Delineating the interplay between oncogenic pathways and immunity in anaplastic Wilms tumors.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
30 Nov 2023
Historique:
received: 13 01 2023
accepted: 06 11 2023
medline: 4 12 2023
pubmed: 1 12 2023
entrez: 30 11 2023
Statut: epublish

Résumé

Wilms tumors are highly curable in up to 90% of cases with a combination of surgery and radio-chemotherapy, but treatment-resistant types such as diffuse anaplastic Wilms tumors pose significant therapeutic challenges. Our multi-omics profiling unveils a distinct desert-like diffuse anaplastic Wilms tumor subtype marked by immune/stromal cell depletion, TP53 alterations, and cGAS-STING pathway downregulation, accounting for one-third of all diffuse anaplastic cases. This subtype, also characterized by reduced CD8 and CD3 infiltration and active oncogenic pathways involving histone deacetylase and DNA repair, correlates with poor clinical outcomes. These oncogenic pathways are found to be conserved in anaplastic Wilms tumor cell models. We identify histone deacetylase and/or WEE1 inhibitors as potential therapeutic vulnerabilities in these tumors, which might also restore tumor immunogenicity and potentially enhance the effects of immunotherapy. These insights offer a foundation for predicting outcomes and personalizing treatment strategies for aggressive pediatric Wilms tumors, tailored to individual immunological landscapes.

Identifiants

pubmed: 38036539
doi: 10.1038/s41467-023-43290-3
pii: 10.1038/s41467-023-43290-3
pmc: PMC10689851
doi:

Substances chimiques

Histone Deacetylases EC 3.5.1.98

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

7884

Subventions

Organisme : NCI NIH HHS
ID : P30 CA016672
Pays : United States
Organisme : NCI NIH HHS
ID : U54 CA096300
Pays : United States

Informations de copyright

© 2023. The Author(s).

Références

Science. 2007 May 18;316(5827):1043-6
pubmed: 17510365
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W452-7
pubmed: 22689647
Nat Commun. 2013;4:2612
pubmed: 24113773
Nat Biotechnol. 2019 Jul;37(7):773-782
pubmed: 31061481
Science. 1990 Nov 30;250(4985):1233-8
pubmed: 1978757
J Exp Med. 2022 Jan 3;219(1):
pubmed: 34825915
Br J Cancer. 2019 Jan;120(1):45-53
pubmed: 30413828
Nat Genet. 1994 May;7(1):91-7
pubmed: 8075648
Science. 2019 Dec 6;366(6470):1247-1251
pubmed: 31806814
Nat Rev Cancer. 2019 Jun;19(6):307-325
pubmed: 31092904
Innovation (Camb). 2021 Jul 01;2(3):100141
pubmed: 34557778
Cell Rep. 2022 May 17;39(7):110814
pubmed: 35584676
N Engl J Med. 2016 Jan 14;374(2):135-45
pubmed: 26536169
Genome Biol. 2011;12(4):R41
pubmed: 21527027
Pediatr Blood Cancer. 2013 Jun;60(6):994-1000
pubmed: 23255438
Blood. 2006 Mar 1;107(5):2170-9
pubmed: 16293602
Sci Adv. 2022 Oct 7;8(40):eabo8043
pubmed: 36197969
Cancers (Basel). 2021 Jun 23;13(13):
pubmed: 34201787
PLoS One. 2014 Oct 14;9(10):e109924
pubmed: 25313908
Theory Biosci. 2012 Dec;131(4):281-5
pubmed: 22872506
Cell Rep. 2017 Jul 25;20(4):854-867
pubmed: 28746871
Genome Biol. 2021 Jan 4;22(1):7
pubmed: 33397444
Bioinformatics. 2011 Jun 15;27(12):1739-40
pubmed: 21546393
Clin Transl Med. 2021 Dec;11(12):e601
pubmed: 34936229
Curr Opin Pediatr. 2021 Feb 1;33(1):40-48
pubmed: 33394739
J Clin Oncol. 2006 May 20;24(15):2352-8
pubmed: 16710034
J Clin Pathol. 2010 Feb;63(2):102-9
pubmed: 19687012
Nat Methods. 2015 May;12(5):453-7
pubmed: 25822800
Cancer Cell. 2015 Feb 9;27(2):298-311
pubmed: 25670083
Hum Pathol. 1988 Oct;19(10):1199-209
pubmed: 2844645
Trends Immunol. 2019 Apr;40(4):328-344
pubmed: 30853334
Cancer Cell. 2014 Sep 8;26(3):319-330
pubmed: 25155756
Mol Ther Oncolytics. 2021 Jul 13;22:454-467
pubmed: 34553032
Oncotarget. 2012 Mar;3(3):327-35
pubmed: 22470196
Genes Chromosomes Cancer. 2008 Jun;47(6):461-70
pubmed: 18311776
Front Cell Dev Biol. 2021 Oct 18;9:762651
pubmed: 34733856
Nucleic Acids Res. 2010 Sep;38(16):e164
pubmed: 20601685
Cancer Res. 2019 Jul 15;79(14):3762-3775
pubmed: 31123088
J Clin Oncol. 2016 Dec 20;34(36):4354-4361
pubmed: 27998224
Pediatr Blood Cancer. 2022 Feb;69(2):e29401
pubmed: 34693628
Clin Cancer Res. 2023 Apr 3;29(7):1279-1291
pubmed: 36374555
Leukemia. 2015 Apr;29(4):807-18
pubmed: 25283841
Clin Cancer Res. 2016 Nov 15;22(22):5582-5591
pubmed: 27702824
Gastroenterology. 2017 Sep;153(3):812-826
pubmed: 28624577
Genome Biol. 2016 Oct 20;17(1):218
pubmed: 27765066
Nat Genet. 2017 Oct;49(10):1487-1494
pubmed: 28825729
Nature. 2009 Nov 5;462(7269):108-12
pubmed: 19847166
J Pathol Clin Res. 2017 Aug 14;3(4):234-248
pubmed: 29085664
Nature. 2013 Jul 4;499(7456):43-9
pubmed: 23792563
Sci Rep. 2017 Jan 19;7:40752
pubmed: 28102344
Nucleic Acids Res. 2013 Jan;41(Database issue):D955-61
pubmed: 23180760
Front Biosci (Elite Ed). 2010 Jan 01;2(1):241-9
pubmed: 20036874
Front Oncol. 2018 Mar 29;8:92
pubmed: 29651407
Nat Rev Dis Primers. 2021 Oct 14;7(1):75
pubmed: 34650095
Am J Pathol. 1996 May;148(5):1577-89
pubmed: 8623926
PLoS One. 2007 Nov 21;2(11):e1195
pubmed: 18030330
Cell. 2021 Oct 14;184(21):5482-5496.e28
pubmed: 34597583
Hepatology. 2014 Jun;59(6):2228-37
pubmed: 24443104
J Clin Oncol. 2015 Oct 20;33(30):3409-15
pubmed: 25964244
Science. 2007 Feb 2;315(5812):642-5
pubmed: 17204608
Cancer Genet. 2012 Jun;205(6):319-26
pubmed: 22749038
Cancer Cell. 2021 Apr 12;39(4):494-508.e5
pubmed: 33545063
J Med Genet. 2006 Sep;43(9):705-15
pubmed: 16690728
Cold Spring Harb Perspect Biol. 2016 Apr 01;8(4):a019521
pubmed: 27037415
Oncogene. 2008 Jul 31;27(33):4625-32
pubmed: 18391980
Sci Signal. 2013 Apr 02;6(269):pl1
pubmed: 23550210
Clin Transl Radiat Oncol. 2018 Jun 08;12:16-20
pubmed: 30073210
Oncogene. 2021 Mar;40(10):1836-1850
pubmed: 33564072
Mol Ther. 2019 May 8;27(5):933-946
pubmed: 30879952
J Clin Oncol. 2016 Dec 20;34(36):4371-4380
pubmed: 27601554
Genome Biol. 2014 Mar 03;15(3):R47
pubmed: 24580837
J Immunother Cancer. 2021 Feb;9(2):
pubmed: 33637599
Cell Rep. 2018 Jun 12;23(11):3262-3274
pubmed: 29898397
Cancer Res. 1999 Aug 15;59(16):3880-2
pubmed: 10463574
Bioinformatics. 2021 Apr 1;36(22-23):5539-5541
pubmed: 33315104
Clin Cancer Res. 2019 Aug 15;25(16):5002-5014
pubmed: 30837276
Cell. 2016 Jul 28;166(3):740-754
pubmed: 27397505

Auteurs

Xiaoping Su (X)

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Xiaofan Lu (X)

Department of Cancer and Functional Genomics, Institute of Genetics and Molecular and Cellular Biology, CNRS/INSERM/UNISTRA, Illkirch, France.
Research Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, China.

Sehrish Khan Bazai (SK)

Department of Cancer and Functional Genomics, Institute of Genetics and Molecular and Cellular Biology, CNRS/INSERM/UNISTRA, Illkirch, France.

Linda Dainese (L)

Department of Pathology, Hôpital Armand Trousseau, Assistance-Publique Hôpitaux de Paris, Sorbonne Université, Paris, France.
UF Tumorothèque HUEP, Hôpital Armand Trousseau, Assistance-Publique Hôpitaux de Paris, Sorbonne Université, Paris, France.
Centre de Recherche Saint-Antoine (CRSA), INSERM, Sorbonne Université, UMR_S .938, Paris, France.

Arnauld Verschuur (A)

Department of Pediatric Oncology, Hôpital d'Enfants de La Timone, F-13005, Marseille, France.

Benoit Dumont (B)

Centre Léon Bérard, Institut d'Hématologie et d'Oncologie Pédiatrique (IHOPe), Lyon, France.

Roger Mouawad (R)

Department of Medical Oncology, Groupe Hospitalier Pitié-Salpêtrière, Assistance-Publique Hôpitaux de Paris, Paris, France.

Li Xu (L)

Research Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, China.

Wenxuan Cheng (W)

Research Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, China.

Fangrong Yan (F)

Research Center of Biostatistics and Computational Pharmacy, China Pharmaceutical University, Nanjing, China.

Sabine Irtan (S)

Department of Pediaric Surgery, AP-HP, Hôpital Armand Trousseau, Sorbonne Université, Paris, France.

Véronique Lindner (V)

Department of Pathology, CHRU Strasbourg, Strasbourg, France.

Catherine Paillard (C)

Department of Pediatric Onco-hematology, CHRU Strasbourg, Strasbourg Université, Strasbourg, France.

Yves Le Bouc (Y)

Centre de Recherche Saint-Antoine (CRSA), INSERM, Sorbonne Université, UMR_S .938, Paris, France.

Aurore Coulomb (A)

Department of Pathology, Hôpital Armand Trousseau, Assistance-Publique Hôpitaux de Paris, Sorbonne Université, Paris, France. coulomb@aphp.fr.
UF Tumorothèque HUEP, Hôpital Armand Trousseau, Assistance-Publique Hôpitaux de Paris, Sorbonne Université, Paris, France. coulomb@aphp.fr.
Centre de Recherche Saint-Antoine (CRSA), INSERM, Sorbonne Université, UMR_S .938, Paris, France. coulomb@aphp.fr.

Gabriel G Malouf (GG)

Department of Cancer and Functional Genomics, Institute of Genetics and Molecular and Cellular Biology, CNRS/INSERM/UNISTRA, Illkirch, France. maloufg@igbmc.fr.
Department of Medical Oncology, Institut de Cancérologie de Strasbourg, Strasbourg University, Strasbourg, France. maloufg@igbmc.fr.

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