Alexander Karollus

Affiliations

School of Computation, Information and Technology, Technical University of Munich, Garching, Germany.

Publications (6)

Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events.

Scientific reports

Avec: Elisabeth Esser , Eva C Schulte , Alexander Graf , Alexander Karollus , Nicholas H Smith , Thomas Michler , Stefan Dvoretskii , Angel Angelov , Michael Sonnabend , Silke Peter , Christina Engesser , Aleksandar Radonic , Andrea Thürmer , Max von Kleist , Friedemann Gebhardt , Clarissa Prazeres da Costa , Dirk H Busch , Maximilian Muenchhoff , Helmut Blum , Oliver T Keppler , Julien Gagneur , Ulrike Protzer

Predicting mean ribosome load for 5'UTR of any length using deep learning.

PLoS computational biology

Avec: Alexander Karollus , Žiga Avsec , Julien Gagneur

scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

bioRxiv : the preprint server for biology

Avec: Johannes C Hingerl , Laura D Martens , Alexander Karollus , Trevor Manz , Jason D Buenrostro , Fabian J Theis , Julien Gagneur

The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data.

Bioinformatics (Oxford, England)

Avec: Dennis Hecker , Fatemeh Behjati Ardakani , Alexander Karollus , Julien Gagneur , Marcel H Schulz

Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers.

Genome biology

Avec: Alexander Karollus , Thomas Mauermeier , Julien Gagneur

Species-aware DNA language models capture regulatory elements and their evolution.

Genome biology

Avec: Alexander Karollus , Johannes Hingerl , Dennis Gankin , Martin Grosshauser , Kristian Klemon , Julien Gagneur

Réseau de co-auteurs

Julien Gagneur 6 collaborations

Elisabeth Esser 1 collaboration

Eva C Schulte 1 collaboration

Alexander Graf 1 collaboration

Nicholas H Smith 1 collaboration

Thomas Michler 1 collaboration

Stefan Dvoretskii 1 collaboration

Angel Angelov 1 collaboration

Michael Sonnabend 1 collaboration

Silke Peter 1 collaboration

Christina Engesser 1 collaboration

Aleksandar Radonic 1 collaboration

Andrea Thürmer 1 collaboration

Max von Kleist 1 collaboration

Friedemann Gebhardt 1 collaboration

Clarissa Prazeres da Costa 1 collaboration

Dirk H Busch 1 collaboration

Maximilian Muenchhoff 1 collaboration

Helmut Blum 1 collaboration

Oliver T Keppler 1 collaboration

Ulrike Protzer 1 collaboration

Žiga Avsec 1 collaboration

Johannes C Hingerl 1 collaboration

Laura D Martens 1 collaboration

Trevor Manz 1 collaboration

Jason D Buenrostro 1 collaboration

Fabian J Theis 1 collaboration

Dennis Hecker 1 collaboration

Fatemeh Behjati Ardakani 1 collaboration

Marcel H Schulz 1 collaboration

Thomas Mauermeier 1 collaboration

Johannes Hingerl 1 collaboration

Dennis Gankin 1 collaboration

Martin Grosshauser 1 collaboration

Kristian Klemon 1 collaboration