Christopher Pockrandt

Affiliations

Freie Universität, Berlin, Germany.
Max Planck Institute for Molecular Genetics, Berlin, Germany.

Publications (9)

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9.

BMC biotechnology

Avec: Laurence O W Wilson , Sara Hetzel , Christopher Pockrandt , Knut Reinert , Denis C Bauer

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure.

Genome biology

Avec: Ales Varabyou , Markus J Sommer , Beril Erdogdu , Ida Shinder , Ilia Minkin , Kuan-Hao Chao , Sukhwan Park , Jakob Heinz , Christopher Pockrandt , Alaina Shumate , Natalia Rincon , Daniela Puiu , Martin Steinegger , Steven L Salzberg , Mihaela Pertea

Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.

Genetics

Avec: Ales Varabyou , Christopher Pockrandt , Steven L Salzberg , Mihaela Pertea

TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.

Bioinformatics (Oxford, England)

Avec: Ales Varabyou , Geo Pertea , Christopher Pockrandt , Mihaela Pertea

PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.

Bioinformatics (Oxford, England)

Avec: Christopher Pockrandt , Martin Steinegger , Steven L Salzberg

Metagenomic classification with KrakenUniq on low-memory computers.

Journal of open source software

Avec: Christopher Pockrandt , Aleksey V Zimin , Steven L Salzberg

GenMap: ultra-fast computation of genome mappability.

Bioinformatics (Oxford, England)

Avec: Christopher Pockrandt , Mai Alzamel , Costas S Iliopoulos , Knut Reinert

Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.

bioRxiv : the preprint server for biology

Avec: Ales Varabyou , Christopher Pockrandt , Steven L Salzberg , Mihaela Pertea

Metagenome analysis using the Kraken software suite.

Nature protocols

Avec: Jennifer Lu , Natalia Rincon , Derrick E Wood , Florian P Breitwieser , Christopher Pockrandt , Ben Langmead , Steven L Salzberg , Martin Steinegger

Réseau de co-auteurs

Steven L Salzberg 6 collaborations

Ales Varabyou 4 collaborations

Mihaela Pertea 4 collaborations

Martin Steinegger 3 collaborations

Knut Reinert 2 collaborations

Natalia Rincon 2 collaborations

Laurence O W Wilson 1 collaboration

Sara Hetzel 1 collaboration

Denis C Bauer 1 collaboration

Markus J Sommer 1 collaboration

Beril Erdogdu 1 collaboration

Ida Shinder 1 collaboration

Ilia Minkin 1 collaboration

Kuan-Hao Chao 1 collaboration

Sukhwan Park 1 collaboration

Jakob Heinz 1 collaboration

Alaina Shumate 1 collaboration

Daniela Puiu 1 collaboration

Geo Pertea 1 collaboration

Aleksey V Zimin 1 collaboration

Mai Alzamel 1 collaboration

Costas S Iliopoulos 1 collaboration

Jennifer Lu 1 collaboration

Derrick E Wood 1 collaboration

Florian P Breitwieser 1 collaboration

Ben Langmead 1 collaboration