Aaron Carass

Affiliations

Department of Electrical and Computer Engineering, The Johns Hopkins University, 105 Barton Hall, 3400 N. Charles St., Baltimore, MD 21218, USA; Department of Computer Science, The Johns Hopkins University, Baltimore, MD, USA.

Publications (43)

DeepHarmony: A deep learning approach to contrast harmonization across scanner changes.

Magnetic resonance imaging

Avec: Blake E Dewey , Can Zhao , Jacob C Reinhold , Aaron Carass , Kathryn C Fitzgerald , Elias S Sotirchos , Shiv Saidha , Jiwon Oh , Dzung L Pham , Peter A Calabresi , Peter C M van Zijl , Jerry L Prince

Effect of Direction and Frequency of Skull Motion on Mechanical Vulnerability of the Human Brain.

Journal of biomechanical engineering

Avec: Ruth J Okamoto , Jordan D Escarcega , Ahmed Alshareef , Aaron Carass , Jerry L Prince , Curtis L Johnson , Philip V Bayly

AUTOMATED VENTRICLE PARCELLATION AND EVAN'S RATIO COMPUTATION IN PRE- AND POST-SURGICAL VENTRICULOMEGALY.

Proceedings. IEEE International Symposium on Biomedical Imaging

Avec: Yuli Wang , Anqi Feng , Yuan Xue , Lianrui Zuo , Yihao Liu , Ari M Blitz , Mark G Luciano , Aaron Carass , Jerry L Prince

RAPID BRAIN MENINGES SURFACE RECONSTRUCTION WITH LAYER TOPOLOGY GUARANTEE.

Proceedings. IEEE International Symposium on Biomedical Imaging

Avec: Peiyu Duan , Yuan Xue , Shuo Han , Lianrui Zuo , Aaron Carass , Caitlyn Bernhard , Savannah Hays , Peter A Calabresi , Susan M Resnick , James S Duncan , Jerry L Prince

Investigation of probability maps in deep-learning-based brain ventricle parcellation.

Proceedings of SPIE--the International Society for Optical Engineering

Avec: Yuli Wang , Anqi Feng , Yuan Xue , Muhan Shao , Ari M Blitz , Mark G Luciano , Aaron Carass , Jerry L Prince

Image harmonization improves consistency of intra-rater delineations of MS lesions in heterogeneous MRI.

Neuroimage. Reports

Avec: Aaron Carass , Danielle Greenman , Blake E Dewey , Peter A Calabresi , Jerry L Prince , Dzung L Pham

Structured layer surface segmentation for retina OCT using fully convolutional regression networks.

Medical image analysis

Avec: Yufan He , Aaron Carass , Yihao Liu , Bruno M Jedynak , Sharon D Solomon , Shiv Saidha , Peter A Calabresi , Jerry L Prince

Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT.

Biomedical optics express

Avec: Yufan He , Aaron Carass , Yihao Liu , Bruno M Jedynak , Sharon D Solomon , Shiv Saidha , Peter A Calabresi , Jerry L Prince

Layer boundary evolution method for macular OCT layer segmentation.

Biomedical optics express

Avec: Yihao Liu , Aaron Carass , Yufan He , Bhavna J Antony , Angeliki Filippatou , Shiv Saidha , Sharon D Solomon , Peter A Calabresi , Jerry L Prince

Autoencoder based self-supervised test-time adaptation for medical image analysis.

Medical image analysis

Avec: Yufan He , Aaron Carass , Lianrui Zuo , Blake E Dewey , Jerry L Prince

Joint Image and Label Self-Super-Resolution.

Simulation and synthesis in medical imaging : ... International Workshop, SASHIMI ..., held in conjunction with MICCAI ..., proceedings. SASHIMI (Workshop)

Avec: Samuel W Remedios , Shuo Han , Blake E Dewey , Dzung L Pham , Jerry L Prince , Aaron Carass

Disentangled Representation Learning for OCTA Vessel Segmentation With Limited Training Data.

IEEE transactions on medical imaging

Avec: Yihao Liu , Aaron Carass , Lianrui Zuo , Yufan He , Shuo Han , Lorenzo Gregori , Sean Murray , Rohit Mishra , Jianqin Lei , Peter A Calabresi , Shiv Saidha , Jerry L Prince

Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging.

Journal of speech, language, and hearing research : JSLHR

Avec: Muhan Shao , Fangxu Xing , Aaron Carass , Xiao Liang , Jiachen Zhuo , Maureen Stone , Jonghye Woo , Jerry L Prince

A reproducibility evaluation of the effects of MRI defacing on brain segmentation.

medRxiv : the preprint server for health sciences

Avec: Chenyu Gao , Bennett A Landman , Jerry L Prince , Aaron Carass

Data-driven Uncertainty Quantification in Computational Human Head Models.

Computer methods in applied mechanics and engineering

Avec: Kshitiz Upadhyay , Dimitris G Giovanis , Ahmed Alshareef , Andrew K Knutsen , Curtis L Johnson , Aaron Carass , Philip V Bayly , Michael D Shields , K T Ramesh

Automatic cerebellum anatomical parcellation using U-Net with locally constrained optimization.

NeuroImage

Avec: Shuo Han , Aaron Carass , Yufan He , Jerry L Prince

Evaluating the Impact of Intensity Normalization on MR Image Synthesis.

Proceedings of SPIE--the International Society for Optical Engineering

Avec: Jacob C Reinhold , Blake E Dewey , Aaron Carass , Jerry L Prince

Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network.

Proceedings of SPIE--the International Society for Optical Engineering

Avec: Mallika Singh , Eleanor Pahl , Shangxian Wang , Aaron Carass , Junghoon Lee , Jerry L Prince

Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly.

NeuroImage. Clinical

Avec: Muhan Shao , Shuo Han , Aaron Carass , Xiang Li , Ari M Blitz , Jaehoon Shin , Jerry L Prince , Lotta M Ellingsen

ESPRESO: An algorithm to estimate the slice profile of a single magnetic resonance image.

Magnetic resonance imaging

Avec: Shuo Han , Samuel W Remedios , Michael Schär , Aaron Carass , Jerry L Prince

Coordinate Translator for Learning Deformable Medical Image Registration.

Multiscale multimodal medical imaging : Third International Workshop, MMMI 2022, held in conjunction with MICCAI 2022, Singapore, September 22, 2022, proceedings

Avec: Yihao Liu , Lianrui Zuo , Shuo Han , Yuan Xue , Jerry L Prince , Aaron Carass

Integrating material properties from magnetic resonance elastography into subject-specific computational models for the human brain.

Brain multiphysics

Avec: Ahmed Alshareef , Andrew K Knutsen , Curtis L Johnson , Aaron Carass , Kshitiz Upadhyay , Philip V Bayly , Dzung L Pham , Jerry L Prince , K T Ramesh

Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation.

Ophthalmic medical image analysis : 10th International Workshop, OMIA 2023, held in conjunction with MICCAI 2023, Vancouver, BC, Canada, October 12, 2023, Proceedings. OMIA (Workshop) (10th : 2023 : Vancouver, B.C. ; Online)

Avec: Shuwen Wei , Yihao Liu , Zhangxing Bian , Yuli Wang , Lianrui Zuo , Peter A Calabresi , Shiv Saidha , Jerry L Prince , Aaron Carass

Effect of Human Head Shape on the Risk of Traumatic Brain Injury: A Gaussian Process Regression-based Machine Learning Approach.

Military medicine

Avec: Kshitiz Upadhyay , Roshan Jagani , Dimitris G Giovanis , Ahmed Alshareef , Andrew K Knutsen , Curtis L Johnson , Aaron Carass , Philip V Bayly , Michael D Shields , K T Ramesh

Hierarchical Parcellation of the Cerebellum.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention

Avec: Shuo Han , Aaron Carass , Jerry L Prince

Longitudinal analysis of regional cerebellum volumes during normal aging.

NeuroImage

Avec: Shuo Han , Yang An , Aaron Carass , Jerry L Prince , Susan M Resnick

Fully Convolutional Boundary Regression for Retina OCT Segmentation.

Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention

Avec: Yufan He , Aaron Carass , Yihao Liu , Bruno M Jedynak , Sharon D Solomon , Shiv Saidha , Peter A Calabresi , Jerry L Prince

Retinal layer parcellation of optical coherence tomography images: Data resource for multiple sclerosis and healthy controls.

Data in brief

Avec: Yufan He , Aaron Carass , Sharon D Solomon , Shiv Saidha , Peter A Calabresi , Jerry L Prince

Applications of a deep learning method for anti-aliasing and super-resolution in MRI.

Magnetic resonance imaging

Avec: Can Zhao , Muhan Shao , Aaron Carass , Hao Li , Blake E Dewey , Lotta M Ellingsen , Jonghye Woo , Michael A Guttman , Ari M Blitz , Maureen Stone , Peter A Calabresi , Henry Halperin , Jerry L Prince

Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care.

Nature communications

Avec: Lena Maier-Hein , Matthias Eisenmann , Annika Reinke , Sinan Onogur , Marko Stankovic , Patrick Scholz , Tal Arbel , Hrvoje Bogunovic , Andrew P Bradley , Aaron Carass , Carolin Feldmann , Alejandro F Frangi , Peter M Full , Bram van Ginneken , Allan Hanbury , Katrin Honauer , Michal Kozubek , Bennett A Landman , Keno März , Oskar Maier , Klaus Maier-Hein , Bjoern H Menze , Henning Müller , Peter F Neher , Wiro Niessen , Nasir Rajpoot , Gregory C Sharp , Korsuk Sirinukunwattana , Stefanie Speidel , Christian Stock , Danail Stoyanov , Abdel Aziz Taha , Fons van der Sommen , Ching-Wei Wang , Marc-André Weber , Guoyan Zheng , Pierre Jannin , Annette Kopp-Schneider

DUAL-CYCLE CONSTRAINED BIJECTIVE VAE-GAN FOR TAGGED-TO-CINE MAGNETIC RESONANCE IMAGE SYNTHESIS.

Proceedings. IEEE International Symposium on Biomedical Imaging

Avec: Xiaofeng Liu , Fangxu Xing , Jerry L Prince , Aaron Carass , Maureen Stone , Georges El Fakhri , Jonghye Woo

MR Imaging of Human Brain Mechanics In Vivo: New Measurements to Facilitate the Development of Computational Models of Brain Injury.

Annals of biomedical engineering

Avec: Philip V Bayly , Ahmed Alshareef , Andrew K Knutsen , Kshitiz Upadhyay , Ruth J Okamoto , Aaron Carass , John A Butman , Dzung L Pham , Jerry L Prince , K T Ramesh , Curtis L Johnson

Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory.

NeuroImage

Avec: Lianrui Zuo , Blake E Dewey , Yihao Liu , Yufan He , Scott D Newsome , Ellen M Mowry , Susan M Resnick , Jerry L Prince , Aaron Carass

Automatic Coronary Wall and Atherosclerotic Plaque Segmentation from 3D Coronary CT Angiography.

Scientific reports

Avec: Ahmed M Ghanem , Ahmed H Hamimi , Jatin R Matta , Aaron Carass , Reham M Elgarf , Ahmed M Gharib , Khaled Z Abd-Elmoniem

Cerebellum Parcellation with Convolutional Neural Networks.

Proceedings of SPIE--the International Society for Optical Engineering

Avec: Shuo Han , Yufan He , Aaron Carass , Sarah H Ying , Jerry L Prince

Unsupervised MR-to-CT Synthesis Using Structure-Constrained CycleGAN.

IEEE transactions on medical imaging

Avec: Heran Yang , Jian Sun , Aaron Carass , Can Zhao , Junghoon Lee , Jerry L Prince , Zongben Xu

Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis.

Scientific reports

Avec: Aaron Carass , Snehashis Roy , Adrian Gherman , Jacob C Reinhold , Andrew Jesson , Tal Arbel , Oskar Maier , Heinz Handels , Mohsen Ghafoorian , Bram Platel , Ariel Birenbaum , Hayit Greenspan , Dzung L Pham , Ciprian M Crainiceanu , Peter A Calabresi , Jerry L Prince , William R Gray Roncal , Russell T Shinohara , Ipek Oguz

Deep learning enables accurate brain tissue microstructure analysis based on clinically feasible diffusion magnetic resonance imaging.

NeuroImage

Avec: Yuxing Li , Zhizheng Zhuo , Chenghao Liu , Yunyun Duan , Yulu Shi , Tingting Wang , Runzhi Li , Yanli Wang , Jiwei Jiang , Jun Xu , Decai Tian , Xinghu Zhang , Fudong Shi , Xiaofeng Zhang , Aaron Carass , Frederik Barkhof , Jerry L Prince , Chuyang Ye , Yaou Liu

Réseau de co-auteurs

Jerry L Prince 39 collaborations

Peter A Calabresi 15 collaborations

Yihao Liu 11 collaborations

Shuo Han 11 collaborations

Yufan He 11 collaborations

Shiv Saidha 10 collaborations

Blake E Dewey 9 collaborations

Lianrui Zuo 9 collaborations

Dzung L Pham 7 collaborations

Yuan Xue 7 collaborations

Ahmed Alshareef 5 collaborations

Curtis L Johnson 5 collaborations

Philip V Bayly 5 collaborations

Muhan Shao 5 collaborations

Sharon D Solomon 5 collaborations

Yuli Wang 4 collaborations

Ari M Blitz 4 collaborations

Susan M Resnick 4 collaborations

Samuel W Remedios 4 collaborations

Kshitiz Upadhyay 4 collaborations

Andrew K Knutsen 4 collaborations

K T Ramesh 4 collaborations

Can Zhao 3 collaborations

Jacob C Reinhold 3 collaborations

Anqi Feng 3 collaborations

Bruno M Jedynak 3 collaborations

Maureen Stone 3 collaborations

Jonghye Woo 3 collaborations

Bennett A Landman 3 collaborations

Ruth J Okamoto 2 collaborations

Mark G Luciano 2 collaborations

Peiyu Duan 2 collaborations

Fangxu Xing 2 collaborations

Jiachen Zhuo 2 collaborations

Chenyu Gao 2 collaborations

Dimitris G Giovanis 2 collaborations

Michael D Shields 2 collaborations

Junghoon Lee 2 collaborations

Lotta M Ellingsen 2 collaborations

Zhangxing Bian 2 collaborations

Tal Arbel 2 collaborations

Oskar Maier 2 collaborations

Scott D Newsome 2 collaborations

Ellen M Mowry 2 collaborations

Kathryn C Fitzgerald 1 collaboration

Elias S Sotirchos 1 collaboration

Jiwon Oh 1 collaboration

Peter C M van Zijl 1 collaboration

Jordan D Escarcega 1 collaboration

Caitlyn Bernhard 1 collaboration

Savannah Hays 1 collaboration

James S Duncan 1 collaboration

Danielle Greenman 1 collaboration

Bhavna J Antony 1 collaboration

Angeliki Filippatou 1 collaboration

Lorenzo Gregori 1 collaboration

Sean Murray 1 collaboration

Rohit Mishra 1 collaboration

Jianqin Lei 1 collaboration

Xiao Liang 1 collaboration

Mallika Singh 1 collaboration

Eleanor Pahl 1 collaboration

Shangxian Wang 1 collaboration

Xiang Li 1 collaboration

Jaehoon Shin 1 collaboration

Michael Schär 1 collaboration

Shuwen Wei 1 collaboration

Roshan Jagani 1 collaboration

Yang An 1 collaboration

Hao Li 1 collaboration

Michael A Guttman 1 collaboration

Henry Halperin 1 collaboration

Lena Maier-Hein 1 collaboration

Matthias Eisenmann 1 collaboration

Annika Reinke 1 collaboration

Sinan Onogur 1 collaboration

Marko Stankovic 1 collaboration

Patrick Scholz 1 collaboration

Hrvoje Bogunovic 1 collaboration

Andrew P Bradley 1 collaboration

Carolin Feldmann 1 collaboration

Alejandro F Frangi 1 collaboration

Peter M Full 1 collaboration

Bram van Ginneken 1 collaboration

Allan Hanbury 1 collaboration

Katrin Honauer 1 collaboration

Michal Kozubek 1 collaboration

Keno März 1 collaboration

Klaus Maier-Hein 1 collaboration

Bjoern H Menze 1 collaboration

Henning Müller 1 collaboration

Peter F Neher 1 collaboration

Wiro Niessen 1 collaboration

Nasir Rajpoot 1 collaboration

Gregory C Sharp 1 collaboration

Korsuk Sirinukunwattana 1 collaboration

Stefanie Speidel 1 collaboration

Christian Stock 1 collaboration

Danail Stoyanov 1 collaboration

Abdel Aziz Taha 1 collaboration

Fons van der Sommen 1 collaboration

Ching-Wei Wang 1 collaboration

Marc-André Weber 1 collaboration

Guoyan Zheng 1 collaboration

Pierre Jannin 1 collaboration

Annette Kopp-Schneider 1 collaboration

Xiaofeng Liu 1 collaboration

Georges El Fakhri 1 collaboration

John A Butman 1 collaboration

Ahmed M Ghanem 1 collaboration

Ahmed H Hamimi 1 collaboration

Jatin R Matta 1 collaboration

Reham M Elgarf 1 collaboration

Ahmed M Gharib 1 collaboration

Khaled Z Abd-Elmoniem 1 collaboration

Sarah H Ying 1 collaboration

Heran Yang 1 collaboration

Jian Sun 1 collaboration

Zongben Xu 1 collaboration

Snehashis Roy 1 collaboration

Adrian Gherman 1 collaboration

Andrew Jesson 1 collaboration

Heinz Handels 1 collaboration

Mohsen Ghafoorian 1 collaboration

Bram Platel 1 collaboration

Ariel Birenbaum 1 collaboration

Hayit Greenspan 1 collaboration

Ciprian M Crainiceanu 1 collaboration

William R Gray Roncal 1 collaboration

Russell T Shinohara 1 collaboration

Ipek Oguz 1 collaboration

Chang Yan 1 collaboration

Rao P Gullapalli 1 collaboration

Savannah P Hays 1 collaboration

Murat Bilgel 1 collaboration

Yuxing Li 1 collaboration

Zhizheng Zhuo 1 collaboration

Chenghao Liu 1 collaboration

Yunyun Duan 1 collaboration

Yulu Shi 1 collaboration

Tingting Wang 1 collaboration

Runzhi Li 1 collaboration

Yanli Wang 1 collaboration

Jiwei Jiang 1 collaboration

Jun Xu 1 collaboration

Decai Tian 1 collaboration

Xinghu Zhang 1 collaboration

Fudong Shi 1 collaboration

Xiaofeng Zhang 1 collaboration

Frederik Barkhof 1 collaboration

Chuyang Ye 1 collaboration

Yaou Liu 1 collaboration