Regulatory genome annotation of 33 insect species.

Animals Insecta / genetics Genome, Insect / genetics Molecular Sequence Annotation Enhancer Elements, Genetic / genetics Computational Biology / methods Databases, Genetic
D. melanogaster chromosomes cis-regulation enhancer prediction enhancers gene expression genetics genome annotation genomics insects regulatory genomics

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
11 Oct 2024
Historique:
medline: 11 10 2024
pubmed: 11 10 2024
entrez: 11 10 2024
Statut: epublish

Résumé

Annotation of newly sequenced genomes frequently includes genes, but rarely covers important non-coding genomic features such as the

Identifiants

DOI: 10.7554/eLife.96738 PMID: 39392676
pubmed: 39392676
doi: 10.7554/eLife.96738
pii: 96738
doi:
pii:

Banques de données

Dryad
['10.5061/dryad.3j9kd51t0']
GEO
['GSE101827', 'GSE38727', 'GSE118240', 'GSE104495', 'GSE152924']

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : National Science Foundation
ID : IOS-1557936
Organisme : NIH HHS
ID : U24 GM142435
Pays : United States
Organisme : National Institute of Food and Agriculture
ID : 2019-67013-29354
Organisme : Miami University
ID : Faculty Research Grants Program

Informations de copyright

© 2024, Asma et al.

Déclaration de conflit d'intérêts

HA, ET, KD, JR, TD, XH, YT, MH No competing interests declared

Auteurs

Hasiba Asma (H)

Program in Genetics, Genomics, and Bioinformatics, University at Buffalo-State University of New York, Buffalo, United States.
ORCID: 0000-0002-9304-2685

Ellen Tieke (E)

Department of Biology, Miami University, Oxford, United States.

Kevin D Deem (KD)

Department of Biology, Miami University, Oxford, United States.

Jabale Rahmat (J)

Department of Biology, Miami University, Oxford, United States.

Tiffany Dong (T)

Department of Biochemistry, University at Buffalo-State University of New York, Buffalo, United States.

Xinbo Huang (X)

Department of Biochemistry, University at Buffalo-State University of New York, Buffalo, United States.

Yoshinori Tomoyasu (Y)

Department of Biology, Miami University, Oxford, United States.
ORCID: 0000-0001-9824-3454

Marc S Halfon (MS)

Program in Genetics, Genomics, and Bioinformatics, University at Buffalo-State University of New York, Buffalo, United States.
Department of Biochemistry, University at Buffalo-State University of New York, Buffalo, United States.
Department of Biomedical Informatics, University at Buffalo-State University of New York, Buffalo, United States.
Department of Biological Sciences, University at Buffalo-State University of New York, Buffalo, United States.
ORCID: 0000-0002-4149-2705

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Regulatory genome annotation of 33 insect species.
questionsmedicales.fr › Eucaryotes › Animaux › Invertébrés › Arthropodes › Insectes › Regulatory genome annotation of 33 insect species.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome d'insecte › Regulatory genome annotation of 33 insect species.
questionsmedicales.fr › Sciences de l'information › Sources d'information › Services d'information › Documentation › Données de séquences moléculaires › Annotation de séquence moléculaire › Regulatory genome annotation of 33 insect species.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Composants de gène › Éléments de régulation transcriptionnelle › Éléments activateurs (génétique) › Regulatory genome annotation of 33 insect species.
questionsmedicales.fr › Sciences de l'information › Informatique › Biologie informatique › Regulatory genome annotation of 33 insect species.
questionsmedicales.fr › Sciences de l'information › Mémorisation et recherche des informations › Bases de données comme sujet › Bases de données factuelles › Bases de données génétiques › Regulatory genome annotation of 33 insect species.