Genetic dissection of Meloidogyne incognita resistance genes based on VIGS functional analysis in Cucumis metuliferus.
Cucumis metuliferus
Meloidogyne incognita
Bin map
QTL
VIGS
Journal
BMC plant biology
ISSN: 1471-2229
Titre abrégé: BMC Plant Biol
Pays: England
ID NLM: 100967807
Informations de publication
Date de publication:
15 Oct 2024
15 Oct 2024
Historique:
received:
16
02
2024
accepted:
08
10
2024
medline:
15
10
2024
pubmed:
15
10
2024
entrez:
14
10
2024
Statut:
epublish
Résumé
The southern root-knot nematode, Meloidogyne incognita, is a highly serious plant parasitic nematode species that causes significant economic losses in various crops, including cucumber (Cucumis sativus L.). Currently, there are no commercial cultivars available with resistance to M. incognita in cucumber. However, the African horned melon (Cucumis metuliferus Naud.), a semi-wild relative of cucumber, has shown high resistance to M. incognita. In this study, we constructed an ultrahigh-density genetic linkage bin-map using low-coverage sequences from an F
Identifiants
pubmed: 39402446
doi: 10.1186/s12870-024-05681-6
pii: 10.1186/s12870-024-05681-6
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
964Subventions
Organisme : the National Natural Science Foundation of China
ID : 32372508
Organisme : the National Natural Science Foundation of China
ID : 31571996
Organisme : National Key Research and Development Program of China
ID : 2023YFD1400400
Organisme : National Agriculture Science and Technology Major Program
ID : NK20220904
Informations de copyright
© 2024. The Author(s).
Références
Shrestha J, Thapa B, Subedi S. Root-knot nematode (Meloidogyne incognita) and its management: a review. J Agric Nat Resour. 2020;3(2):21–31.
doi: 10.3126/janr.v3i2.32298
Desaeger J, Wram C, Zasada I. New reduced-risk agricultural nematicides - rationale and review. J Nematol 2020, 52.
Zasada IA, Halbrendt JM, Kokalis-Burelle N, LaMondia J, McKenry MV, Noling JW. Managing nematodes without methyl bromide. Annu Rev Phytopathol. 2010;48:311–28.
doi: 10.1146/annurev-phyto-073009-114425
pubmed: 20455696
Fassuliotis G. Resistance of Cucumis spp. to the root-knot nematode, Meloidogyne incognita acrita. J Nematology. 1970;2(2):174.
Kayani MZ, Mukhtar T, Growth and yield responses of fifteen cucumber cultivars to root-knot nematode. (Meloidogyne incognita). Acta Scientiarum Polonorum Hortorum Cultus. 2019;18(3):45–52.
Kayani MZ, Mukhtar T, Hussain MA. Effects of southern root knot nematode population densities and plant age on growth and yield parameters of cucumber. Crop Prot. 2017;92:207–12.
doi: 10.1016/j.cropro.2016.09.007
Mukhtar T, Kayani MZ, Hussain MA. Response of selected cucumber cultivars to Meloidogyne incognita. Crop Prot. 2013;44:13–7.
doi: 10.1016/j.cropro.2012.10.015
Walters SA. TC Wehner Incompatibility in diploid and tetraploid crosses of Cucumis sativus and Cucumis metuliferus. Euphytica 2002;128:371–4.
Walters SA, Wehner TC, Barkel KR. Root-knot nematode resistance in cucumber and horned cucumber. HortScience. 1993;28(2):151–4.
doi: 10.21273/HORTSCI.28.2.151
Wehner TC, Walters SA, Barker KR. Resistance to root-knot nematodes in cucumber and horned cucumber. J Nematology. 1991;23(4S):611.
Ling J, Xie X, Gu X, Zhao J, Ping X, Li Y, Yang Y, Mao Z, Xie B. High-quality chromosome-level genomes of Cucumis metuliferus and Cucumis melo provide insight into Cucumis genome evolution. Plant J. 2021;107(1):136–48.
doi: 10.1111/tpj.15279
pubmed: 33866620
Benzioni A, Mendlinger S, Ventura M, Huyskens S. Effect of sowing dates, temperatures on Germination, Flowering, and yield of Cucumis metuliferus. HortScience HortSci. 1991;26(8):1051–3.
doi: 10.21273/HORTSCI.26.8.1051
Weng Y. Genetic diversity among Cucumis metuliferus populations revealed by Cucumber microsatellites. HortScience Horts. 2010;45(2):214–9.
doi: 10.21273/HORTSCI.45.2.214
Dalmasso A, de Vaulx RD, Pitrat M. Response of some Cucurbita and Cucumis accessions to three Meloidogyne species. Cucurbit Genet Coop 1981:27.
Nugent PE, Dukes P. Root-knot nematode resistance in Cucumis species. HortScience. 1997;32(5):880–1.
doi: 10.21273/HORTSCI.32.5.880
Walters SA, Wehner TC, Daykin ME, Barker KR. Penetration rates of root-knot nematodes into Cucumis sativus and C. Metuliferus roots and subsequent histological changes. Nematropica. 2006;36(2):231–42.
Ye DY, Qi YH, Cao SF, Wei BQ, Zhang HS. Histopathology combined with transcriptome analyses reveals the mechanism of resistance to Meloidogyne incognita in Cucumis metuliferus. J Plant Physiol. 2017;212:115–24.
doi: 10.1016/j.jplph.2017.02.002
pubmed: 28314173
Ling J, Mao Z, Zhai M, Zeng F, Yang Y, Xie B. Transcriptome profiling of Cucumis metuliferus infected by Meloidogyne incognita provides new insights into putative defense regulatory network in Cucurbitaceae. Sci Rep. 2017;7(1):3544.
doi: 10.1038/s41598-017-03563-6
pubmed: 28615634
pmcid: 5471208
Shao H, Fu Y, Zhang P, You C, Li C, Peng H. Transcriptome analysis of resistant and susceptible mulberry responses to Meloidogyne enterolobii infection. BMC Plant Biol. 2021;21(1):338.
doi: 10.1186/s12870-021-03128-w
pubmed: 34271854
pmcid: 8285880
Fassuliotis G. Plant resistance to root-knot nematodes. Nematology South Region United States Ark Agricultural Exp Stn Fayettev AR USA. 1982;Southern Cooperative Series Bulletin, 276:31–49.
Tunnermann L, Colou J, Nasholm T, Gratz R. To have or not to have: expression of amino acid transporters during pathogen infection. Plant Mol Biol. 2022;109(4–5):413–25.
doi: 10.1007/s11103-022-01244-1
pubmed: 35103913
pmcid: 9213295
Ganeteg U, Ahmad I, Jamtgard S, Aguetoni-Cambui C, Inselsbacher E, Svennerstam H, Schmidt S, Nasholm T. Amino acid transporter mutants of Arabidopsis provides evidence that a non-mycorrhizal plant acquires organic nitrogen from agricultural soil. Plant Cell Environ. 2017;40(3):413–23.
doi: 10.1111/pce.12881
pubmed: 27943312
Svennerstam H, Jamtgard S, Ahmad I, Huss-Danell K, Nasholm T, Ganeteg U. Transporters in Arabidopsis roots mediating uptake of amino acids at naturally occurring concentrations. New Phytol. 2011;191(2):459–67.
doi: 10.1111/j.1469-8137.2011.03699.x
pubmed: 21453345
Elashry A, Okumoto S, Siddique S, Koch W, Kreil DP, Bohlmann H. The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiol Biochem. 2013;70:379–86.
doi: 10.1016/j.plaphy.2013.05.016
pubmed: 23831821
pmcid: 3737465
Hofmann J, El Ashry AEN, Anwar S, Erban A, Kopka J, Grundler F. Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism. Plant J. 2010;62(6):1058–71.
doi: 10.1111/j.1365-313X.2010.04217.x
pubmed: 20374527
pmcid: 2904900
Cook DE, Lee TG, Guo X, Melito S, Wang K, Bayless AM, Wang J, Hughes TJ, Willis DK, Clemente TE. Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean. science 2012;338(6111):1206–1209.
Sadler JE. Biochemistry and genetics of Von Willebrand factor. Annu Rev Biochem. 1998;67(1):395–424.
doi: 10.1146/annurev.biochem.67.1.395
pubmed: 9759493
Liu J, Van Eck J, Cong B, Tanksley SD. A new class of regulatory genes underlying the cause of pear-shaped tomato fruit. Proc Natl Acad Sci. 2002;99(20):13302–6.
doi: 10.1073/pnas.162485999
pubmed: 12242331
pmcid: 130628
Marella HH, Nielsen E, Schachtman DP, Taylor CG. The amino acid Permeases AAP3 and AAP6 are involved in Root-Knot Nematode Parasitism of Arabidopsis. Mol Plant-Microbe Interactions
doi: 10.1094/MPMI-05-12-0123-FI
Davide R, Triantaphyllou A. Influence of the Environment On Development and Sex differentiation of Root-Knot nematodes. Nematologica. 1967;13(1):111–7.
doi: 10.1163/187529267X00995
Snyder DW, Opperman CH, Bird DM. A method for generating Meloidogyne incognita males. J Nematology. 2006;38(2):192.
Eisenback J. Detailed morphology and anatomy of second-stage juveniles, males, and females of the genus Meloidogyne (root-knot nematodes). Adv Treatise Meloidogyne. 1985;1:47–77.
Moura R, Davis E, Luzzi B, Boerma H, Hussey R. Post-infectional development of Meloidogyne incognita on susceptible and resistant soybean genotypes. Nematropica 1993:7–13.
Faske T. Penetration, post-penetration development, and reproduction of Meloidogyne incognita on Cucumis melo var. Texanus. J Nematology. 2013;45(1):58.
Xie X, Ling J, Mao Z, Li Y, Zhao J, Yang Y, Li Y, Liu M, Gu X, Xie B. Negative regulation of root-knot nematode parasitic behavior by root-derived volatiles of wild relatives of Cucumis metuliferus CM3. Hortic Res. 2022;9:uhac051.
doi: 10.1093/hr/uhac051
pubmed: 35531315
pmcid: 9071375
Zhao J, Sun Q, Quentin M, Ling J, Abad P, Zhang X, Li Y, Yang Y, Favery B, Mao Z, et al. A Meloidogyne incognita C-type lectin effector targets plant catalases to promote parasitism. New Phytol. 2021;232(5):2124–37.
doi: 10.1111/nph.17690
pubmed: 34449897
Oka Y, Offenbach R, Pivonia S. Pepper Rootstock Graft compatibility and response to Meloidogyne Javanica and M. Incognita. J Nematology. 2004;36(2):137–41.
Wang HJ, Yue WU, Wei GU, Sun XD, Qin ZW. Extraction of DNA from Cucumber by Improved CTAB Method. Heilongjiang Agricultural Sci 2006.
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754–60.
doi: 10.1093/bioinformatics/btp324
pubmed: 19451168
pmcid: 2705234
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. Genome Project Data Processing S: the sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25(16):2078–9.
doi: 10.1093/bioinformatics/btp352
pubmed: 19505943
pmcid: 2723002
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, et al. High-throughput genotyping by whole-genome resequencing. Genome Res. 2009;19(6):1068–76.
doi: 10.1101/gr.089516.108
pubmed: 19420380
pmcid: 2694477
Liu D, Ma C, Hong W, Huang L, Liu M, Liu H, Zeng H, Deng D, Xin H, Song J, et al. Construction and analysis of high-density linkage map using high-throughput sequencing data. PLoS ONE. 2014;9(6):e98855.
doi: 10.1371/journal.pone.0098855
pubmed: 24905985
pmcid: 4048240
Tang H, Zhang X, Miao C, Zhang J, Ming R, Schnable JC, Schnable PS, Lyons E, Lu J. ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biol. 2015;16(1):3.
doi: 10.1186/s13059-014-0573-1
pubmed: 25583564
pmcid: 4305236
van Ooijen JW, Boer MP, Jansen RC, Maliepaard C. MapQTL 6.0, Software for the calculation of QTL positions on genetic maps. Plant Research International, Wageningen, The Netherlands 2009.
Livak KJ, Schmittgen T. Analysis of relative gene expression data using real-time quantitative PCR and the 2-DDCt method. Methods. 2001;25(4):402–8.
doi: 10.1006/meth.2001.1262
pubmed: 11846609
Bi X, Guo H, Li X, Zheng L, An M, Xia Z, Wu Y. A novel strategy for improving watermelon resistance to cucumber green mottle mosaic virus by exogenous boron application. Mol Plant Pathol. 2022;23(9):1361–80.
doi: 10.1111/mpp.13234
pubmed: 35671152
pmcid: 9366068
Liu M, Liang Z, Aranda MA, Hong N, Liu L, Kang B, Gu Q. A cucumber green mottle mosaic virus vector for virus-induced gene silencing in cucurbit plants. Plant Methods. 2020;16:9.
doi: 10.1186/s13007-020-0560-3
pubmed: 32025236
pmcid: 6996188
Xu J, Zhang N, Wang K, Xian Q, Dong J, Qi X, Chen X. Chitinase Chi 2 positively regulates Cucumber Resistance against Fusarium oxysporum f. sp. cucumerinum. Genes (Basel) 2021, 13(1).
Zhang Y, Wang Y, Wen W, Shi Z, Gu Q, Ahammed GJ, Cao K, Shah Jahan M, Shu S, Wang J, et al. Hydrogen peroxide mediates spermidine-induced autophagy to alleviate salt stress in cucumber. Autophagy. 2021;17(10):2876–90.
doi: 10.1080/15548627.2020.1847797
pubmed: 33172324
Zhu H, He M, Jahan MS, Wu J, Gu Q, Shu S, Sun J, Guo S. CsCDPK6, a CsSAMS1-Interacting protein, affects Polyamine/Ethylene Biosynthesis in Cucumber and enhances salt tolerance by overexpression in Tobacco. Int J Mol Sci 2021, 22(20).