Judit Szarvas

Affiliations

DTU Food. Technical University of Denmark, Kongens Lyngby, Denmark, 2800, Danmark.

Publications (11)

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering.

Scientific reports

Avec: Johanne Ahrenfeldt , Madina Waisi , Isabella C Loft , Philip T L C Clausen , Rosa Allesøe , Rene S Hendriksen , Frank M Aarestrup , Ole Lund

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest.

mSystems

Avec: Derya Aytan-Aktug , Philip T L C Clausen , Patrick Munk , Saria Otani , Marcus Nguyen , James J Davis , Ole Lund , Frank M Aarestrup

Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses.

Microbial genomics

Avec: Nadim Rahman , Colman O'Cathail , Ahmad Zyoud , Alexey Sokolov , Bas Oude Munnink , Björn Grüning , Carla Cummins , Clara Amid , David F Nieuwenhuijse , Dávid Visontai , David Yu Yuan , Dipayan Gupta , Divyae K Prasad , Gábor Máté Gulyás , Gabriele Rinck , Jasmine McKinnon , Jeena Rajan , Jeff Knaggs , Jeffrey Edward Skiby , József Stéger , Khadim Gueye , Krisztián Papp , Maarten Hoek , Manish Kumar , Marianna A Ventouratou , Marie-Catherine Bouquieaux , Martin Koliba , Milena Mansurova , Muhammad Haseeb , Nathalie Worp , Peter W Harrison , Rasko Leinonen , Ross Thorne , Sandeep Selvakumar , Sarah Hunt , Sundar Venkataraman , Suran Jayathilaka , Timothée Cezard , Wolfgang Maier , Zahra Waheed , Zamin Iqbal , Frank Møller Aarestrup , Istvan Csabai , Marion Koopmans , Tony Burdett , Guy Cochrane

Whole genomes from bacteria collected at diagnostic units around the world 2020.

Scientific data

Avec: Sidsel Nag , Gunhild Larsen , Laura Elmlund Kohl Birkedahl , Gábor Máté Gulyás , Wojchiech Jakub Ciok , Timmie Mikkel Lagermann , Silva Tafaj , Susan Bradbury , Peter Collignon , Denise Daley , Victorien Dougnon , Kafayath Fabiyi , Boubacar Coulibaly , René Dembélé , Georgette Nikiema , Natama Magloire , Isidore Juste Ouindgueta , Zenat Zebin Hossain , Anowara Begum , Deyan Donchev , Mathew Diggle , LeeAnn Turnbull , Simon Lévesque , Livia Berlinger , Kirstine Kobberoe Sogaard , Paula Diaz Guevara , Carolina Duarte Valderrama , Panagiota Maikanti , Jana Amlerova , Pavel Drevinek , Jan Tkadlec , Milica Dilas , Achim Kaasch , Henrik Torkil Westh , Mohamed Azzedine Bachtarzi , Wahiba Amhis , Carolina Elisabeth Satán Salazar , JoséEduardo Villacis , Mária Angeles Dominguez Lúzon , Dámaris Berbel Palau , Claire Duployez , Maxime Paluche , Solomon Asante-Sefa , Mie Moller , Margaret Ip , Ivana Mareković , Agnes Pál-Sonnevend , Clementiza Elvezia Cocuzza , Asta Dambrauskiene , Alexandre Macanze , Anelsio Cossa , Inácio Mandomando , Philip Nwajiobi-Princewill , Iruka N Okeke , Aderemi O Kehinde , Ini Adebiyi , Ifeoluwa Akintayo , Oluwafemi Popoola , Anthony Onipede , Anita Blomfeldt , Nora Elisabeth Nyquist , Kiri Bocker , James Ussher , Amjad Ali , Nimat Ullah , Habibullah Khan , Natalie Weiler Gustafson , Ikhlas Jarrar , Arif Al-Hamad , Viravarn Luvira , Wantana Paveenkittiporn , Irmak Baran , James C L Mwansa , Linda Sikakwa , Kaunda Yamba , Rene Sjogren Hendriksen , Frank Moller Aarestrup

Phylogenetic Investigation of Norovirus Transmission between Humans and Animals.

Viruses

Avec: Nele Villabruna , Ray W Izquierdo Lara , Marion P G Koopmans , Miranda de Graaf

The first complete genome sequence of

Microbiology resource announcements

Avec: Pimlapas Leekitcharoenphon , Saria Otani , Tutu Mzee , Happiness Kumburu , Frederik Duus Møller , Frank M Aarestrup

Complete genome sequences of

Microbiology resource announcements

Avec: Sidsel Nag , Saria Otani , Laura Elmlund Kohl Birkedahl , Frederik Duus Møller , Solomon Asante-Sefa , Denise Daley , Natalie Weiler Gustafson , Mie Møller , Anthony Onipede , Silva Tafaj , Frank M Aarestrup

Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform.

Communications biology

Avec: Johanne Ahrenfeldt , Jose Luis Bellod Cisneros , Martin Christen Frølund Thomsen , Frank M Aarestrup , Ole Lund

Rapid Open-Source SNP-Based Clustering Offers an Alternative to Core Genome MLST for Outbreak Tracing in a Hospital Setting.

Frontiers in microbiology

Avec: Mette Damkjaer Bartels , Henrik Westh , Ole Lund

Global Distribution of

mSystems

Avec: Hannah-Marie Martiny , Patrick Munk , Christian Brinch , Frank M Aarestrup , Thomas Nordahl Petersen

SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies.

Microbiology spectrum

Avec: Derya Aytan-Aktug , Vladislav Grigorjev , Philip T L C Clausen , Patrick Munk , Marcus Nguyen , James J Davis , Frank M Aarestrup , Ole Lund

Réseau de co-auteurs

Frank M Aarestrup 7 collaborations

Ole Lund 5 collaborations

Philip T L C Clausen 3 collaborations

Patrick Munk 3 collaborations

Saria Otani 3 collaborations

Johanne Ahrenfeldt 2 collaborations

Derya Aytan-Aktug 2 collaborations

Marcus Nguyen 2 collaborations

James J Davis 2 collaborations

Gábor Máté Gulyás 2 collaborations

Sidsel Nag 2 collaborations

Laura Elmlund Kohl Birkedahl 2 collaborations

Silva Tafaj 2 collaborations

Denise Daley 2 collaborations

Solomon Asante-Sefa 2 collaborations

Anthony Onipede 2 collaborations

Natalie Weiler Gustafson 2 collaborations

Frederik Duus Møller 2 collaborations

Madina Waisi 1 collaboration

Isabella C Loft 1 collaboration

Rosa Allesøe 1 collaboration

Rene S Hendriksen 1 collaboration

Nadim Rahman 1 collaboration

Colman O'Cathail 1 collaboration

Ahmad Zyoud 1 collaboration

Alexey Sokolov 1 collaboration

Bas Oude Munnink 1 collaboration

Björn Grüning 1 collaboration

Carla Cummins 1 collaboration

Clara Amid 1 collaboration

David F Nieuwenhuijse 1 collaboration

Dávid Visontai 1 collaboration

David Yu Yuan 1 collaboration

Dipayan Gupta 1 collaboration

Divyae K Prasad 1 collaboration

Gabriele Rinck 1 collaboration

Jasmine McKinnon 1 collaboration

Jeena Rajan 1 collaboration

Jeff Knaggs 1 collaboration

Jeffrey Edward Skiby 1 collaboration

József Stéger 1 collaboration

Khadim Gueye 1 collaboration

Krisztián Papp 1 collaboration

Maarten Hoek 1 collaboration

Manish Kumar 1 collaboration

Marianna A Ventouratou 1 collaboration

Marie-Catherine Bouquieaux 1 collaboration

Martin Koliba 1 collaboration

Milena Mansurova 1 collaboration

Muhammad Haseeb 1 collaboration

Nathalie Worp 1 collaboration

Peter W Harrison 1 collaboration

Rasko Leinonen 1 collaboration

Ross Thorne 1 collaboration

Sandeep Selvakumar 1 collaboration

Sarah Hunt 1 collaboration

Sundar Venkataraman 1 collaboration

Suran Jayathilaka 1 collaboration

Timothée Cezard 1 collaboration

Wolfgang Maier 1 collaboration

Zahra Waheed 1 collaboration

Zamin Iqbal 1 collaboration

Frank Møller Aarestrup 1 collaboration

Istvan Csabai 1 collaboration

Marion Koopmans 1 collaboration

Tony Burdett 1 collaboration

Guy Cochrane 1 collaboration

Gunhild Larsen 1 collaboration

Wojchiech Jakub Ciok 1 collaboration

Timmie Mikkel Lagermann 1 collaboration

Susan Bradbury 1 collaboration

Peter Collignon 1 collaboration

Victorien Dougnon 1 collaboration

Kafayath Fabiyi 1 collaboration

Boubacar Coulibaly 1 collaboration

René Dembélé 1 collaboration

Georgette Nikiema 1 collaboration

Natama Magloire 1 collaboration

Isidore Juste Ouindgueta 1 collaboration

Zenat Zebin Hossain 1 collaboration

Anowara Begum 1 collaboration

Deyan Donchev 1 collaboration

Mathew Diggle 1 collaboration

LeeAnn Turnbull 1 collaboration

Simon Lévesque 1 collaboration

Livia Berlinger 1 collaboration

Kirstine Kobberoe Sogaard 1 collaboration

Paula Diaz Guevara 1 collaboration

Carolina Duarte Valderrama 1 collaboration

Panagiota Maikanti 1 collaboration

Jana Amlerova 1 collaboration

Pavel Drevinek 1 collaboration

Jan Tkadlec 1 collaboration

Milica Dilas 1 collaboration

Achim Kaasch 1 collaboration

Henrik Torkil Westh 1 collaboration

Mohamed Azzedine Bachtarzi 1 collaboration

Wahiba Amhis 1 collaboration

Carolina Elisabeth Satán Salazar 1 collaboration

JoséEduardo Villacis 1 collaboration

Mária Angeles Dominguez Lúzon 1 collaboration

Dámaris Berbel Palau 1 collaboration

Claire Duployez 1 collaboration

Maxime Paluche 1 collaboration

Mie Moller 1 collaboration

Margaret Ip 1 collaboration

Ivana Mareković 1 collaboration

Agnes Pál-Sonnevend 1 collaboration

Clementiza Elvezia Cocuzza 1 collaboration

Asta Dambrauskiene 1 collaboration

Alexandre Macanze 1 collaboration

Anelsio Cossa 1 collaboration

Inácio Mandomando 1 collaboration

Philip Nwajiobi-Princewill 1 collaboration

Iruka N Okeke 1 collaboration

Aderemi O Kehinde 1 collaboration

Ini Adebiyi 1 collaboration

Ifeoluwa Akintayo 1 collaboration

Oluwafemi Popoola 1 collaboration

Anita Blomfeldt 1 collaboration

Nora Elisabeth Nyquist 1 collaboration

Kiri Bocker 1 collaboration

James Ussher 1 collaboration

Amjad Ali 1 collaboration

Nimat Ullah 1 collaboration

Habibullah Khan 1 collaboration

Ikhlas Jarrar 1 collaboration

Arif Al-Hamad 1 collaboration

Viravarn Luvira 1 collaboration

Wantana Paveenkittiporn 1 collaboration

Irmak Baran 1 collaboration

James C L Mwansa 1 collaboration

Linda Sikakwa 1 collaboration

Kaunda Yamba 1 collaboration

Rene Sjogren Hendriksen 1 collaboration

Frank Moller Aarestrup 1 collaboration

Nele Villabruna 1 collaboration

Ray W Izquierdo Lara 1 collaboration

Marion P G Koopmans 1 collaboration

Miranda de Graaf 1 collaboration

Pimlapas Leekitcharoenphon 1 collaboration

Tutu Mzee 1 collaboration

Happiness Kumburu 1 collaboration

Mie Møller 1 collaboration

Jose Luis Bellod Cisneros 1 collaboration

Martin Christen Frølund Thomsen 1 collaboration

Mette Damkjaer Bartels 1 collaboration

Henrik Westh 1 collaboration

Hannah-Marie Martiny 1 collaboration

Christian Brinch 1 collaboration

Thomas Nordahl Petersen 1 collaboration

Vladislav Grigorjev 1 collaboration