Association of common and rare variants with Alzheimer's disease in more than 13,000 diverse individuals with whole-genome sequencing from the Alzheimer's Disease Sequencing Project.

Alzheimer's disease genetics rare genetic variants whole genome sequencing

Journal

Alzheimer's & dementia : the journal of the Alzheimer's Association
ISSN: 1552-5279
Titre abrégé: Alzheimers Dement
Pays: United States
ID NLM: 101231978

Informations de publication

Date de publication:
20 Oct 2024
Historique:
revised: 08 08 2024
received: 28 05 2024
accepted: 05 09 2024
medline: 21 10 2024
pubmed: 21 10 2024
entrez: 21 10 2024
Statut: aheadofprint

Résumé

Alzheimer's disease (AD) is a common disorder of the elderly that is both highly heritable and genetically heterogeneous. We investigated the association of AD with both common variants and aggregates of rare coding and non-coding variants in 13,371 individuals of diverse ancestry with whole genome sequencing (WGS) data. Pooled-population analyses of all individuals identified genetic variants at apolipoprotein E (APOE) and BIN1 associated with AD (p < 5 × 10 We observed that complementary pooled-population and subgroup-specific analyses offered unique insights into the genetic architecture of AD. We determine the association of genetic variants with Alzheimer's disease (AD) using 13,371 individuals of diverse ancestry with whole genome sequencing (WGS) data. We identified genetic variants at apolipoprotein E (APOE), BIN1, PSEN1, and LINC00320 associated with AD. We observed rare non-coding variants in the promoter of TOMM40 distinct of APOE.

Identifiants

pubmed: 39428839
doi: 10.1002/alz.14283
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIA NIH HHS
Pays : United States

Informations de copyright

© 2024 The Author(s). Alzheimer's & Dementia published by Wiley Periodicals LLC on behalf of Alzheimer's Association.

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Auteurs

Wan-Ping Lee (WP)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Seung Hoan Choi (SH)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.

Margaret G Shea (MG)

Biostatistics and Epidemiology Data Analytics Center, Boston University School of Public Health, Boston, Massachusetts, USA.

Po-Liang Cheng (PL)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Beth A Dombroski (BA)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Achilleas N Pitsillides (AN)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.

Nancy L Heard-Costa (NL)

Department of Neurology, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA.
Framingham Heart Study, Framingham, Massachusetts, USA.

Hui Wang (H)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Katia Bulekova (K)

Research Computing Services, Information Services & Technology, Boston University, Boston, Massachusetts, USA.

Amanda B Kuzma (AB)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Yuk Yee Leung (YY)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

John J Farrell (JJ)

Biomedical Genetics, Department of Medicine, Boston University Medical School, Boston, Massachusetts, USA.

Honghuang Lin (H)

Department of Medicine, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA.

Brian W Kunkle (BW)

John P. Hussman Institute for Human Genomics, Miami, Florida, USA.
John T. Macdonald Department of Human Genetics, Miami, Florida, USA.

Adam Naj (A)

Department of Biostatistics, Epidemiology, and Informatics, Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.

Elizabeth E Blue (EE)

Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Brotman Baty Institute for Precision Medicine, Seattle, Washington, USA.

Frederick Nusetor (F)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.

Dongyu Wang (D)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.

Eric Boerwinkle (E)

Department of Epidemiology, Human Genetics and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.

William S Bush (WS)

Cleveland Institute for Computational Biology, Cleveland, Ohio, USA.
Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio, USA.

Xiaoling Zhang (X)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.
Biomedical Genetics, Department of Medicine, Boston University Medical School, Boston, Massachusetts, USA.

Philip L De Jager (PL)

Center for Translational and Computational Neuroimmunology, Columbia University Medical Center, New York, New York, USA.

Josée Dupuis (J)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.
Department of Epidemiology, Biostatistics and Occupational Health, McGill University, Montréal, Quebec, Canada.

Lindsay A Farrer (LA)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.
Department of Neurology, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA.
Framingham Heart Study, Framingham, Massachusetts, USA.
Biomedical Genetics, Department of Medicine, Boston University Medical School, Boston, Massachusetts, USA.
Department of Ophthalmology, Department of Medicine, Boston University Medical School, Boston, Massachusetts, USA.
Department of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, USA.

Myriam Fornage (M)

Brown Foundation Institute of Molecular Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Human Genetics Center, School of Public Health, University of Texas Health Science Center at Houston, Houston, Texas, USA.

Eden Martin (E)

John P. Hussman Institute for Human Genomics, Miami, Florida, USA.
John T. Macdonald Department of Human Genetics, Miami, Florida, USA.
University of Miami Miller School of Medicine, Miami, Florida, USA.

Margaret Pericak-Vance (M)

John P. Hussman Institute for Human Genomics, Miami, Florida, USA.
John T. Macdonald Department of Human Genetics, Miami, Florida, USA.
University of Miami Miller School of Medicine, Miami, Florida, USA.

Sudha Seshadri (S)

Glenn Biggs Institute for Alzheimer's & Neurodegenerative Diseases, University of Texas Health Science Center, San Antonio, Texas, USA.

Ellen M Wijsman (EM)

Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Department of Biostatistics, University of Washington, Seattle, Washington, USA.
Department of Genome Sciences, University of Washington, Seattle, Washington, USA.

Li-San Wang (LS)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Gerard D Schellenberg (GD)

Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Penn Neurodegeneration Genomics Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Anita L Destefano (AL)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.
Department of Neurology, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA.

Jonathan L Haines (JL)

Cleveland Institute for Computational Biology, Cleveland, Ohio, USA.
Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio, USA.

Gina M Peloso (GM)

Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA.

Classifications MeSH