Proceedings of the EuBIC-MS developers meeting 2023.

Artificial intelligence Benchmark development Bioinformatics Computational mass spectrometry Deep learning Mass spectrometry Metabolomics Metaproteomics Predicted spectra Proteomics Spectrum clustering Visualization

Journal

Journal of proteomics
ISSN: 1876-7737
Titre abrégé: J Proteomics
Pays: Netherlands
ID NLM: 101475056

Informations de publication

Date de publication:
02 Jul 2024
Historique:
received: 26 04 2024
revised: 19 06 2024
accepted: 27 06 2024
medline: 5 7 2024
pubmed: 5 7 2024
entrez: 4 7 2024
Statut: aheadofprint

Résumé

The 2023 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers Meeting was held from January 15th to January 20th, 2023, in Congressi Stefano Franscin at Monte Verità in Ticino, Switzerland. The participants were scientists and developers working in computational mass spectrometry (MS), metabolomics, and proteomics. The 5-day program was split between introductory keynote lectures and parallel hackathon sessions focusing on "Artificial Intelligence in proteomics" to stimulate future directions in the MS-driven omics areas. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts and actively contribute to highly relevant research projects. We successfully produced several new tools applicable to the proteomics community by improving data analysis and facilitating future research.

Identifiants

DOI: 10.1016/j.jprot.2024.105246 PMID: 38964537
pubmed: 38964537
pii: S1874-3919(24)00178-7
doi: 10.1016/j.jprot.2024.105246
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

105246

Informations de copyright

Copyright © 2024. Published by Elsevier B.V.

Auteurs

Pedro Beltrao (P)

Department of Biology, ETH, Zurich, Switzerland.

Tim Van Den Bossch (T)

VIB-UGent Center for Medical Biotechnology, 9052 Zwijnaarde, Belgium; Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium.

Ralf Gabriels (R)

VIB-UGent Center for Medical Biotechnology, 9052 Zwijnaarde, Belgium; Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium.

Tanja Holstein (T)

VIB-UGent Center for Medical Biotechnology, 9052 Zwijnaarde, Belgium; Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium.

Tobias Kockmann (T)

Functional Genomics Center Zürich, ETH Zurich/University of Zurich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland.

Alireza Nameni (A)

VIB-UGent Center for Medical Biotechnology, 9052 Zwijnaarde, Belgium; Department of Biomolecular Medicine, Ghent University, 9000 Ghent, Belgium.

Christian Panse (C)

Functional Genomics Center Zürich, ETH Zurich/University of Zurich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland; Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipole, 1015 Lausanne, Switzerland. Electronic address: cp@fgcz.ethz.ch.

Ralph Schlapbach (R)

Functional Genomics Center Zürich, ETH Zurich/University of Zurich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland.

Ludwig Lautenbacher (L)

Computational Mass Spectrometry, TUM School of Life Sciences, Technical University of Munich, Maximus-von-Imhof-Forum 3, D - 85354 Freising, Germany.

Matthias Mattanovich (M)

Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark.

Alexey Nesvizhskii (A)

Departments of Pathology and Computational Medicine and Bioinfoirmatics, University of Michigan, Ann Arbor, MI 48105, USA.

Bart Van Puyvelde (B)

ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ottergemsesteenweg 460, BE-9000 Ghent, Belgium.

Jonas Scheid (J)

Department of Peptide-based Immunotherapy, Institute of Immunology, University and University hospital Tübingen, Auf der Morgenstelle 15, D-72076 Tübingen, Germany; Quantitative Biology Center (QBiC), University of Tübingen, Auf der Morgenstelle 10, D-72076 Tübingen, Germany.

Veit Schwämmle (V)

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark.

Maximilian Strauss (M)

Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

Anna Klimovskaia Susmelj (AK)

Biognosys, Schlieren, Zurich 8952, Switzerland; Now AI Center ETH, Zürich, Switzerland.

Matthew The (M)

TUM School of Life Sciences Technische Universität München, D - 85354 Freising, Germany.

Henry Webel (H)

Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

Mathias Wilhelm (M)

Computational Mass Spectrometry, TUM School of Life Sciences, Technical University of Munich, Maximus-von-Imhof-Forum 3, D - 85354 Freising, Germany.

Dirk Winkelhardt (D)

Ruhr-Universität Bochum, Germany.

Witold E Wolski (WE)

Functional Genomics Center Zürich, ETH Zurich/University of Zurich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland; Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipole, 1015 Lausanne, Switzerland.

Muyao Xi (M)

Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark.

Classifications MeSH