Secondary structure determines electron transport in peptides.
biological electron transport
molecular dynamics simulations
peptide secondary structure
quantum mechanical calculations
single-molecule charge transport
Journal
Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876
Informations de publication
Date de publication:
06 Aug 2024
06 Aug 2024
Historique:
medline:
26
7
2024
pubmed:
26
7
2024
entrez:
25
7
2024
Statut:
ppublish
Résumé
Proteins play a key role in biological electron transport, but the structure-function relationships governing the electronic properties of peptides are not fully understood. Despite recent progress, understanding the link between peptide conformational flexibility, hierarchical structures, and electron transport pathways has been challenging. Here, we use single-molecule experiments, molecular dynamics (MD) simulations, nonequilibrium Green's function-density functional theory (NEGF-DFT), and unsupervised machine learning to understand the role of secondary structure on electron transport in peptides. Our results reveal a two-state molecular conductance behavior for peptides across several different amino acid sequences. MD simulations and Gaussian mixture modeling are used to show that this two-state molecular conductance behavior arises due to the conformational flexibility of peptide backbones, with a high-conductance state arising due to a more defined secondary structure (beta turn or 3
Identifiants
pubmed: 39052850
doi: 10.1073/pnas.2403324121
doi:
Substances chimiques
Peptides
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e2403324121Subventions
Organisme : DOE | Office of Science (SC)
ID : DE-SC0022035
Organisme : DOD | USA | AFC | CCDC | Army Research Office (ARO)
ID : W911NF-22-2-0246
Déclaration de conflit d'intérêts
Competing interests statement:The authors declare no competing interest.