne van Galen 1 collaboration
Gaëten MacGrogan 1 collaboration
Roberto Salgado 1 collaboration
Gert G G M van den Eynden 1 collaboration
Fred C G J Sweep 1 collaboration
Angelo Paradiso 1 collaboration
Jorunn Eyfjord 1 collaboration
Andrew P Futreal 1 collaboration
Tari King 1 collaboration
Mike Stratton 1 collaboration
Femke Simmer 1 collaboration
Anieta Sieuwerts 1 collaboration
Anthony Ferrari 1 collaboration
Vessela Kristensen 1 collaboration
Marta Gut 1 collaboration
Ivo G Gut 1 collaboration
Janne Lehtiö 1 collaboration
Taner Arslan 1 collaboration
Ioannis Siavelis 1 collaboration
Yanbo Pan 1 collaboration
Fabio Socciarelli 1 collaboration
Olena Berkovska 1 collaboration
Husen M Umer 1 collaboration
Georgios Mermelekas 1 collaboration
Mohammad Pirmoradian 1 collaboration
Odd Terje Brustugun 1 collaboration
Krishna Pinganksha Purohit 1 collaboration
Richard Cunningham 1 collaboration
Hassan Foroughi Asl 1 collaboration
Marija Kotevska 1 collaboration
Carsten Gram Hansen 1 collaboration
Vilde Drageset Haakensen 1 collaboration
David Tamborero 1 collaboration
Henrik J Johansson 1 collaboration
Rui M Branca 1 collaboration
Lukas M Orre 1 collaboration
Bassam Hazem 1 collaboration
Håkan Griph 1 collaboration
Jens Engleson 1 collaboration
Gudrun Oskarsdottir 1 collaboration
Ronny Öhman 1 collaboration
Frida Rosengren 1 collaboration
Karin Annersten 1 collaboration
Per Levéen 1 collaboration
Kajsa Ericson Lindquist 1 collaboration
Anna F Karlsson 1 collaboration
David Lindgren 1 collaboration
Yunjie Song 1 collaboration
Hongbing Shen 1 collaboration
David Gisselsson 1 collaboration
Louise Holmquist 1 collaboration
Thoas Fioretos 1 collaboration
Lucia Cavelier 1 collaboration
Richard Rosenquist 1 collaboration
Suze Roostee 1 collaboration
Daniel Ehinger 1 collaboration
Bengt Phung 1 collaboration
Gottfrid Sjödahl 1 collaboration
Ryu Kanzaki 1 collaboration
Steven Reid 1 collaboration
Paulina Bolivar 1 collaboration
Jonas Sjölund 1 collaboration
Sara Larsson 1 collaboration
Yasushi Shintani 1 collaboration
Maciej Cieśla 1 collaboration
Phuong Cao Thi Ngoc 1 collaboration
Eugenia Cordero 1 collaboration
Álvaro Sejas Martinez 1 collaboration
Mikkel Morsing 1 collaboration
Sowndarya Muthukumar 1 collaboration
Giulia Beneventi 1 collaboration
Magdalena Madej 1 collaboration
Roberto Munita 1 collaboration
Terese Jönsson 1 collaboration
Kristina Lövgren 1 collaboration
Danny Incarnato 1 collaboration
Cristian Bellodi 1 collaboration
Andreas Tillmar 1 collaboration
Siri Aili Fagerholm 1 collaboration
Jan Staaf 1 collaboration
Peter Sjölund 1 collaboration
Ricky Ansell 1 collaboration
Kamila Kaminska 1 collaboration
Nina Akrap 1 collaboration
Lukas Beumers 1 collaboration
Katja Harbst 1 collaboration
Signe Borgquist 1 collaboration
Alejandro Pérez-Fidalgo 1 collaboration
Sebastian Lundgren 1 collaboration
Sofie Olsson Hau 1 collaboration
Jacob Elebro 1 collaboration
Margareta Heby 1 collaboration
Emelie Karnevi 1 collaboration
Jakob Eberhard 1 collaboration
Göran B Jönsson 1 collaboration
Looket Dihge 1 collaboration
Rita Cabrita 1 collaboration
Jiyeon Choi 1 collaboration
Tongwu Zhang 1 collaboration
Karolin Isaksson 1 collaboration
Håkan Olsson 1 collaboration
Christian Ingvar 1 collaboration
Ana Carneiro 1 collaboration
Kari Nielsen 1 collaboration
Kevin M Brown 1 collaboration
Linnea La Fleur 1 collaboration
Johan Isaksson 1 collaboration
Mathias Uhlén 1 collaboration
Lena Tran 1 collaboration
Linnea Söderlund 1 collaboration
Marija Karadzovska-Kotevska 1 collaboration
Jaroslaw Kosieradzki 1 collaboration
Lars Ek 1 collaboration
Christel Estberg 1 collaboration
Stefan Barath 1 collaboration
Nicklas Nordborg 1 collaboration
Lennart Hohmann 1 collaboration