ZBP1 and TRIF trigger lethal necroptosis in mice lacking caspase-8 and TNFR1.


Journal

Cell death and differentiation
ISSN: 1476-5403
Titre abrégé: Cell Death Differ
Pays: England
ID NLM: 9437445

Informations de publication

Date de publication:
28 Mar 2024
Historique:
received: 16 10 2023
accepted: 20 03 2024
revised: 13 03 2024
medline: 29 3 2024
pubmed: 29 3 2024
entrez: 29 3 2024
Statut: aheadofprint

Résumé

Necroptosis is a lytic form of cell death that is mediated by the kinase RIPK3 and the pseudokinase MLKL when caspase-8 is inhibited downstream of death receptors, toll-like receptor 3 (TLR3), TLR4, and the intracellular Z-form nucleic acid sensor ZBP1. Oligomerization and activation of RIPK3 is driven by interactions with the kinase RIPK1, the TLR adaptor TRIF, or ZBP1. In this study, we use immunohistochemistry (IHC) and in situ hybridization (ISH) assays to generate a tissue atlas characterizing RIPK1, RIPK3, Mlkl, and ZBP1 expression in mouse tissues. RIPK1, RIPK3, and Mlkl were co-expressed in most immune cell populations, endothelial cells, and many barrier epithelia. ZBP1 was expressed in many immune populations, but had more variable expression in epithelia compared to RIPK1, RIPK3, and Mlkl. Intriguingly, expression of ZBP1 was elevated in Casp8

Identifiants

pubmed: 38548850
doi: 10.1038/s41418-024-01286-6
pii: 10.1038/s41418-024-01286-6
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2024. The Author(s).

Références

Vercammen D, Beyaert R, Denecker G, Goossens V, Van Loo G, Declercq W, et al. Inhibition of caspases increases the sensitivity of L929 cells to necrosis mediated by tumor necrosis factor. J Exp Med. 1998;187:1477–85.
pubmed: 9565639 pmcid: 2212268 doi: 10.1084/jem.187.9.1477
Vercammen D, Brouckaert G, Denecker G, Van de Craen M, Declercq W, Fiers W, et al. Dual signaling of the Fas receptor: initiation of both apoptotic and necrotic cell death pathways. J Exp Med. 1998;188:919–30.
pubmed: 9730893 pmcid: 2213397 doi: 10.1084/jem.188.5.919
Holler N, Zaru R, Micheau O, Thome M, Attinger A, Valitutti S, et al. Fas triggers an alternative, caspase-8-independent cell death pathway using the kinase RIP as effector molecule. Nat Immunol. 2000;1:489–95.
pubmed: 11101870 doi: 10.1038/82732
Degterev A, Hitomi J, Germscheid M, Ch’en IL, Korkina O, Teng X, et al. Identification of RIP1 kinase as a specific cellular target of necrostatins. Nat Chem Biol. 2008;4:313–21.
pubmed: 18408713 pmcid: 5434866 doi: 10.1038/nchembio.83
Oberst A, Dillon CP, Weinlich R, McCormick LL, Fitzgerald P, Pop C, et al. Catalytic activity of the caspase-8-FLIP(L) complex inhibits RIPK3-dependent necrosis. Nature. 2011;471:363–7.
pubmed: 21368763 pmcid: 3077893 doi: 10.1038/nature09852
Kaiser WJ, Upton JW, Long AB, Livingston-Rosanoff D, Daley-Bauer LP, Hakem R, et al. RIP3 mediates the embryonic lethality of caspase-8-deficient mice. Nature. 2011;471:368–72.
pubmed: 21368762 pmcid: 3060292 doi: 10.1038/nature09857
Lin Y, Devin A, Rodriguez Y, Liu ZG. Cleavage of the death domain kinase RIP by caspase-8 prompts TNF-induced apoptosis. Genes Dev. 1999;13:2514–26.
pubmed: 10521396 pmcid: 317073 doi: 10.1101/gad.13.19.2514
Newton K, Wickliffe KE, Dugger DL, Maltzman A, Roose-Girma M, Dohse M, et al. Cleavage of RIPK1 by caspase-8 is crucial for limiting apoptosis and necroptosis. Nature. 2019;574:428–31.
pubmed: 31511692 doi: 10.1038/s41586-019-1548-x
Lalaoui N, Boyden SE, Oda H, Wood GM, Stone DL, Chau D, et al. Mutations that prevent caspase cleavage of RIPK1 cause autoinflammatory disease. Nature. 2020;577:103–8.
pubmed: 31827281 doi: 10.1038/s41586-019-1828-5
Tao P, Sun J, Wu Z, Wang S, Wang J, Li W, et al. A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1. Nature. 2020;577:109–14.
pubmed: 31827280 doi: 10.1038/s41586-019-1830-y
Cho YS, Challa S, Moquin D, Genga R, Ray TD, Guildford M, et al. Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation. Cell. 2009;137:1112–23.
pubmed: 19524513 pmcid: 2727676 doi: 10.1016/j.cell.2009.05.037
He S, Wang L, Miao L, Wang T, Du F, Zhao L, et al. Receptor interacting protein kinase-3 determines cellular necrotic response to TNF-alpha. Cell. 2009;137:1100–11.
pubmed: 19524512 doi: 10.1016/j.cell.2009.05.021
Murphy JM. The Killer Pseudokinase Mixed Lineage Kinase Domain-Like Protein (MLKL). Cold Spring Harb Perspect Biol. 2020;12:a036376.
pubmed: 31712266 pmcid: 7397827 doi: 10.1101/cshperspect.a036376
Newton K, Wickliffe KE, Maltzman A, Dugger DL, Strasser A, Pham VC, et al. RIPK1 inhibits ZBP1-driven necroptosis during development. Nature. 2016;540:129–33.
pubmed: 27819682 doi: 10.1038/nature20559
He S, Liang Y, Shao F, Wang X. Toll-like receptors activate programmed necrosis in macrophages through a receptor-interacting kinase-3-mediated pathway. Proc Natl Acad Sci USA. 2011;108:20054–9.
pubmed: 22123964 pmcid: 3250173 doi: 10.1073/pnas.1116302108
Kaiser WJ, Sridharan H, Huang C, Mandal P, Upton JW, Gough PJ, et al. Toll-like receptor 3-mediated necrosis via TRIF, RIP3, and MLKL. J Biol Chem. 2013;288:31268–79.
pubmed: 24019532 pmcid: 3829437 doi: 10.1074/jbc.M113.462341
DeAntoneo C, Herbert A, Balachandran S. Z-form nucleic acid-binding protein 1 (ZBP1) as a sensor of viral and cellular Z-RNAs: walking the razor’s edge. Curr Opin Immunol. 2023;83:102347.
pubmed: 37276820 doi: 10.1016/j.coi.2023.102347
Zhang H, Zhou X, McQuade T, Li J, Chan FK, Zhang J. Functional complementation between FADD and RIP1 in embryos and lymphocytes. Nature. 2011;471:373–6.
pubmed: 21368761 pmcid: 3072026 doi: 10.1038/nature09878
Dillon CP, Weinlich R, Rodriguez DA, Cripps JG, Quarato G, Gurung P, et al. RIPK1 blocks early postnatal lethality mediated by caspase-8 and RIPK3. Cell. 2014;157:1189–202.
pubmed: 24813850 pmcid: 4068710 doi: 10.1016/j.cell.2014.04.018
Kaiser WJ, Daley-Bauer LP, Thapa RJ, Mandal P, Berger SB, Huang C, et al. RIP1 suppresses innate immune necrotic as well as apoptotic cell death during mammalian parturition. Proc Natl Acad Sci USA. 2014;111:7753–8.
pubmed: 24821786 pmcid: 4040608 doi: 10.1073/pnas.1401857111
Rickard JA, O’Donnell JA, Evans JM, Lalaoui N, Poh AR, Rogers T, et al. RIPK1 regulates RIPK3-MLKL-driven systemic inflammation and emergency hematopoiesis. Cell. 2014;157:1175–88.
pubmed: 24813849 doi: 10.1016/j.cell.2014.04.019
Alvarez-Diaz S, Dillon CP, Lalaoui N, Tanzer MC, Rodriguez DA, Lin A, et al. The Pseudokinase MLKL and the Kinase RIPK3 Have Distinct Roles in Autoimmune Disease Caused by Loss of Death-Receptor-Induced Apoptosis. Immunity. 2016;45:513–26.
pubmed: 27523270 pmcid: 5040700 doi: 10.1016/j.immuni.2016.07.016
Fritsch M, Gunther SD, Schwarzer R, Albert MC, Schorn F, Werthenbach JP, et al. Caspase-8 is the molecular switch for apoptosis, necroptosis and pyroptosis. Nature. 2019;575:683–7.
pubmed: 31748744 doi: 10.1038/s41586-019-1770-6
Kang TB, Ben-Moshe T, Varfolomeev EE, Pewzner-Jung Y, Yogev N, Jurewicz A, et al. Caspase-8 serves both apoptotic and nonapoptotic roles. J Immunol. 2004;173:2976–84.
pubmed: 15322156 doi: 10.4049/jimmunol.173.5.2976
Upton JW, Kaiser WJ, Mocarski ES. DAI/ZBP1/DLM-1 complexes with RIP3 to mediate virus-induced programmed necrosis that is targeted by murine cytomegalovirus vIRA. Cell Host Microbe. 2012;11:290–7.
pubmed: 22423968 pmcid: 3531981 doi: 10.1016/j.chom.2012.01.016
Schwarzer R, Jiao H, Wachsmuth L, Tresch A, Pasparakis M. FADD and Caspase-8 Regulate Gut Homeostasis and Inflammation by Controlling MLKL- and GSDMD-Mediated Death of Intestinal Epithelial Cells. Immunity. 2020;52:978–93.
pubmed: 32362323 doi: 10.1016/j.immuni.2020.04.002
Tisch N, Mogler C, Stojanovic A, Luck R, Korhonen EA, Ellerkmann A, et al. Caspase-8 in endothelial cells maintains gut homeostasis and prevents small bowel inflammation in mice. EMBO Mol Med. 2022;14:e14121.
pubmed: 35491615 pmcid: 9174885 doi: 10.15252/emmm.202114121
Bader SM, Preston SP, Saliba K, Lipszyc A, Grant ZL, Mackiewicz L, et al. Endothelial Caspase-8 prevents fatal necroptotic hemorrhage caused by commensal bacteria. Cell Death Differ. 2022;30:27–36.
pubmed: 35871233 pmcid: 9883523 doi: 10.1038/s41418-022-01042-8
Newton K, Dugger DL, Wickliffe KE, Kapoor N, de Almagro MC, Vucic D, et al. Activity of protein kinase RIPK3 determines whether cells die by necroptosis or apoptosis. Science. 2014;343:1357–60.
pubmed: 24557836 doi: 10.1126/science.1249361
Kelliher MA, Grimm S, Ishida Y, Kuo F, Stanger BZ, Leder P. The death domain kinase RIP mediates the TNF-induced NF-kappaB signal. Immunity. 1998;8:297–303.
pubmed: 9529147 doi: 10.1016/S1074-7613(00)80535-X
Murphy JM, Czabotar PE, Hildebrand JM, Lucet IS, Zhang JG, Alvarez-Diaz S, et al. The pseudokinase MLKL mediates necroptosis via a molecular switch mechanism. Immunity. 2013;39:443–53.
pubmed: 24012422 doi: 10.1016/j.immuni.2013.06.018
Takaoka A, Wang Z, Choi MK, Yanai H, Negishi H, Ban T, et al. DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response. Nature. 2007;448:501–5.
pubmed: 17618271 doi: 10.1038/nature06013
Hovnanian A, Rebouillat D, Mattei MG, Levy ER, Marie I, Monaco AP, et al. The human 2’,5’-oligoadenylate synthetase locus is composed of three distinct genes clustered on chromosome 12q24.2 encoding the 100-, 69-, and 40-kDa forms. Genomics. 1998;52:267–77.
pubmed: 9790745 doi: 10.1006/geno.1998.5443
de Veer MJ, Holko M, Frevel M, Walker E, Der S, Paranjape JM, et al. Functional classification of interferon-stimulated genes identified using microarrays. J Leukoc Biol. 2001;69:912–20.
pubmed: 11404376 doi: 10.1189/jlb.69.6.912
Katsoulidis E, Carayol N, Woodard J, Konieczna I, Majchrzak-Kita B, Jordan A, et al. Role of Schlafen 2 (SLFN2) in the generation of interferon alpha-induced growth inhibitory responses. J Biol Chem. 2009;284:25051–64.
pubmed: 19592487 pmcid: 2757209 doi: 10.1074/jbc.M109.030445
Chen W, Zhou Z, Li L, Zhong CQ, Zheng X, Wu X, et al. Diverse sequence determinants control human and mouse receptor interacting protein 3 (RIP3) and mixed lineage kinase domain-like (MLKL) interaction in necroptotic signaling. J Biol Chem. 2013;288:16247–61.
pubmed: 23612963 pmcid: 3675564 doi: 10.1074/jbc.M112.435545
Taraborrelli L, Peltzer N, Montinaro A, Kupka S, Rieser E, Hartwig T, et al. LUBAC prevents lethal dermatitis by inhibiting cell death induced by TNF, TRAIL and CD95L. Nat Commun. 2018;9:3910.
pubmed: 30254289 pmcid: 6156229 doi: 10.1038/s41467-018-06155-8
Bittner S, Knoll G, Ehrenschwender M. Death receptor 3 mediates necroptotic cell death. Cell Mol Life Sci. 2017;74:543–54.
pubmed: 27592300 doi: 10.1007/s00018-016-2355-2
Roderick JE, Hermance N, Zelic M, Simmons MJ, Polykratis A, Pasparakis M, et al. Hematopoietic RIPK1 deficiency results in bone marrow failure caused by apoptosis and RIPK3-mediated necroptosis. Proc Natl Acad Sci USA. 2014;111:14436–41.
pubmed: 25246544 pmcid: 4209989 doi: 10.1073/pnas.1409389111
Newton K, Sun X, Dixit VM. Kinase RIP3 is dispensable for normal NF-kappa Bs, signaling by the B-cell and T-cell receptors, tumor necrosis factor receptor 1, and Toll-like receptors 2 and 4. Mol Cell Biol. 2004;24:1464–9.
pubmed: 14749364 pmcid: 344190 doi: 10.1128/MCB.24.4.1464-1469.2004
Filliol A, Piquet-Pellorce C, Le Seyec J, Farooq M, Genet V, Lucas-Clerc C, et al. RIPK1 protects from TNF-alpha-mediated liver damage during hepatitis. Cell Death Dis. 2016;7:e2462.
pubmed: 27831558 pmcid: 5260888 doi: 10.1038/cddis.2016.362
Dermentzaki G, Politi KA, Lu L, Mishra V, Perez-Torres EJ, Sosunov AA, et al. Deletion of Ripk3 Prevents Motor Neuron Death In Vitro but not In Vivo. eNeuro. 2019;6:ENEURO.0308-18.2018.
pubmed: 30815534 pmcid: 6391588 doi: 10.1523/ENEURO.0308-18.2018
Wang T, Perera ND, Chiam MDF, Cuic B, Wanniarachchillage N, Tomas D, et al. Necroptosis is dispensable for motor neuron degeneration in a mouse model of ALS. Cell Death Differ. 2020;27:1728–39.
pubmed: 31745214 doi: 10.1038/s41418-019-0457-8
Dominguez S, Varfolomeev E, Brendza R, Stark K, Tea J, Imperio J, et al. Genetic inactivation of RIP1 kinase does not ameliorate disease in a mouse model of ALS. Cell Death Differ. 2021;28:915–31.
pubmed: 32994544 doi: 10.1038/s41418-020-00625-7
Daniels BP, Kofman SB, Smith JR, Norris GT, Snyder AG, Kolb JP, et al. The Nucleotide Sensor ZBP1 and Kinase RIPK3 Induce the Enzyme IRG1 to Promote an Antiviral Metabolic State in Neurons. Immunity. 2019;50:64–76.
pubmed: 30635240 pmcid: 6342485 doi: 10.1016/j.immuni.2018.11.017
Peschon JJ, Torrance DS, Stocking KL, Glaccum MB, Otten C, Willis CR, et al. TNF receptor-deficient mice reveal divergent roles for p55 and p75 in several models of inflammation. J Immunol. 1998;160:943–52.
pubmed: 9551933 doi: 10.4049/jimmunol.160.2.943
Yamamoto M, Sato S, Hemmi H, Hoshino K, Kaisho T, Sanjo H, et al. Role of adaptor TRIF in the MyD88-independent toll-like receptor signaling pathway. Science. 2003;301:640–3.
pubmed: 12855817 doi: 10.1126/science.1087262
Webster JD, Solon M, Haller S, Newton K. Detection of Necroptosis by Phospho-RIPK3 Immunohistochemical Labeling. Methods Mol Biol. 2018;1857:153–60.
pubmed: 30136239 doi: 10.1007/978-1-4939-8754-2_15
Heger K, Wickliffe KE, Ndoja A, Zhang J, Murthy A, Dugger DL, et al. OTULIN limits cell death and inflammation by deubiquitinating LUBAC. Nature. 2018;559:120–4.
pubmed: 29950720 doi: 10.1038/s41586-018-0256-2
Newton K, Wickliffe KE, Maltzman A, Dugger DL, Reja R, Zhang Y, et al. Activity of caspase-8 determines plasticity between cell death pathways. Nature. 2019;575:679–82.
pubmed: 31723262 doi: 10.1038/s41586-019-1752-8
Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics. 2005;21:1859–75.
pubmed: 15728110 doi: 10.1093/bioinformatics/bti310
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43:e47.
pubmed: 25605792 pmcid: 4402510 doi: 10.1093/nar/gkv007

Auteurs

Margaret Solon (M)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Nianfeng Ge (N)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Shannon Hambro (S)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Susan Haller (S)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Jian Jiang (J)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Miriam Baca (M)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Jessica Preston (J)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Allie Maltzman (A)

Department of Physiological Chemistry, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Katherine E Wickliffe (KE)

Department of Physiological Chemistry, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Yuxin Liang (Y)

Department of Microchemistry, Proteomics, Lipidomics, and Next Generation Sequencing, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Rohit Reja (R)

Department of Physiological Chemistry, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.
Department of Oncology Bioinformatics, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Dorothee Nickles (D)

Department of Oncology Bioinformatics, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.
Department of Translational Oncology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.

Kim Newton (K)

Department of Physiological Chemistry, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA. knewton@gene.com.

Joshua D Webster (JD)

Department of Pathology, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA. websterj@gene.com.

Classifications MeSH