Matthew The

Affiliations

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany. Electronic address: matthew.the@tum.de.

Publications (14)

SIMSI-Transfer: Software-Assisted Reduction of Missing Values in Phosphoproteomic and Proteomic Isobaric Labeling Data Using Tandem Mass Spectrum Clustering.

Molecular & cellular proteomics : MCP

Avec: Firas Hamood , Florian P Bayer , Mathias Wilhelm , Bernhard Kuster , Matthew The

Prosit-TMT: Deep Learning Boosts Identification of TMT-Labeled Peptides.

Analytical chemistry

Avec: Wassim Gabriel , Matthew The , Daniel P Zolg , Florian P Bayer , Omar Shouman , Ludwig Lautenbacher , Karsten Schnatbaum , Johannes Zerweck , Tobias Knaute , Bernard Delanghe , Andreas Huhmer , Holger Wenschuh , Ulf Reimer , Guillaume Médard , Bernhard Kuster , Mathias Wilhelm

Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit.

Proteomics

Avec: Mario Picciani , Wassim Gabriel , Victor-George Giurcoiu , Omar Shouman , Firas Hamood , Ludwig Lautenbacher , Cecilia Bang Jensen , Julian Müller , Mostafa Kalhor , Armin Soleymaniniya , Bernhard Kuster , Matthew The , Mathias Wilhelm

Deep Learning-Assisted Analysis of Immunopeptidomics Data.

Methods in molecular biology (Clifton, N.J.)

Avec: Wassim Gabriel , Mario Picciani , Matthew The , Mathias Wilhelm

Decrypting lysine deacetylase inhibitor action and protein modifications by dose-resolved proteomics.

Cell reports

Avec: Yun-Chien Chang , Christian Gnann , Raphael R Steimbach , Florian P Bayer , Severin Lechner , Amirhossein Sakhteman , Miriam Abele , Jana Zecha , Jakob Trendel , Matthew The , Emma Lundberg , Aubry K Miller , Bernhard Kuster

Integrated Identification and Quantification Error Probabilities for Shotgun Proteomics.

Molecular & cellular proteomics : MCP

Avec: Matthew The , Lukas Käll

Triqler for MaxQuant: Enhancing Results from MaxQuant by Bayesian Error Propagation and Integration.

Journal of proteome research

Avec: Matthew The , Lukas Käll

Illuminating phenotypic drug responses of sarcoma cells to kinase inhibitors by phosphoproteomics.

Molecular systems biology

Avec: Chien-Yun Lee , Matthew The , Chen Meng , Florian P Bayer , Kerstin Putzker , Julian Müller , Johanna Streubel , Julia Woortman , Amirhossein Sakhteman , Moritz Resch , Annika Schneider , Stephanie Wilhelm , Bernhard Kuster

Proceedings of the EuBIC-MS developers meeting 2023.

Journal of proteomics

Avec: Pedro Beltrao , Tim Van Den Bossch , Ralf Gabriels , Tanja Holstein , Tobias Kockmann , Alireza Nameni , Christian Panse , Ralph Schlapbach , Ludwig Lautenbacher , Matthias Mattanovich , Alexey Nesvizhskii , Bart Van Puyvelde , Jonas Scheid , Veit Schwämmle , Maximilian Strauss , Anna Klimovskaia Susmelj , Matthew The , Henry Webel , Mathias Wilhelm , Dirk Winkelhardt , Witold E Wolski , Muyao Xi

Focus on the spectra that matter by clustering of quantification data in shotgun proteomics.

Nature communications

Avec: Matthew The , Lukas Käll

Speeding Up Percolator.

Journal of proteome research

Avec: John T Halloran , Hantian Zhang , Kaan Kara , Cédric Renggli , Matthew The , Ce Zhang , David M Rocke , Lukas Käll , William Stafford Noble

A region-resolved proteomic map of the human brain enabled by high-throughput proteomics.

The EMBO journal

Avec: Johanna Tüshaus , Amirhossein Sakhteman , Severin Lechner , Matthew The , Eike Mucha , Christoph Krisp , Jürgen Schlegel , Claire Delbridge , Bernhard Kuster

CurveCurator: a recalibrated F-statistic to assess, classify, and explore significance of dose-response curves.

Nature communications

Avec: Florian P Bayer , Manuel Gander , Bernhard Kuster , Matthew The

Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups.

Molecular & cellular proteomics : MCP

Avec: Matthew The , Patroklos Samaras , Bernhard Kuster , Mathias Wilhelm

Réseau de co-auteurs

Bernhard Kuster 8 collaborations

Mathias Wilhelm 6 collaborations

Florian P Bayer 5 collaborations

Lukas Käll 4 collaborations

Wassim Gabriel 3 collaborations

Ludwig Lautenbacher 3 collaborations

Amirhossein Sakhteman 3 collaborations

Firas Hamood 2 collaborations

Omar Shouman 2 collaborations

Mario Picciani 2 collaborations

Julian Müller 2 collaborations

Severin Lechner 2 collaborations

Daniel P Zolg 1 collaboration

Karsten Schnatbaum 1 collaboration

Johannes Zerweck 1 collaboration

Tobias Knaute 1 collaboration

Bernard Delanghe 1 collaboration

Andreas Huhmer 1 collaboration

Holger Wenschuh 1 collaboration

Ulf Reimer 1 collaboration

Guillaume Médard 1 collaboration

Victor-George Giurcoiu 1 collaboration

Cecilia Bang Jensen 1 collaboration

Mostafa Kalhor 1 collaboration

Armin Soleymaniniya 1 collaboration

Yun-Chien Chang 1 collaboration

Christian Gnann 1 collaboration

Raphael R Steimbach 1 collaboration

Miriam Abele 1 collaboration

Jana Zecha 1 collaboration

Jakob Trendel 1 collaboration

Emma Lundberg 1 collaboration

Aubry K Miller 1 collaboration

Chien-Yun Lee 1 collaboration

Chen Meng 1 collaboration

Kerstin Putzker 1 collaboration

Johanna Streubel 1 collaboration

Julia Woortman 1 collaboration

Moritz Resch 1 collaboration

Annika Schneider 1 collaboration

Stephanie Wilhelm 1 collaboration

Pedro Beltrao 1 collaboration

Tim Van Den Bossch 1 collaboration

Ralf Gabriels 1 collaboration

Tanja Holstein 1 collaboration

Tobias Kockmann 1 collaboration

Alireza Nameni 1 collaboration

Christian Panse 1 collaboration

Ralph Schlapbach 1 collaboration

Matthias Mattanovich 1 collaboration

Alexey Nesvizhskii 1 collaboration

Bart Van Puyvelde 1 collaboration

Jonas Scheid 1 collaboration

Veit Schwämmle 1 collaboration

Maximilian Strauss 1 collaboration

Anna Klimovskaia Susmelj 1 collaboration

Henry Webel 1 collaboration

Dirk Winkelhardt 1 collaboration

Witold E Wolski 1 collaboration

Muyao Xi 1 collaboration

John T Halloran 1 collaboration

Hantian Zhang 1 collaboration

Kaan Kara 1 collaboration

Cédric Renggli 1 collaboration

Ce Zhang 1 collaboration

David M Rocke 1 collaboration

William Stafford Noble 1 collaboration

Johanna Tüshaus 1 collaboration

Eike Mucha 1 collaboration

Christoph Krisp 1 collaboration

Jürgen Schlegel 1 collaboration

Claire Delbridge 1 collaboration

Manuel Gander 1 collaboration

Patroklos Samaras 1 collaboration