Combination therapy synergism prediction for virus treatment using machine learning models.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2024
Historique:
received: 02 06 2024
accepted: 16 08 2024
medline: 4 9 2024
pubmed: 4 9 2024
entrez: 4 9 2024
Statut: epublish

Résumé

Combining different drugs synergistically is an essential aspect of developing effective treatments. Although there is a plethora of research on computational prediction for new combination therapies, there is limited to no research on combination therapies in the treatment of viral diseases. This paper proposes AI-based models for predicting novel antiviral combinations to treat virus diseases synergistically. To do this, we assembled a comprehensive dataset comprising information on viral strains, drug compounds, and their known interactions. As far as we know, this is the first dataset and learning model on combination therapy for viruses. Our proposal includes using a random forest model, an SVM model, and a deep model to train viral combination therapy. The machine learning models showed the highest performance, and the predicted values were validated by a t-test, indicating the effectiveness of the proposed methods. One of the predicted combinations of acyclovir and ribavirin has been experimentally confirmed to have a synergistic antiviral effect against herpes simplex type-1 virus, as described in the literature.

Identifiants

pubmed: 39231124
doi: 10.1371/journal.pone.0309733
pii: PONE-D-24-22310
doi:

Substances chimiques

Antiviral Agents 0
Ribavirin 49717AWG6K
Acyclovir X4HES1O11F

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0309733

Informations de copyright

Copyright: © 2024 Majidifar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Auteurs

Shayan Majidifar (S)

Department of Computer Science and Information Technology, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, Iran.

Arash Zabihian (A)

Department of QA, Kimia Zist Parsian Pharmaceutical Company, Zanjan, Iran.

Mohsen Hooshmand (M)

Department of Computer Science and Information Technology, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, Iran.

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Classifications MeSH