Caitlin M A Simopoulos

Affiliations

Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, Ottawa Institute of Systems Biology, University of Ottawa, Ottawa, ON K1H 8M5, Canada.
Faculty of Medicine, SIMM-University of Ottawa Joint Research Center in Systems and Personalized Pharmacology, University of Ottawa, Ottawa, ON K1H 8M5, Canada.

Publications (7)

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies.

Bioinformatics (Oxford, England)

Avec: Caitlin M A Simopoulos , Zhibin Ning , Xu Zhang , Leyuan Li , Krystal Walker , Mathieu Lavallée-Adam , Daniel Figeys

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics.

Nature communications

Avec: Leyuan Li , Tong Wang , Zhibin Ning , Xu Zhang , James Butcher , Joeselle M Serrana , Caitlin M A Simopoulos , Janice Mayne , Alain Stintzi , David R Mack , Yang-Yu Liu , Daniel Figeys

Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships.

G3 (Bethesda, Md.)

Avec: Caitlin M A Simopoulos , Elizabeth A Weretilnyk , G Brian Golding

Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress.

BMC genomics

Avec: Caitlin M A Simopoulos , Mitchell J R MacLeod , Solmaz Irani , Wilson W L Sung , Marc J Champigny , Peter S Summers , G Brian Golding , Elizabeth A Weretilnyk

Novel Bioinformatics Strategies Driving Dynamic Metaproteomic Studies.

Methods in molecular biology (Clifton, N.J.)

Avec: Caitlin M A Simopoulos , Daniel Figeys , Mathieu Lavallée-Adam

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening.

mSystems

Avec: Caitlin M A Simopoulos , Zhibin Ning , Leyuan Li , Mona M Khamis , Xu Zhang , Mathieu Lavallée-Adam , Daniel Figeys

iMetaLab Suite: A one-stop toolset for metaproteomics.

iMeta

Avec: Leyuan Li , Zhibin Ning , Kai Cheng , Xu Zhang , Caitlin M A Simopoulos , Daniel Figeys

Réseau de co-auteurs

Daniel Figeys 5 collaborations

Zhibin Ning 4 collaborations

Xu Zhang 4 collaborations

Leyuan Li 4 collaborations

Mathieu Lavallée-Adam 3 collaborations

Elizabeth A Weretilnyk 2 collaborations

G Brian Golding 2 collaborations

Krystal Walker 1 collaboration

Tong Wang 1 collaboration

James Butcher 1 collaboration

Joeselle M Serrana 1 collaboration

Janice Mayne 1 collaboration

Alain Stintzi 1 collaboration

David R Mack 1 collaboration

Yang-Yu Liu 1 collaboration

Mitchell J R MacLeod 1 collaboration

Solmaz Irani 1 collaboration

Wilson W L Sung 1 collaboration

Marc J Champigny 1 collaboration

Peter S Summers 1 collaboration

Mona M Khamis 1 collaboration

Kai Cheng 1 collaboration