Metagenome-based microbial community analysis of urine-derived fertilizer.
Bacilliota
Antimicrobial resistant genes
Bacterial diversity
Struvite
Journal
BMC microbiology
ISSN: 1471-2180
Titre abrégé: BMC Microbiol
Pays: England
ID NLM: 100966981
Informations de publication
Date de publication:
19 Oct 2024
19 Oct 2024
Historique:
received:
25
01
2024
accepted:
10
10
2024
medline:
19
10
2024
pubmed:
19
10
2024
entrez:
18
10
2024
Statut:
epublish
Résumé
Phosphorus is essential for food production and its supply is limited. Urine is an excellent source of phosphorus and one way to produce fertilizer is through conversion of urine to struvite (MgNH
Identifiants
pubmed: 39425038
doi: 10.1186/s12866-024-03578-w
pii: 10.1186/s12866-024-03578-w
doi:
Substances chimiques
Fertilizers
0
Struvite
AW3EJL1462
DNA, Bacterial
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
418Informations de copyright
© 2024. The Author(s).
Références
Ackerman AL, Chai TC. The bladder is not sterile: an update on the urinary microbiome. Curr Bladder Dysfunct Rep. 2019;14:331–41.
doi: 10.1007/s11884-019-00543-6
pubmed: 32612735
pmcid: 7328282
Ahmed W, Hamilton KA, Vieritz A, Powell D, Goonetilleke A, Hamilton MT, Gardner T. Microbial risk from source-separated urine used as liquid fertilizer in sub-tropical Australia. Microb Risk Anal. 2017;5:53–64.
Bischel HN, Özel Duygan BD, Strande L, McArdell CS, Udert KM, Kohn T. Pathogens and pharmaceuticals in source-separated urine in eThekwini, South Africa. Water Res. 2015;85:57–65.
doi: 10.1016/j.watres.2015.08.022
pubmed: 26302215
Black Z, Balta I, Black L, Naughton PJ, Dooley JSG, Corcionivoschi N. The fate of foodborne pathogens in manure treated soil. Front Microbiol. 2021;12:781357.
doi: 10.3389/fmicb.2021.781357
pubmed: 34956145
pmcid: 8702830
Cao X, Hao G, Li Y, Wang M, Wang J. On male urination and related environmental disease transmission in restrooms: from the perspectives of fluid dynamics. Sustain Cities Soc. 2022;80:103753.
doi: 10.1016/j.scs.2022.103753
pubmed: 35136716
pmcid: 8812150
Fricke WF, Maddox C, Song Y, Bromberg JS. Human microbiota characterization in the course of renal transplantation. Am J Transpl. 2014;14:416–27.
doi: 10.1111/ajt.12588
Geissler M, Isabel S, Voisin B, Fauvel C, Boissinot M, Bergeron MG, Veres T. Modular ultrasonic lysis system for rapid nucleic acid extraction and sample transfer of Bacillus spores. J Bioterr Biodef. 2012;03:119.
doi: 10.4172/2157-2526.1000119
Goetsch HE, Love NG, Wigginton KR. Fate of Extracellular DNA in the Production of Fertilizers from Source-Separated Urine. Environ Sci Technol. 2020;54(3):1808–15. https://doi.org/10.1021/acs.est.9b04263 . Epub 2020 Jan 22.
Halinski A, Bhatti KH, Boeri L, Cloutier J, Davidoff K, Elqady A, Fryad G, Gadelmoula M, Hui H, Petkova K, Popov E, Rawa B, Saltirov I, Spivacow FR, Hameed BMZ, Arkusz K, Trinchieri A, Buchholz N. Spectrum of bacterial pathogens from urinary infections associated with struvite and metabolic stones. Diagnostics. 2023;13:80. https://doi.org/10.3390/diagnostics13010080 .
doi: 10.3390/diagnostics13010080
Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM. Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples. J Clin Microbiol 2014;52. https://doi.org/10.1128/jcm.02452-13 .
Hilt EE, McKinley K, Pearce MM, Rosenfeld AB, Zilliox MJ, Mueller ER, Brubaker L, Gai X, Wolfe AJ, Schreckenberger PC. Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder. J Clin Microbiol. 2014;52:871–6.
doi: 10.1128/JCM.02876-13
pubmed: 24371246
pmcid: 3957746
Jung CE, Chopyk J, Shin JH, Lukacz ES, Brubaker L, Schwanemann LK, Knight R, Wolfe AJ, Pride DT. Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. Sci Rep. 2019;9:13409.
Lahr HR, Goetsch EH, Haig JS, Noe-Hays A, Love GN, Aga SD, Bott BC, Foxman B, Jimenez J, Luo T, Nace K, Ramadugu K, Wigginton RK. Urine bacterial community convergence through fertilizer production: storage, pasteurization and struvite precipitation. Environ Sci Technol. 2016;50:11619–26.
doi: 10.1021/acs.est.6b02094
pubmed: 27690126
Lewis DA, Brown R, Williams J, White P, Jacobson SK, Marchesi JR, Drake MJ. The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults. Front Cell Infect Microbiol. 2013;3:41. https://doi.org/10.3389/fcimb.2013.00041 .
doi: 10.3389/fcimb.2013.00041
pubmed: 23967406
pmcid: 3744036
Luo Y, Li H, Huang YR, Zhao TL, Yao QZ, Fu SQ, Zhou GT. Bacterial mineralization of struvite using MgO as magnesium source and its potential for nutrient recovery. Chem Eng J. 2018;351:195–202.
doi: 10.1016/j.cej.2018.06.106
Marti R, Scott A, Tien Y, Murray R, Sabourin L, Zhang Y, Topp E. Impact of manure fertilization on the abundance of antibiotic-resistant bacteria and frequency of detection of antibiotic resistance genes in soil and on vegetables at harvest. App Env Microbiol. 2013;79:5701–9.
doi: 10.1128/AEM.01682-13
Moustafa A, Li W, Singh H, Moncera KJ, Torralba MG, Yu Y, Manuel O, Biggs W, Venter JC, Nelson KE, Pieper R, Telenti A. Microbial metagenome of urinary tract infection. Sci Rep. 2018;8:4333.
doi: 10.1038/s41598-018-22660-8
pubmed: 29531289
pmcid: 5847550
Nelson DE, Van Der Pol B, Dong Q, Revanna KV, Fan B, et al. Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection. PLoS ONE. 2010;5:e14116. https://doi.org/10.1371/journal.pone.0014116 .
doi: 10.1371/journal.pone.0014116
pubmed: 21124791
pmcid: 2991352
Pearce MM, Hilt EE, Rosenfeld AB, Zilliox MJ, White KT, Fok C, Stephanie K, Schreckenberger PC, Brubaker L, Gai X, Wolfe AJ. The female urinary microbiome: a comparison of women with and without urgency urinary incontinence. mBio. 2014;5:e01283–14. https://doi.org/10.1128/mBio.01283-14 .
doi: 10.1128/mBio.01283-14
pubmed: 25006228
pmcid: 4161260
Perez-Carrasco V, Soriano-Lerma A, Soriano M, Gutie´rrez-Ferna´ndez J, Garcia-Salcedo JA. Urinary microbiome: yin and yang of the urinary tract. Front Cell Infect Microbiol. 2021;11:617002. https://doi.org/10.3389/fcimb.2021.617002 .
doi: 10.3389/fcimb.2021.617002
pubmed: 34084752
pmcid: 8167034
Qiu Y, Zhou Y, Chang Y, Liang X, Zhang H, Lin X, Qing K, Zhou X, Luo Z. The effects of ventilation, humidity, and temperature on bacterial growth and bacterial genera distribution. Int J Environ Res Public Hlth. 2022;19:15345.
doi: 10.3390/ijerph192215345
Salvatore SR, Vitturi DA, Baker PRS, Bonacci G, Koenitzer JR, Woodcock SR, Freeman BA, Schopfer FJ. Characterization and quantification of endogenous fatty acid nitroalkene metabolites in human urine. J Lipid Res. 2013;54:1998–2009. https://doi.org/10.1194/jlr.M037804 .
doi: 10.1194/jlr.M037804
pubmed: 23620137
pmcid: 3679401
Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS. Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiol. 2011;11:244. https://doi.org/10.1186/1471-2180-11-244 .
doi: 10.1186/1471-2180-11-244
pubmed: 22047020
pmcid: 3228714
Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS. Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiol. 2012;12:205. https://doi.org/10.1186/1471-2180-12-205 . PMID: 22974186; PMCID: PMC3538702.
doi: 10.1186/1471-2180-12-205
pubmed: 22974186
pmcid: 3538702
Sun Y, Snow D, Walia H, Li X. Transmission routes of the microbiome and resistome from manure to soil and lettuce. Environ Sci Technol. 2021;55:11102–12.
doi: 10.1021/acs.est.1c02985
Tsai YL, Olson BH. Rapid Method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl Environ Microbiol. 1992;58:2292–5.
doi: 10.1128/aem.58.7.2292-2295.1992
pubmed: 1386212
pmcid: 195770
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature. 2007;449(7164):804–10. https://doi.org/10.1038/nature06244 . PMID: 17943116; PMCID: PMC3709439.
doi: 10.1038/nature06244
pubmed: 17943116
pmcid: 3709439
Wetzel D, McBride SM. The impact of pH on Clostridioides difficile sporulation and physiology. App Environ Microbiol. 2020;86. e02706-19. PMID: 31811041; PMCID: PMC6997743.
doi: 10.1128/AEM.02706-19
Woldeyohannis NN, Desta AF. Fate of antimicrobial resistance genes (ARG) and ARG carriers in struvite production process from human urine. J Environ Sci Health Part A. 2023;58:783–92.
doi: 10.1080/10934529.2023.2235246
Xu K, Lu J, Hu L, Li J, Cheng S, Zheng M, Wang C. Pathogens inactivation in nutrient recovery from urine: a review. Front Environ Sci. 2022;10. https://doi.org/10.3389/fenvs.2022.1056019 .
Zhang Y, Hu H, Chen Q, Singh B, Yan H, Chen D, He J. Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes. Env Int. 2019;130:104912, 1–10.
doi: 10.1016/j.envint.2018.12.035
Zhou S, Zhu D, Giles M, Yang X, Daniell T, Neilson R, Zhu Y. Phyllosphere of staple crops under pig manure fertilization, a reservoir of antibiotic resistance genes. Env Pollution. 2019;252:227–35.
doi: 10.1016/j.envpol.2019.05.098
Zuber A, Peric A, Pluchino N, Baud D, Stojanov M. Human male genital tract microbiota. Int J Mol Sci. 2023;24:6939.
doi: 10.3390/ijms24086939
pubmed: 37108103
pmcid: 10139050