Behrouz Shamsaei

Affiliations

Division of Biostatistics and Bioinformatics, Department of Environmental and Public Health Sciences, University of Cincinnati College of Medicine, Cincinnati, OH, USA.

Publications (9)

GRAND: a database of gene regulatory network models across human conditions.

Nucleic acids research

Avec: Marouen Ben Guebila , Camila M Lopes-Ramos , Deborah Weighill , Abhijeet Rajendra Sonawane , Rebekka Burkholz , Behrouz Shamsaei , John Platig , Kimberly Glass , Marieke L Kuijjer , John Quackenbush

Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma.

bioRxiv : the preprint server for biology

Avec: Megan E Bischoff , Behrouz Shamsaei , Juechen Yang , Dina Secic , Bhargav Vemuri , Julie A Reisz , Angelo D'Alessandro , Caterina Bartolacci , Rafal Adamczak , Lucas Schmidt , Jiang Wang , Amelia Martines , Jacek Biesiada , Katherine E Vest , Pier P Scaglioni , David R Plas , Krushna C Patra , Shuchi Gulati , Julio A Landero Figueroa , Jarek Meller , J Tom Cunningham , Maria F Czyzyk-Krzeska

Connecting omics signatures and revealing biological mechanisms with iLINCS.

Nature communications

Avec: Marcin Pilarczyk , Mehdi Fazel-Najafabadi , Michal Kouril , Behrouz Shamsaei , Juozas Vasiliauskas , Wen Niu , Naim Mahi , Lixia Zhang , Nicholas A Clark , Yan Ren , Shana White , Rashid Karim , Huan Xu , Jacek Biesiada , Mark F Bennett , Sarah E Davidson , John F Reichard , Kurt Roberts , Vasileios Stathias , Amar Koleti , Dusica Vidovic , Daniel J B Clarke , Stephan C Schürer , Avi Ma'ayan , Jarek Meller , Mario Medvedovic

Accelerating drug discovery and repurposing by combining transcriptional signature connectivity with docking.

Science advances

Avec: Alexander W Thorman , James Reigle , Somchai Chutipongtanate , Juechen Yang , Behrouz Shamsaei , Marcin Pilarczyk , Mehdi Fazel-Najafabadi , Rafal Adamczak , Michal Kouril , Surbhi Bhatnagar , Sarah Hummel , Wen Niu , Ardythe L Morrow , Maria F Czyzyk-Krzeska , Robert McCullumsmith , William Seibel , Nicolas Nassar , Yi Zheng , David A Hildeman , Mario Medvedovic , Andrew B Herr , Jarek Meller

Identification of candidate repurposable drugs to combat COVID-19 using a signature-based approach.

Scientific reports

Avec: Sinead M O'Donovan , Ali Imami , Hunter Eby , Nicholas D Henkel , Justin Fortune Creeden , Sophie Asah , Xiaolu Zhang , Xiaojun Wu , Rawan Alnafisah , R Travis Taylor , James Reigle , Alexander Thorman , Behrouz Shamsaei , Jarek Meller , Robert E McCullumsmith

Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma.

Cancer discovery

Avec: Megan E Bischoff , Behrouz Shamsaei , Juechen Yang , Dina Secic , Bhargav Vemuri , Julie A Reisz , Angelo D'Alessandro , Caterina Bartolacci , Rafal Adamczak , Lucas Schmidt , Jiang Wang , Amelia Martines , Jahnavi Venkat , Vanina Toffessi Tcheuyap , Jacek Biesiada , Catherine A Behrmann , Katherine E Vest , James Brugarolas , Pier Paolo Scaglioni , David R Plas , Krushna C Patra , Shuchi Gulati , Julio A Landero Figueroa , Jarek Meller , John T Cunningham , Maria F Czyzyk-Krzeska

Identification of new drug treatments to combat COVID19: A signature-based approach using iLINCS.

Research square

Avec: Sinead M O'Donovan , Hunter Eby , Nicholas D Henkel , Justin Creeden , Ali Imami , Sophie Asah , Xiaolu Zhang , Xiaojun Wu , Rawan Alnafisah , R Travis Taylor , James Reigle , Alexander Thorman , Behrouz Shamsaei , Jarek Meller , Robert E McCullumsmith

piNET: a versatile web platform for downstream analysis and visualization of proteomics data.

Nucleic acids research

Avec: Behrouz Shamsaei , Szymon Chojnacki , Marcin Pilarczyk , Mehdi Najafabadi , Wen Niu , Chuming Chen , Karen Ross , Andrea Matlock , Jeremy Muhlich , Somchai Chutipongtanate , Jie Zheng , John Turner , Dušica Vidović , Jake Jaffe , Michael MacCoss , Cathy Wu , Ajay Pillai , Avi Ma'ayan , Stephan Schürer , Michal Kouril , Mario Medvedovic , Jarek Meller

Tobacco smoking induces metabolic reprogramming of renal cell carcinoma.

The Journal of clinical investigation

Avec: James Reigle , Dina Secic , Jacek Biesiada , Collin Wetzel , Behrouz Shamsaei , Johnson Chu , Yuanwei Zang , Xiang Zhang , Nicholas J Talbot , Megan E Bischoff , Yongzhen Zhang , Charuhas V Thakar , Krishnanath Gaitonde , Abhinav Sidana , Hai Bui , John T Cunningham , Qing Zhang , Laura S Schmidt , W Marston Linehan , Mario Medvedovic , David R Plas , Julio A Landero Figueroa , Jarek Meller , Maria F Czyzyk-Krzeska

Réseau de co-auteurs

Jarek Meller 8 collaborations

Jacek Biesiada 4 collaborations

Maria F Czyzyk-Krzeska 4 collaborations

Mario Medvedovic 4 collaborations

James Reigle 4 collaborations

Megan E Bischoff 3 collaborations

Juechen Yang 3 collaborations

Dina Secic 3 collaborations

Rafal Adamczak 3 collaborations

David R Plas 3 collaborations

Julio A Landero Figueroa 3 collaborations

Marcin Pilarczyk 3 collaborations

Michal Kouril 3 collaborations

Wen Niu 3 collaborations

Bhargav Vemuri 2 collaborations

Julie A Reisz 2 collaborations

Angelo D'Alessandro 2 collaborations

Caterina Bartolacci 2 collaborations

Lucas Schmidt 2 collaborations

Jiang Wang 2 collaborations

Amelia Martines 2 collaborations

Katherine E Vest 2 collaborations

Krushna C Patra 2 collaborations

Shuchi Gulati 2 collaborations

Mehdi Fazel-Najafabadi 2 collaborations

Avi Ma'ayan 2 collaborations

Somchai Chutipongtanate 2 collaborations

Sinead M O'Donovan 2 collaborations

Ali Imami 2 collaborations

Hunter Eby 2 collaborations

Nicholas D Henkel 2 collaborations

Sophie Asah 2 collaborations

Xiaolu Zhang 2 collaborations

Xiaojun Wu 2 collaborations

Rawan Alnafisah 2 collaborations

R Travis Taylor 2 collaborations

Alexander Thorman 2 collaborations

Robert E McCullumsmith 2 collaborations

John T Cunningham 2 collaborations

Marouen Ben Guebila 1 collaboration

Camila M Lopes-Ramos 1 collaboration

Deborah Weighill 1 collaboration

Abhijeet Rajendra Sonawane 1 collaboration

Rebekka Burkholz 1 collaboration

John Platig 1 collaboration

Kimberly Glass 1 collaboration

Marieke L Kuijjer 1 collaboration

John Quackenbush 1 collaboration

Pier P Scaglioni 1 collaboration

J Tom Cunningham 1 collaboration

Juozas Vasiliauskas 1 collaboration

Naim Mahi 1 collaboration

Lixia Zhang 1 collaboration

Nicholas A Clark 1 collaboration

Yan Ren 1 collaboration

Shana White 1 collaboration

Rashid Karim 1 collaboration

Huan Xu 1 collaboration

Mark F Bennett 1 collaboration

Sarah E Davidson 1 collaboration

John F Reichard 1 collaboration

Kurt Roberts 1 collaboration

Vasileios Stathias 1 collaboration

Amar Koleti 1 collaboration

Dusica Vidovic 1 collaboration

Daniel J B Clarke 1 collaboration

Stephan C Schürer 1 collaboration

Alexander W Thorman 1 collaboration

Surbhi Bhatnagar 1 collaboration

Sarah Hummel 1 collaboration

Ardythe L Morrow 1 collaboration

Robert McCullumsmith 1 collaboration

William Seibel 1 collaboration

Nicolas Nassar 1 collaboration

Yi Zheng 1 collaboration

David A Hildeman 1 collaboration

Andrew B Herr 1 collaboration

Justin Fortune Creeden 1 collaboration

Jahnavi Venkat 1 collaboration

Vanina Toffessi Tcheuyap 1 collaboration

Catherine A Behrmann 1 collaboration

James Brugarolas 1 collaboration

Pier Paolo Scaglioni 1 collaboration

Justin Creeden 1 collaboration

Szymon Chojnacki 1 collaboration

Mehdi Najafabadi 1 collaboration

Chuming Chen 1 collaboration

Karen Ross 1 collaboration

Andrea Matlock 1 collaboration

Jeremy Muhlich 1 collaboration

Jie Zheng 1 collaboration

John Turner 1 collaboration

Dušica Vidović 1 collaboration

Jake Jaffe 1 collaboration

Michael MacCoss 1 collaboration

Cathy Wu 1 collaboration

Ajay Pillai 1 collaboration

Stephan Schürer 1 collaboration

Collin Wetzel 1 collaboration

Johnson Chu 1 collaboration

Yuanwei Zang 1 collaboration

Xiang Zhang 1 collaboration

Nicholas J Talbot 1 collaboration

Yongzhen Zhang 1 collaboration

Charuhas V Thakar 1 collaboration

Krishnanath Gaitonde 1 collaboration

Abhinav Sidana 1 collaboration

Hai Bui 1 collaboration

Qing Zhang 1 collaboration

Laura S Schmidt 1 collaboration

W Marston Linehan 1 collaboration