Multi-genome comparisons reveal gain-and-loss evolution of the

genome perches pikeperches sex-chromosomes sex-determination

Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
16 Nov 2023
Historique:
pubmed: 28 11 2023
medline: 28 11 2023
entrez: 28 11 2023
Statut: epublish

Résumé

The Percidae family comprises many fish species of major importance for aquaculture and fisheries. Based on three new chromosome-scale assemblies in

Identifiants

DOI: 10.1101/2023.11.13.566804 PMID: 38014084 PMC: PMC10680665
pubmed: 38014084
doi: 10.1101/2023.11.13.566804
pmc: PMC10680665
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIGMS NIH HHS
ID : R35 GM139635
Pays : United States

Déclaration de conflit d'intérêts

COMPETING INTERESTS All authors declare no competing interests.

Auteurs

Heiner Kuhl (H)

Leibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587 Berlin, Germany.
ORCID: 0000-0001-7623-9227

Peter T Euclide (PT)

Department of Forestry and Natural Resources | Illinois-Indiana Sea Grant, Purdue University, West Lafayette, Indiana, USA.
ORCID: 0000-0002-1212-0435

Christophe Klopp (C)

Sigenae, Plateforme Bioinformatique, Genotoul, BioinfoMics, UR875 Biométrie et Intelligence Artificielle, INRAE, Castanet-Tolosan, France.
ORCID: 0000-0001-7126-5477

Cedric Cabau (C)

Sigenae, GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.
ORCID: 0000-0001-8560-4003

Margot Zahm (M)

Sigenae, Plateforme Bioinformatique, Genotoul, BioinfoMics, UR875 Biométrie et Intelligence Artificielle, INRAE, Castanet-Tolosan, France.
ORCID: 0000-0001-8632-0109

Céline Roques (C)

INRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
ORCID: 0000-0003-2529-7958

Carole Iampietro (C)

INRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.

Claire Kuchly (C)

INRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
ORCID: 0000-0001-8994-550X

Cécile Donnadieu (C)

INRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
ORCID: 0000-0002-5041-6843

Romain Feron (R)

Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Swiss Institute of Bioinformatics, Lausanne, Switzerland.
ORCID: 0000-0001-5893-6184

Hugues Parrinello (H)

Montpellier GenomiX (MGX), c/o Institut de Génomique Fonctionnelle, 141 rue de la Cardonille, 34094, Montpellier Cedex 05, France.
ORCID: 0000-0002-1151-001X

Charles Poncet (C)

GDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
ORCID: 0000-0003-3376-347X

Lydia Jaffrelo (L)

GDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.

Carole Confolent (C)

GDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.

Ming Wen (M)

INRAE, LPGP, 35000, Rennes, France.
State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Changsha, China.

Amaury Herpin (A)

INRAE, LPGP, 35000, Rennes, France.
ORCID: 0000-0002-0630-4027

Elodie Jouanno (E)

INRAE, LPGP, 35000, Rennes, France.

Anastasia Bestin (A)

SYSAAF, Station INRAE-LPGP, Campus de Beaulieu, 35042, Rennes cedex, France.
ORCID: 0000-0002-1777-338X

Pierrick Haffray (P)

SYSAAF, Station INRAE-LPGP, Campus de Beaulieu, 35042, Rennes cedex, France.
ORCID: 0000-0001-8604-4562

Romain Morvezen (R)

SYSAAF, Station INRAE-LPGP, Campus de Beaulieu, 35042, Rennes cedex, France.
ORCID: 0000-0002-9773-9359

Taina Rocha de Almeida (TR)

University of Lorraine, INRAE, UR AFPA, Nancy, France.

Thomas Lecocq (T)

University of Lorraine, INRAE, UR AFPA, Nancy, France.
ORCID: 0000-0002-4947-0332

Bérénice Schaerlinger (B)

University of Lorraine, INRAE, UR AFPA, Nancy, France.
ORCID: 0000-0002-7449-2752

Dominique Chardard (D)

University of Lorraine, INRAE, UR AFPA, Nancy, France.
ORCID: 0000-0002-1782-575X

Daniel Żarski (D)

Department of Gamete and Embryo Biology, Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, ul. Tuwima 10, 10-748, Olsztyn, Poland.

Wes Larson (W)

National Oceanographic and Atmospheric Administration, National Marine Fisheries Service, Alaska Fisheries Science Center, Auke Bay Laboratories, 17109 Point Lena Loop Road, Juneau, AK, 99801, USA.

John H Postlethwait (JH)

Institute of Neuroscience, University of Oregon, Eugene, OR, 97403, USA.

Serik Timirkhanov (S)

Sea Biology LLP, Almaty, Kazakhstan.
ORCID: 0000-0001-6933-7515

Werner Kloas (W)

Leibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587 Berlin, Germany.
ORCID: 0000-0001-8905-183X

Sven Wuertz (S)

Leibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587 Berlin, Germany.

Matthias Stöck (M)

Leibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587 Berlin, Germany.
ORCID: 0000-0003-4888-8371

Yann Guiguen (Y)

INRAE, LPGP, 35000, Rennes, France.
ORCID: 0000-0001-5464-6219

Classifications MeSH