Diffusive lensing as a mechanism of intracellular transport and compartmentalization.

agent-based modeling cytoplasmic biophysics diffusion molecular dynamics none physics of living systems space-dependent diffusivity subcellular compartmentalization

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
18 Jun 2024
Historique:
medline: 19 6 2024
pubmed: 19 6 2024
entrez: 19 6 2024
Statut: epublish

Résumé

While inhomogeneous diffusivity has been identified as a ubiquitous feature of the cellular interior, its implications for particle mobility and concentration at different length scales remain largely unexplored. In this work, we use agent-based simulations of diffusion to investigate how heterogeneous diffusivity affects the movement and concentration of diffusing particles. We propose that a nonequilibrium mode of membrane-less compartmentalization arising from the convergence of diffusive trajectories into low-diffusive sinks, which we call 'diffusive lensing,' is relevant for living systems. Our work highlights the phenomenon of diffusive lensing as a potentially key driver of mesoscale dynamics in the cytoplasm, with possible far-reaching implications for biochemical processes.

Identifiants

pubmed: 38896469
doi: 10.7554/eLife.89794
pii: 89794
doi:
pii:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIH HHS
ID : R35GM153301
Pays : United States
Organisme : National Science Foundation
ID : DGE-1656518

Informations de copyright

© 2023, Raja Venkatesh et al.

Déclaration de conflit d'intérêts

AR, KL, DW, OB No competing interests declared

Auteurs

Achuthan Raja Venkatesh (A)

Department of Biochemistry, Stanford University, Stanford, United States.
Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Mohali, India.

Kathy H Le (KH)

Department of Biochemistry, Stanford University, Stanford, United States.

David M Weld (DM)

Department of Physics, University of California, Santa Barbara, Santa Barbara, United States.

Onn Brandman (O)

Department of Biochemistry, Stanford University, Stanford, United States.

Articles similaires

Humans Meta-Analysis as Topic Sample Size Models, Statistical Computer Simulation
Adenosine Triphosphate Adenosine Diphosphate Mitochondrial ADP, ATP Translocases Binding Sites Mitochondria
Arabidopsis Arabidopsis Proteins Osmotic Pressure Cytoplasm RNA, Messenger

High-throughput Bronchus-on-a-Chip system for modeling the human bronchus.

Akina Mori, Marjolein Vermeer, Lenie J van den Broek et al.
1.00
Humans Bronchi Lab-On-A-Chip Devices Epithelial Cells Goblet Cells

Classifications MeSH