Secondary structure determines electron transport in peptides.

biological electron transport molecular dynamics simulations peptide secondary structure quantum mechanical calculations single-molecule charge transport

Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
06 Aug 2024
Historique:
medline: 26 7 2024
pubmed: 26 7 2024
entrez: 25 7 2024
Statut: ppublish

Résumé

Proteins play a key role in biological electron transport, but the structure-function relationships governing the electronic properties of peptides are not fully understood. Despite recent progress, understanding the link between peptide conformational flexibility, hierarchical structures, and electron transport pathways has been challenging. Here, we use single-molecule experiments, molecular dynamics (MD) simulations, nonequilibrium Green's function-density functional theory (NEGF-DFT), and unsupervised machine learning to understand the role of secondary structure on electron transport in peptides. Our results reveal a two-state molecular conductance behavior for peptides across several different amino acid sequences. MD simulations and Gaussian mixture modeling are used to show that this two-state molecular conductance behavior arises due to the conformational flexibility of peptide backbones, with a high-conductance state arising due to a more defined secondary structure (beta turn or 3

Identifiants

pubmed: 39052850
doi: 10.1073/pnas.2403324121
doi:

Substances chimiques

Peptides 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e2403324121

Subventions

Organisme : DOE | Office of Science (SC)
ID : DE-SC0022035
Organisme : DOD | USA | AFC | CCDC | Army Research Office (ARO)
ID : W911NF-22-2-0246

Déclaration de conflit d'intérêts

Competing interests statement:The authors declare no competing interest.

Auteurs

Rajarshi Samajdar (R)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Moeen Meigooni (M)

Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Hao Yang (H)

Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Jialing Li (J)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Xiaolin Liu (X)

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Nicholas E Jackson (NE)

Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Martín A Mosquera (MA)

Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717.

Emad Tajkhorshid (E)

Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

Charles M Schroeder (CM)

Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801.

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Classifications MeSH