Pierrick Haffray

Affiliations

SYSAAF, Station LPGP/INRAE, Campus de Beaulieu, 35042, Rennes, France.

Publications (23)

Estimates of recent and historical effective population size in turbot, seabream, seabass and carp selective breeding programmes.

Genetics, selection, evolution : GSE

Avec: María Saura , Armando Caballero , Enrique Santiago , Almudena Fernández , Elisabeth Morales-González , Jesús Fernández , Santiago Cabaleiro , Adrián Millán , Paulino Martínez , Christos Palaiokostas , Martin Kocour , Muhammad L Aslam , Ross D Houston , Martin Prchal , Luca Bargelloni , Kostas Tzokas , Pierrick Haffray , Jean-Sebastien Bruant , Beatriz Villanueva

APIS: An auto-adaptive parentage inference software that tolerates missing parents.

Molecular ecology resources

Avec: Ronan Griot , François Allal , Sophie Brard-Fudulea , Romain Morvezen , Pierrick Haffray , Florence Phocas , Marc Vandeputte

Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing.

Scientific reports

Avec: Clémence Fraslin , Florence Phocas , Anastasia Bestin , Mathieu Charles , Maria Bernard , Francine Krieg , Nicolas Dechamp , Céline Ciobotaru , Chris Hozé , Florent Petitprez , Marine Milhes , Jérôme Lluch , Olivier Bouchez , Charles Poncet , Philippe Hocdé , Pierrick Haffray , Yann Guiguen , Edwige Quillet

Functional Additives in a Selected European Sea Bass (

Animals : an open access journal from MDPI

Avec: Antonio Serradell , Daniel Montero , Genciana Terova , Simona Rimoldi , Alex Makol , Félix Acosta , Aline Bajek , Pierrick Haffray , François Allal , Silvia Torrecillas

Genetic Parameters and Genome-Wide Association Studies of Quality Traits Characterised Using Imaging Technologies in Rainbow Trout,

Frontiers in genetics

Avec: Carole Blay , Pierrick Haffray , Jérôme Bugeon , Jonathan D'Ambrosio , Nicolas Dechamp , Guylaine Collewet , Florian Enez , Vincent Petit , Xavier Cousin , Geneviève Corraze , Florence Phocas , Mathilde Dupont-Nivet

Genetic architecture of acute hyperthermia resistance in juvenile rainbow trout (Oncorhynchus mykiss) and genetic correlations with production traits.

Genetics, selection, evolution : GSE

Avec: Henri Lagarde , Delphine Lallias , Pierre Patrice , Audrey Dehaullon , Martin Prchal , Yoannah François , Jonathan D'Ambrosio , Emilien Segret , Ana Acin-Perez , Frederic Cachelou , Pierrick Haffray , Mathilde Dupont-Nivet , Florence Phocas

Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae.

BMC biology

Avec: Heiner Kuhl , Peter T Euclide , Christophe Klopp , Cédric Cabau , Margot Zahm , Céline Lopez-Roques , Carole Iampietro , Claire Kuchly , Cécile Donnadieu , Romain Feron , Hugues Parrinello , Charles Poncet , Lydia Jaffrelo , Carole Confolent , Ming Wen , Amaury Herpin , Elodie Jouanno , Anastasia Bestin , Pierrick Haffray , Romain Morvezen , Taina Rocha de Almeida , Thomas Lecocq , Bérénice Schaerlinger , Dominique Chardard , Daniel Żarski , Wesley A Larson , John H Postlethwait , Serik Timirkhanov , Werner Kloas , Sven Wuertz , Matthias Stöck , Yann Guiguen

Potential for Genetic Improvement of Resistance to

Frontiers in veterinary science

Avec: Morgan Smits , Florian Enez , Serena Ferraresso , Giulia Dalla Rovere , Emilie Vetois , Jean-François Auvray , Lucie Genestout , Rachid Mahla , Giuseppe Arcangeli , Christine Paillard , Pierrick Haffray , Luca Bargelloni

First Evidence of Realized Selection Response on Fillet Yield in Rainbow Trout

Frontiers in genetics

Avec: Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamellou , Anne-Sophie Tyran , François Allal , Mathilde Dupont-Nivet , Pierrick Haffray

Genetic architecture and genomic selection of female reproduction traits in rainbow trout.

BMC genomics

Avec: J D'Ambrosio , R Morvezen , S Brard-Fudulea , A Bestin , A Acin Perez , D Guéméné , C Poncet , P Haffray , M Dupont-Nivet , F Phocas

Genetic architecture and genomic selection of fatty acid composition predicted by Raman spectroscopy in rainbow trout.

BMC genomics

Avec: Carole Blay , Pierrick Haffray , Jonathan D'Ambrosio , Enora Prado , Nicolas Dechamp , Virginie Nazabal , Jérôme Bugeon , Florian Enez , David Causeur , Christophe Eklouh-Molinier , Vincent Petit , Florence Phocas , Geneviève Corraze , Mathilde Dupont-Nivet

Corrigendum: Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, The European Sea Bass (

Frontiers in genetics

Avec: Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen , Pierrick Haffray , Yoannah François , Thierry Morin , Anastasia Bestin , Jean-Sébastien Bruant , Sophie Cariou , Bruno Peyrou , Joseph Brunier , Marc Vandeputte

Prediction of fatty acids composition in the rainbow trout Oncorhynchus mykiss by using Raman micro-spectroscopy.

Analytica chimica acta

Avec: E Prado , C Eklouh-Molinier , F Enez , D Causeur , C Blay , M Dupont-Nivet , L Labbé , V Petit , A Moreac , G Taupier , P Haffray , J Bugeon , G Corraze , V Nazabal

Multi-genome comparisons reveal gain-and-loss evolution of the

bioRxiv : the preprint server for biology

Avec: Heiner Kuhl , Peter T Euclide , Christophe Klopp , Cedric Cabau , Margot Zahm , Céline Roques , Carole Iampietro , Claire Kuchly , Cécile Donnadieu , Romain Feron , Hugues Parrinello , Charles Poncet , Lydia Jaffrelo , Carole Confolent , Ming Wen , Amaury Herpin , Elodie Jouanno , Anastasia Bestin , Pierrick Haffray , Romain Morvezen , Taina Rocha de Almeida , Thomas Lecocq , Bérénice Schaerlinger , Dominique Chardard , Daniel Żarski , Wes Larson , John H Postlethwait , Serik Timirkhanov , Werner Kloas , Sven Wuertz , Matthias Stöck , Yann Guiguen

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens.

Molecular ecology resources

Avec: Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques , Olivier Bouchez , Camille Eché , Sophie Valière , Cécile Donnadieu , Pierrick Haffray , Anastasia Bestin , Romain Morvezen , Hervé Acloque , Peter T Euclide , Ming Wen , Elodie Jouano , Manfred Schartl , John H Postlethwait , Claire Schraidt , Mark R Christie , Wesley A Larson , Amaury Herpin , Yann Guiguen

Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding.

Genetics, selection, evolution : GSE

Avec: Jonathan D'Ambrosio , Florence Phocas , Pierrick Haffray , Anastasia Bestin , Sophie Brard-Fudulea , Charles Poncet , Edwige Quillet , Nicolas Dechamp , Clémence Fraslin , Mathieu Charles , Mathilde Dupont-Nivet

Rainbow trout resistance to bacterial cold water disease: two new quantitative trait loci identified after a natural disease outbreak on a French farm.

Animal genetics

Avec: C Fraslin , S Brard-Fudulea , J D'Ambrosio , A Bestin , M Charles , P Haffray , E Quillet , F Phocas

Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (

Frontiers in genetics

A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Avec: Heiner Kuhl , Yann Guiguen , Christin Höhne , Eva Kreuz , Kang Du , Christophe Klopp , Céline Lopez-Roques , Elena Santidrian Yebra-Pimentel , Mitica Ciorpac , Jörn Gessner , Daniela Holostenco , Wibke Kleiner , Klaus Kohlmann , Dunja K Lamatsch , Dmitry Prokopov , Anastasia Bestin , Emmanuel Bonpunt , Bastien Debeuf , Pierrick Haffray , Romain Morvezen , Pierre Patrice , Radu Suciu , Ron Dirks , Sven Wuertz , Werner Kloas , Manfred Schartl , Matthias Stöck

Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping.

Frontiers in genetics

Avec: Maria Bernard , Audrey Dehaullon , Guangtu Gao , Katy Paul , Henri Lagarde , Mathieu Charles , Martin Prchal , Jeanne Danon , Lydia Jaffrelo , Charles Poncet , Pierre Patrice , Pierrick Haffray , Edwige Quillet , Mathilde Dupont-Nivet , Yniv Palti , Delphine Lallias , Florence Phocas

Whole-genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass.

Genetics, selection, evolution : GSE

Avec: Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson , Joseph Brunier , Aline Bajek , Boudjema Imarazene , Yoannah François , Olivier Bouchez , Xavier Cousin , Charles Poncet , Thierry Morin , Jean-Sébastien Bruant , Béatrice Chatain , Pierrick Haffray , Florence Phocas , François Allal

APIS: an updated parentage assignment software managing triploids induced from diploid parents.

G3 (Bethesda, Md.)

Avec: Julien Roche , Ronan Griot , François Allal , Mathieu Besson , Pierrick Haffray , Pierre Patrice , Florence Phocas , Marc Vandeputte

GenoTriplo: A SNP genotype calling method for triploids.

PLoS computational biology

Avec: Julien Roche , Mathieu Besson , François Allal , Pierrick Haffray , Pierre Patrice , Marc Vandeputte , Florence Phocas

Réseau de co-auteurs

Florence Phocas 12 collaborations

Anastasia Bestin 10 collaborations

François Allal 8 collaborations

Romain Morvezen 8 collaborations

Marc Vandeputte 7 collaborations

Charles Poncet 6 collaborations

Mathilde Dupont-Nivet 6 collaborations

Yann Guiguen 5 collaborations

Pierre Patrice 5 collaborations

Ronan Griot 4 collaborations

Sophie Brard-Fudulea 4 collaborations

Nicolas Dechamp 4 collaborations

Jonathan D'Ambrosio 4 collaborations

Yoannah François 4 collaborations

Christophe Klopp 4 collaborations

Martin Prchal 3 collaborations

Mathieu Charles 3 collaborations

Olivier Bouchez 3 collaborations

Edwige Quillet 3 collaborations

Jérôme Bugeon 3 collaborations

Florian Enez 3 collaborations

Heiner Kuhl 3 collaborations

Peter T Euclide 3 collaborations

Margot Zahm 3 collaborations

Cécile Donnadieu 3 collaborations

Romain Feron 3 collaborations

Lydia Jaffrelo 3 collaborations

Ming Wen 3 collaborations

Amaury Herpin 3 collaborations

John H Postlethwait 3 collaborations

Werner Kloas 3 collaborations

Sven Wuertz 3 collaborations

Matthias Stöck 3 collaborations

P Haffray 3 collaborations

Thierry Morin 3 collaborations

Jean-Sébastien Bruant 3 collaborations

Joseph Brunier 3 collaborations

Mathieu Besson 3 collaborations

Luca Bargelloni 2 collaborations

Clémence Fraslin 2 collaborations

Maria Bernard 2 collaborations

Aline Bajek 2 collaborations

Carole Blay 2 collaborations

Vincent Petit 2 collaborations

Xavier Cousin 2 collaborations

Geneviève Corraze 2 collaborations

Henri Lagarde 2 collaborations

Delphine Lallias 2 collaborations

Audrey Dehaullon 2 collaborations

Cédric Cabau 2 collaborations

Céline Lopez-Roques 2 collaborations

Carole Iampietro 2 collaborations

Claire Kuchly 2 collaborations

Hugues Parrinello 2 collaborations

Carole Confolent 2 collaborations

Elodie Jouanno 2 collaborations

Taina Rocha de Almeida 2 collaborations

Thomas Lecocq 2 collaborations

Bérénice Schaerlinger 2 collaborations

Dominique Chardard 2 collaborations

Daniel Żarski 2 collaborations

Wesley A Larson 2 collaborations

Serik Timirkhanov 2 collaborations

J D'Ambrosio 2 collaborations

S Brard-Fudulea 2 collaborations

A Bestin 2 collaborations

M Dupont-Nivet 2 collaborations

F Phocas 2 collaborations

Sophie Cariou 2 collaborations

Bruno Peyrou 2 collaborations

Céline Roques 2 collaborations

Manfred Schartl 2 collaborations

Julien Roche 2 collaborations

María Saura 1 collaboration

Armando Caballero 1 collaboration

Enrique Santiago 1 collaboration

Almudena Fernández 1 collaboration

Elisabeth Morales-González 1 collaboration

Jesús Fernández 1 collaboration

Santiago Cabaleiro 1 collaboration

Adrián Millán 1 collaboration

Paulino Martínez 1 collaboration

Christos Palaiokostas 1 collaboration

Martin Kocour 1 collaboration

Muhammad L Aslam 1 collaboration

Ross D Houston 1 collaboration

Kostas Tzokas 1 collaboration

Jean-Sebastien Bruant 1 collaboration

Beatriz Villanueva 1 collaboration

Francine Krieg 1 collaboration

Céline Ciobotaru 1 collaboration

Chris Hozé 1 collaboration

Florent Petitprez 1 collaboration

Marine Milhes 1 collaboration

Jérôme Lluch 1 collaboration

Philippe Hocdé 1 collaboration

Antonio Serradell 1 collaboration

Daniel Montero 1 collaboration

Genciana Terova 1 collaboration

Simona Rimoldi 1 collaboration

Alex Makol 1 collaboration

Félix Acosta 1 collaboration

Silvia Torrecillas 1 collaboration

Guylaine Collewet 1 collaboration

Emilien Segret 1 collaboration

Ana Acin-Perez 1 collaboration

Frederic Cachelou 1 collaboration

Morgan Smits 1 collaboration

Serena Ferraresso 1 collaboration

Giulia Dalla Rovere 1 collaboration

Emilie Vetois 1 collaboration

Jean-François Auvray 1 collaboration

Lucie Genestout 1 collaboration

Rachid Mahla 1 collaboration

Giuseppe Arcangeli 1 collaboration

Christine Paillard 1 collaboration

Alexandre Desgranges 1 collaboration

Jean-Michel Allamellou 1 collaboration

Anne-Sophie Tyran 1 collaboration

R Morvezen 1 collaboration

A Acin Perez 1 collaboration

D Guéméné 1 collaboration

C Poncet 1 collaboration

Enora Prado 1 collaboration

Virginie Nazabal 1 collaboration

David Causeur 1 collaboration

Christophe Eklouh-Molinier 1 collaboration

E Prado 1 collaboration

C Eklouh-Molinier 1 collaboration

F Enez 1 collaboration

D Causeur 1 collaboration

C Blay 1 collaboration

L Labbé 1 collaboration

V Petit 1 collaboration

A Moreac 1 collaboration

G Taupier 1 collaboration

J Bugeon 1 collaboration

G Corraze 1 collaboration

V Nazabal 1 collaboration

Cedric Cabau 1 collaboration

Wes Larson 1 collaboration

Camille Eché 1 collaboration

Sophie Valière 1 collaboration

Hervé Acloque 1 collaboration

Elodie Jouano 1 collaboration

Claire Schraidt 1 collaboration

Mark R Christie 1 collaboration

C Fraslin 1 collaboration

M Charles 1 collaboration

E Quillet 1 collaboration

Christin Höhne 1 collaboration

Eva Kreuz 1 collaboration

Kang Du 1 collaboration

Elena Santidrian Yebra-Pimentel 1 collaboration

Mitica Ciorpac 1 collaboration

Jörn Gessner 1 collaboration

Daniela Holostenco 1 collaboration

Wibke Kleiner 1 collaboration

Klaus Kohlmann 1 collaboration

Dunja K Lamatsch 1 collaboration

Dmitry Prokopov 1 collaboration

Emmanuel Bonpunt 1 collaboration

Bastien Debeuf 1 collaboration

Radu Suciu 1 collaboration

Ron Dirks 1 collaboration

Guangtu Gao 1 collaboration

Katy Paul 1 collaboration

Jeanne Danon 1 collaboration

Yniv Palti 1 collaboration

Emilie Delpuech 1 collaboration

Boudjema Imarazene 1 collaboration

Béatrice Chatain 1 collaboration