Immune checkpoints are predominantly co-expressed by clonally expanded CD4

Cancer Flow cytometry Immune checkpoints Immunology Immunotherapy Single-cell RNA-Seq T-cells TCR repertoire

Journal

Journal of experimental & clinical cancer research : CR
ISSN: 1756-9966
Titre abrégé: J Exp Clin Cancer Res
Pays: England
ID NLM: 8308647

Informations de publication

Date de publication:
06 Dec 2023
Historique:
received: 14 07 2023
accepted: 11 11 2023
medline: 11 12 2023
pubmed: 7 12 2023
entrez: 7 12 2023
Statut: epublish

Résumé

In addition to anti-PD(L)1, anti-CTLA-4 and anti-LAG-3, novel immune checkpoint proteins (ICP)-targeted antibodies have recently failed to demonstrate significant efficacy in clinical trials. In these trials, patients were enrolled without screening for drug target expression. Although these novel ICP-targeted antibodies were expected to stimulate anti-tumor CD8 + T-cells, the rationale for their target expression in human tumors relied on pre-clinical IHC stainings and transcriptomic data, which are poorly sensitive and specific techniques for assessing membrane protein expression on immune cell subsets. Our aim was to describe ICP expression on intratumoral T-cells from primary solid tumors to better design upcoming neoadjuvant cancer immunotherapy trials. We prospectively performed multiparameter flow cytometry and single-cell RNA sequencing (scRNA-Seq) paired with TCR sequencing on freshly resected human primary tumors of various histological types to precisely determine ICP expression levels within T-cell subsets. Within a given tumor type, we found high inter-individual variability for tumor infiltrating CD45 + cells and for T-cells subsets. The proportions of CD8 Tumor histology alone does not reveal the complete picture of the tumor immune contexture. In clinical trials, assumptions regarding target expression should rely on more sensitive and specific techniques than conventional IHC or transcriptomics. Flow cytometry and scRNAseq accurately characterize ICP expression within immune cell subsets. Much like in hematology, flow cytometry can better describe the immune contexture of solid tumors, offering the opportunity to guide patient treatment according to drug target expression rather than tumor histological type.

Sections du résumé

BACKGROUND BACKGROUND
In addition to anti-PD(L)1, anti-CTLA-4 and anti-LAG-3, novel immune checkpoint proteins (ICP)-targeted antibodies have recently failed to demonstrate significant efficacy in clinical trials. In these trials, patients were enrolled without screening for drug target expression. Although these novel ICP-targeted antibodies were expected to stimulate anti-tumor CD8 + T-cells, the rationale for their target expression in human tumors relied on pre-clinical IHC stainings and transcriptomic data, which are poorly sensitive and specific techniques for assessing membrane protein expression on immune cell subsets. Our aim was to describe ICP expression on intratumoral T-cells from primary solid tumors to better design upcoming neoadjuvant cancer immunotherapy trials.
METHODS METHODS
We prospectively performed multiparameter flow cytometry and single-cell RNA sequencing (scRNA-Seq) paired with TCR sequencing on freshly resected human primary tumors of various histological types to precisely determine ICP expression levels within T-cell subsets.
RESULTS RESULTS
Within a given tumor type, we found high inter-individual variability for tumor infiltrating CD45 + cells and for T-cells subsets. The proportions of CD8
CONCLUSIONS CONCLUSIONS
Tumor histology alone does not reveal the complete picture of the tumor immune contexture. In clinical trials, assumptions regarding target expression should rely on more sensitive and specific techniques than conventional IHC or transcriptomics. Flow cytometry and scRNAseq accurately characterize ICP expression within immune cell subsets. Much like in hematology, flow cytometry can better describe the immune contexture of solid tumors, offering the opportunity to guide patient treatment according to drug target expression rather than tumor histological type.

Identifiants

pubmed: 38057799
doi: 10.1186/s13046-023-02897-6
pii: 10.1186/s13046-023-02897-6
pmc: PMC10699039
doi:

Substances chimiques

Receptors, Antigen, T-Cell 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

333

Informations de copyright

© 2023. The Author(s).

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Auteurs

Delphine Bredel (D)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.

Edi Tihic (E)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.

Séverine Mouraud (S)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.

François-Xavier Danlos (FX)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.
Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Gustave Roussy, Département d'Innovation Thérapeutique Et d'Essais Précoces (DITEP), 94805, Villejuif, France.

Sandrine Susini (S)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.

Marine Aglave (M)

Gustave Roussy, Plateforme de bioinformatique, F-94805, Villejuif, France.

Alexia Alfaro (A)

Gustave Roussy, Université Paris-Saclay, UMS 23/3655, Plateforme Imagerie Et Cytométrie, Villejuif, France.

Chifaou Mohamed-Djalim (C)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.

Mathieu Rouanne (M)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.
Department of Microbiology and Immunology, Vagelos College of Physicians and Surgeons, Columbia University, New York, USA.

Héloise Halse (H)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1163, Institut Imagine, Université Paris Descartes, 75015, Paris, France.

Amélie Bigorgne (A)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1163, Institut Imagine, Université Paris Descartes, 75015, Paris, France.

Lambros Tselikas (L)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.
Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Gustave Roussy, Université Paris Saclay, Département d'Anesthésie, Chirurgie et Imagerie Interventionnelle, F-94805, Villejuif, France.

Stéphane Dalle (S)

Department of Dermatology, HCL Cancer Institute, Lyon Cancer Research Center, 69495, Lyon, France.

Dana M Hartl (DM)

Gustave Roussy, Université Paris Saclay, Département d'Anesthésie, Chirurgie et Imagerie Interventionnelle, F-94805, Villejuif, France.

Eric Baudin (E)

Gustave Roussy, Département d'Oncologie Médicale, F-94805, Villejuif, France.

Catherine Guettier (C)

Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Service d'Anatomie Pathologique, Hôpital Bicêtre, AP-HP, 94270, Le Kremlin-Bicêtre, France.
UMR-S 1193, Hôpital Paul Brousse Université Paris Saclay, 94800, Villejuif, France.

Eric Vibert (E)

UMR-S 1193, Hôpital Paul Brousse Université Paris Saclay, 94800, Villejuif, France.
Centre Hépato-Biliaire, Hôpital Paul Brousse, AP-HP, 94800, Villejuif, France.

Olivier Rosmorduc (O)

Centre Hépato-Biliaire, Hôpital Paul Brousse, AP-HP, 94800, Villejuif, France.

Caroline Robert (C)

Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Gustave Roussy, Département d'Oncologie Médicale, F-94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U981, Gustave Roussy, 94805, Villejuif, France.

Sophie Ferlicot (S)

Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Service d'Anatomie Pathologique, Hôpital Bicêtre, AP-HP, 94270, Le Kremlin-Bicêtre, France.
Centre National de Recherche Scientifique (CNRS), Gustave Roussy, Université Paris-Saclay, UMR 9019, 94805, Villejuif, France.

Bastien Parier (B)

Service de Chirurgie Urologique, Hôpital Bicêtre, AP-HP, Le Kremlin-Bicêtre, France.

Laurence Albiges (L)

Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Gustave Roussy, Département d'Oncologie Médicale, F-94805, Villejuif, France.

Vincent Thomas de Montpreville (VT)

Département de Pathologie, Hôpital Marie-Lannelongue, Le Plessis-Robinson, France.

Benjamin Besse (B)

Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Gustave Roussy, Département d'Oncologie Médicale, F-94805, Villejuif, France.

Olaf Mercier (O)

Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.
Service de Chirurgie Thoracique Et Transplantation Cardio-Pulmonaire, Hôpital Marie-Lannelongue, UMR_S 999 INSERM, Université Paris-Saclay, GHPSJ, 92350, Le Plessis-Robinson, France.

Caroline Even (C)

Gustave Roussy, Département d'Oncologie Médicale, F-94805, Villejuif, France.

Ingrid Breuskin (I)

Gustave Roussy, Université Paris Saclay, Département d'Anesthésie, Chirurgie et Imagerie Interventionnelle, F-94805, Villejuif, France.

Marion Classe (M)

Gustave Roussy, Département de Biopathologie, F-94805, Villejuif, France.

Camélia Radulescu (C)

Département de Pathologie, Hôpital Foch, UVSQ, Université Paris-Saclay, 92150, Suresnes, France.

Thierry Lebret (T)

Département d'Urologie, Hôpital Foch, UVSQ-Université Paris-Saclay, 92150, Suresnes, France.

Patricia Pautier (P)

Gustave Roussy, Département d'Oncologie Médicale, F-94805, Villejuif, France.

Sébastien Gouy (S)

Gustave Roussy, Université Paris Saclay, Département d'Anesthésie, Chirurgie et Imagerie Interventionnelle, F-94805, Villejuif, France.

Jean-Yves Scoazec (JY)

Gustave Roussy, Département de Biopathologie, F-94805, Villejuif, France.

Laurence Zitvogel (L)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.
Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France.

Aurélien Marabelle (A)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France. aurelien.marabelle@gustaveroussy.fr.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France. aurelien.marabelle@gustaveroussy.fr.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France. aurelien.marabelle@gustaveroussy.fr.
Université Paris-Saclay, Faculté de Médecine, 94270, Le Kremlin-Bicêtre, France. aurelien.marabelle@gustaveroussy.fr.
Gustave Roussy, Département d'Innovation Thérapeutique Et d'Essais Précoces (DITEP), 94805, Villejuif, France. aurelien.marabelle@gustaveroussy.fr.

Mélodie Bonvalet (M)

Gustave Roussy, 114 Rue Édouard Vaillant, 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) U1015, Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), 94805, Villejuif, France.
Institut National de La Santé Et de La Recherche Médicale (INSERM) CIC1428, Centre d'Investigation Clinique BIOTHERIS, 94805, Villejuif, France.

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