Daniel Asarnow

Affiliations

Department of Biochemistry and Biophysics, University of California San Francisco, 600 16th Street, San Francisco, CA 94158, USA.

Publications (15)

Classifying liganded states in heterogeneous single-particle cryo-EM datasets.

Microscopy (Oxford, England)

Avec: William R Arnold , Daniel Asarnow , Yifan Cheng

A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines.

bioRxiv : the preprint server for biology

Avec: Jimin Lee , Cameron Stewart , Alexandra Schaefer , Elizabeth M Leaf , Young-Jun Park , Daniel Asarnow , John M Powers , Catherine Treichel , Davide Corti , Ralph Baric , Neil P King , David Veesler

Recent advances in infectious disease research using cryo-electron tomography.

Frontiers in molecular biosciences

Avec: Daniel Asarnow , Vada A Becker , Daija Bobe , Charlie Dubbledam , Jake D Johnston , Mykhailo Kopylov , Nathalie R Lavoie , Qiuye Li , Jacob M Mattingly , Joshua H Mendez , Mohammadreza Paraan , Jack Turner , Viraj Upadhye , Richard M Walsh , Meghna Gupta , Edward T Eng

Enhancing the signal-to-noise ratio and generating contrast for cryo-EM images with convolutional neural networks.

IUCrJ

Avec: Eugene Palovcak , Daniel Asarnow , Melody G Campbell , Zanlin Yu , Yifan Cheng

Structural insight into TRPV5 channel function and modulation.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Shangyu Dang , Mark K van Goor , Daniel Asarnow , YongQiang Wang , David Julius , Yifan Cheng , Jenny van der Wijst

Full-spike deep mutational scanning helps predict the evolutionary success of SARS-CoV-2 clades.

bioRxiv : the preprint server for biology

Avec: Bernadeta Dadonaite , Jack Brown , Teagan E McMahon , Ariana G Farrell , Daniel Asarnow , Cameron Stewart , Jenni Logue , Ben Murrell , Helen Y Chu , David Veesler , Jesse D Bloom

CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.

bioRxiv : the preprint server for biology

Avec: Meghna Gupta , Caleigh M Azumaya , Michelle Moritz , Sergei Pourmal , Amy Diallo , Gregory E Merz , Gwendolyn Jang , Mehdi Bouhaddou , Andrea Fossati , Axel F Brilot , Devan Diwanji , Evelyn Hernandez , Nadia Herrera , Huong T Kratochvil , Victor L Lam , Fei Li , Yang Li , Henry C Nguyen , Carlos Nowotny , Tristan W Owens , Jessica K Peters , Alexandrea N Rizo , Ursula Schulze-Gahmen , Amber M Smith , Iris D Young , Zanlin Yu , Daniel Asarnow , Christian Billesbølle , Melody G Campbell , Jen Chen , Kuei-Ho Chen , Un Seng Chio , Miles Sasha Dickinson , Loan Doan , Mingliang Jin , Kate Kim , Junrui Li , Yen-Li Li , Edmond Linossi , Yanxin Liu , Megan Lo , Jocelyne Lopez , Kyle E Lopez , Adamo Mancino , Frank R Moss , Michael D Paul , Komal Ishwar Pawar , Adrian Pelin , Thomas H Pospiech , Cristina Puchades , Soumya Govinda Remesh , Maliheh Safari , Kaitlin Schaefer , Ming Sun , Mariano C Tabios , Aye C Thwin , Erron W Titus , Raphael Trenker , Eric Tse , Tsz Kin Martin Tsui , Feng Wang , Kaihua Zhang , Yang Zhang , Jianhua Zhao , Fengbo Zhou , Yuan Zhou , Lorena Zuliani-Alvarez , Auteur inconnu , David A Agard , Yifan Cheng , James S Fraser , Natalia Jura , Tanja Kortemme , Aashish Manglik , Daniel R Southworth , Robert M Stroud , Danielle L Swaney , Nevan J Krogan , Adam Frost , Oren S Rosenberg , Kliment A Verba

Broadly neutralizing antibodies against emerging delta-coronaviruses.

bioRxiv : the preprint server for biology

Avec: Megi Rexhepaj , Young-Jun Park , Lisa Perruzza , Daniel Asarnow , Matthew McCallum , Katja Culap , Christian Saliba , Giada Leoni , Alessio Balmeli , Courtney Yoshiyama , Miles S Dickinson , Joel Quispe , Jack T Brown , M Alejandra Tortorici , Kaitlin R Sprouse , Ashley L Taylor , Tyler N Starr , Davide Corti , Fabio Begnini , David Veesler

A broadly generalizable stabilization strategy for sarbecovirus fusion machinery vaccines.

Nature communications

Avec: Jimin Lee , Cameron Stewart , Alexandra Schäfer , Elizabeth M Leaf , Young-Jun Park , Daniel Asarnow , John M Powers , Catherine Treichel , Kaitlin R Sprouse , Davide Corti , Ralph Baric , Neil P King , David Veesler

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.

Science (New York, N.Y.)

Avec: David E Gordon , Joseph Hiatt , Mehdi Bouhaddou , Veronica V Rezelj , Svenja Ulferts , Hannes Braberg , Alexander S Jureka , Kirsten Obernier , Jeffrey Z Guo , Jyoti Batra , Robyn M Kaake , Andrew R Weckstein , Tristan W Owens , Meghna Gupta , Sergei Pourmal , Erron W Titus , Merve Cakir , Margaret Soucheray , Michael McGregor , Zeynep Cakir , Gwendolyn Jang , Matthew J O'Meara , Tia A Tummino , Ziyang Zhang , Helene Foussard , Ajda Rojc , Yuan Zhou , Dmitry Kuchenov , Ruth Hüttenhain , Jiewei Xu , Manon Eckhardt , Danielle L Swaney , Jacqueline M Fabius , Manisha Ummadi , Beril Tutuncuoglu , Ujjwal Rathore , Maya Modak , Paige Haas , Kelsey M Haas , Zun Zar Chi Naing , Ernst H Pulido , Ying Shi , Inigo Barrio-Hernandez , Danish Memon , Eirini Petsalaki , Alistair Dunham , Miguel Correa Marrero , David Burke , Cassandra Koh , Thomas Vallet , Jesus A Silvas , Caleigh M Azumaya , Christian Billesbølle , Axel F Brilot , Melody G Campbell , Amy Diallo , Miles Sasha Dickinson , Devan Diwanji , Nadia Herrera , Nick Hoppe , Huong T Kratochvil , Yanxin Liu , Gregory E Merz , Michelle Moritz , Henry C Nguyen , Carlos Nowotny , Cristina Puchades , Alexandrea N Rizo , Ursula Schulze-Gahmen , Amber M Smith , Ming Sun , Iris D Young , Jianhua Zhao , Daniel Asarnow , Justin Biel , Alisa Bowen , Julian R Braxton , Jen Chen , Cynthia M Chio , Un Seng Chio , Ishan Deshpande , Loan Doan , Bryan Faust , Sebastian Flores , Mingliang Jin , Kate Kim , Victor L Lam , Fei Li , Junrui Li , Yen-Li Li , Yang Li , Xi Liu , Megan Lo , Kyle E Lopez , Arthur A Melo , Frank R Moss , Phuong Nguyen , Joana Paulino , Komal Ishwar Pawar , Jessica K Peters , Thomas H Pospiech , Maliheh Safari , Smriti Sangwan , Kaitlin Schaefer , Paul V Thomas , Aye C Thwin , Raphael Trenker , Eric Tse , Tsz Kin Martin Tsui , Feng Wang , Natalie Whitis , Zanlin Yu , Kaihua Zhang , Yang Zhang , Fengbo Zhou , Daniel Saltzberg , Auteur inconnu , Anthony J Hodder , Amber S Shun-Shion , Daniel M Williams , Kris M White , Romel Rosales , Thomas Kehrer , Lisa Miorin , Elena Moreno , Arvind H Patel , Suzannah Rihn , Mir M Khalid , Albert Vallejo-Gracia , Parinaz Fozouni , Camille R Simoneau , Theodore L Roth , David Wu , Mohd Anisul Karim , Maya Ghoussaini , Ian Dunham , Francesco Berardi , Sebastian Weigang , Maxime Chazal , Jisoo Park , James Logue , Marisa McGrath , Stuart Weston , Robert Haupt , C James Hastie , Matthew Elliott , Fiona Brown , Kerry A Burness , Elaine Reid , Mark Dorward , Clare Johnson , Stuart G Wilkinson , Anna Geyer , Daniel M Giesel , Carla Baillie , Samantha Raggett , Hannah Leech , Rachel Toth , Nicola Goodman , Kathleen C Keough , Abigail L Lind , Auteur inconnu , Reyna J Klesh , Kafi R Hemphill , Jared Carlson-Stevermer , Jennifer Oki , Kevin Holden , Travis Maures , Katherine S Pollard , Andrej Sali , David A Agard , Yifan Cheng , James S Fraser , Adam Frost , Natalia Jura , Tanja Kortemme , Aashish Manglik , Daniel R Southworth , Robert M Stroud , Dario R Alessi , Paul Davies , Matthew B Frieman , Trey Ideker , Carmen Abate , Nolwenn Jouvenet , Georg Kochs , Brian Shoichet , Melanie Ott , Massimo Palmarini , Kevan M Shokat , Adolfo García-Sastre , Jeremy A Rassen , Robert Grosse , Oren S Rosenberg , Kliment A Verba , Christopher F Basler , Marco Vignuzzi , Andrew A Peden , Pedro Beltrao , Nevan J Krogan

CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.

Research square

Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia.

Cell

Avec: Daniel Asarnow , Bei Wang , Wen-Hsin Lee , Yuanyu Hu , Ching-Wen Huang , Bryan Faust , Patricia Miang Lon Ng , Eve Zi Xian Ngoh , Markus Bohn , David Bulkley , Andrés Pizzorno , Beatrice Ary , Hwee Ching Tan , Chia Yin Lee , Rabiatul Adawiyah Minhat , Olivier Terrier , Mun Kuen Soh , Frannie Jiuyi Teo , Yvonne Yee Chin Yeap , Shirley Gek Kheng Seah , Conrad En Zuo Chan , Emily Connelly , Nicholas J Young , Sebastian Maurer-Stroh , Laurent Renia , Brendon John Hanson , Manuel Rosa-Calatrava , Aashish Manglik , Yifan Cheng , Charles S Craik , Cheng-I Wang

Spike deep mutational scanning helps predict success of SARS-CoV-2 clades.

Nature

Avec: Bernadeta Dadonaite , Jack Brown , Teagan E McMahon , Ariana G Farrell , Marlin D Figgins , Daniel Asarnow , Cameron Stewart , Jimin Lee , Jenni Logue , Trevor Bedford , Ben Murrell , Helen Y Chu , David Veesler , Jesse D Bloom

A systematic search for RNA structural switches across the human transcriptome.

Nature methods

Avec: Matvei Khoroshkin , Daniel Asarnow , Shaopu Zhou , Albertas Navickas , Aidan Winters , Jackson Goudreau , Simon K Zhou , Johnny Yu , Christina Palka , Lisa Fish , Ashir Borah , Kian Yousefi , Christopher Carpenter , K Mark Ansel , Yifan Cheng , Luke A Gilbert , Hani Goodarzi

A pan-variant miniprotein inhibitor protects against SARS-CoV-2 variants.

bioRxiv : the preprint server for biology

Avec: Jimin Lee , James Brett Case , Rashmi Ravichandran , Daniel Asarnow , M Alejandra Tortorici , Jack T Brown , Shilpa Sanapala , Lauren Carter , David Baker , Michael S Diamond , David Veesler

Réseau de co-auteurs

Yifan Cheng 8 collaborations

David Veesler 6 collaborations

Jimin Lee 4 collaborations

Cameron Stewart 4 collaborations

Meghna Gupta 4 collaborations

Melody G Campbell 4 collaborations

Zanlin Yu 4 collaborations

None None 4 collaborations

Aashish Manglik 4 collaborations

Young-Jun Park 3 collaborations

Davide Corti 3 collaborations

Caleigh M Azumaya 3 collaborations

Michelle Moritz 3 collaborations

Sergei Pourmal 3 collaborations

Amy Diallo 3 collaborations

Gregory E Merz 3 collaborations

Gwendolyn Jang 3 collaborations

Mehdi Bouhaddou 3 collaborations

Axel F Brilot 3 collaborations

Devan Diwanji 3 collaborations

Nadia Herrera 3 collaborations

Huong T Kratochvil 3 collaborations

Victor L Lam 3 collaborations

Fei Li 3 collaborations

Yang Li 3 collaborations

Henry C Nguyen 3 collaborations

Carlos Nowotny 3 collaborations

Tristan W Owens 3 collaborations

Jessica K Peters 3 collaborations

Alexandrea N Rizo 3 collaborations

Ursula Schulze-Gahmen 3 collaborations

Amber M Smith 3 collaborations

Iris D Young 3 collaborations

Christian Billesbølle 3 collaborations

Jen Chen 3 collaborations

Un Seng Chio 3 collaborations

Miles Sasha Dickinson 3 collaborations

Loan Doan 3 collaborations

Mingliang Jin 3 collaborations

Kate Kim 3 collaborations

Junrui Li 3 collaborations

Yen-Li Li 3 collaborations

Yanxin Liu 3 collaborations

Megan Lo 3 collaborations

Kyle E Lopez 3 collaborations

Frank R Moss 3 collaborations

Komal Ishwar Pawar 3 collaborations

Thomas H Pospiech 3 collaborations

Cristina Puchades 3 collaborations

Maliheh Safari 3 collaborations

Kaitlin Schaefer 3 collaborations

Ming Sun 3 collaborations

Aye C Thwin 3 collaborations

Erron W Titus 3 collaborations

Raphael Trenker 3 collaborations

Eric Tse 3 collaborations

Tsz Kin Martin Tsui 3 collaborations

Feng Wang 3 collaborations

Kaihua Zhang 3 collaborations

Yang Zhang 3 collaborations

Jianhua Zhao 3 collaborations

Fengbo Zhou 3 collaborations

Yuan Zhou 3 collaborations

David A Agard 3 collaborations

James S Fraser 3 collaborations

Natalia Jura 3 collaborations

Tanja Kortemme 3 collaborations

Daniel R Southworth 3 collaborations

Robert M Stroud 3 collaborations

Danielle L Swaney 3 collaborations

Nevan J Krogan 3 collaborations

Adam Frost 3 collaborations

Oren S Rosenberg 3 collaborations

Kliment A Verba 3 collaborations

Elizabeth M Leaf 2 collaborations

John M Powers 2 collaborations

Catherine Treichel 2 collaborations

Ralph Baric 2 collaborations

Neil P King 2 collaborations

Bernadeta Dadonaite 2 collaborations

Jack Brown 2 collaborations

Teagan E McMahon 2 collaborations

Ariana G Farrell 2 collaborations

Jenni Logue 2 collaborations

Ben Murrell 2 collaborations

Helen Y Chu 2 collaborations

Jesse D Bloom 2 collaborations

Andrea Fossati 2 collaborations

Evelyn Hernandez 2 collaborations

Kuei-Ho Chen 2 collaborations

Edmond Linossi 2 collaborations

Jocelyne Lopez 2 collaborations

Adamo Mancino 2 collaborations

Michael D Paul 2 collaborations

Adrian Pelin 2 collaborations

Soumya Govinda Remesh 2 collaborations

Mariano C Tabios 2 collaborations

Lorena Zuliani-Alvarez 2 collaborations

Jack T Brown 2 collaborations

M Alejandra Tortorici 2 collaborations

Kaitlin R Sprouse 2 collaborations

Bryan Faust 2 collaborations

William R Arnold 1 collaboration

Alexandra Schaefer 1 collaboration

Vada A Becker 1 collaboration

Daija Bobe 1 collaboration

Charlie Dubbledam 1 collaboration

Jake D Johnston 1 collaboration

Mykhailo Kopylov 1 collaboration

Nathalie R Lavoie 1 collaboration

Qiuye Li 1 collaboration

Jacob M Mattingly 1 collaboration

Joshua H Mendez 1 collaboration

Mohammadreza Paraan 1 collaboration

Jack Turner 1 collaboration

Viraj Upadhye 1 collaboration

Richard M Walsh 1 collaboration

Edward T Eng 1 collaboration

Eugene Palovcak 1 collaboration

Shangyu Dang 1 collaboration

Mark K van Goor 1 collaboration

YongQiang Wang 1 collaboration

David Julius 1 collaboration

Jenny van der Wijst 1 collaboration

Megi Rexhepaj 1 collaboration

Lisa Perruzza 1 collaboration

Matthew McCallum 1 collaboration

Katja Culap 1 collaboration

Christian Saliba 1 collaboration

Giada Leoni 1 collaboration

Alessio Balmeli 1 collaboration

Courtney Yoshiyama 1 collaboration

Miles S Dickinson 1 collaboration

Joel Quispe 1 collaboration

Ashley L Taylor 1 collaboration

Tyler N Starr 1 collaboration

Fabio Begnini 1 collaboration

Alexandra Schäfer 1 collaboration

David E Gordon 1 collaboration

Joseph Hiatt 1 collaboration

Veronica V Rezelj 1 collaboration

Svenja Ulferts 1 collaboration

Hannes Braberg 1 collaboration

Alexander S Jureka 1 collaboration

Kirsten Obernier 1 collaboration

Jeffrey Z Guo 1 collaboration

Jyoti Batra 1 collaboration

Robyn M Kaake 1 collaboration

Andrew R Weckstein 1 collaboration

Merve Cakir 1 collaboration

Margaret Soucheray 1 collaboration

Michael McGregor 1 collaboration

Zeynep Cakir 1 collaboration

Matthew J O'Meara 1 collaboration

Tia A Tummino 1 collaboration

Ziyang Zhang 1 collaboration

Helene Foussard 1 collaboration

Ajda Rojc 1 collaboration

Dmitry Kuchenov 1 collaboration

Ruth Hüttenhain 1 collaboration

Jiewei Xu 1 collaboration

Manon Eckhardt 1 collaboration

Jacqueline M Fabius 1 collaboration

Manisha Ummadi 1 collaboration

Beril Tutuncuoglu 1 collaboration

Ujjwal Rathore 1 collaboration

Maya Modak 1 collaboration

Paige Haas 1 collaboration

Kelsey M Haas 1 collaboration

Zun Zar Chi Naing 1 collaboration

Ernst H Pulido 1 collaboration

Ying Shi 1 collaboration

Inigo Barrio-Hernandez 1 collaboration

Danish Memon 1 collaboration

Eirini Petsalaki 1 collaboration

Alistair Dunham 1 collaboration

Miguel Correa Marrero 1 collaboration

David Burke 1 collaboration

Cassandra Koh 1 collaboration

Thomas Vallet 1 collaboration

Jesus A Silvas 1 collaboration

Nick Hoppe 1 collaboration

Justin Biel 1 collaboration

Alisa Bowen 1 collaboration

Julian R Braxton 1 collaboration

Cynthia M Chio 1 collaboration

Ishan Deshpande 1 collaboration

Sebastian Flores 1 collaboration

Xi Liu 1 collaboration

Arthur A Melo 1 collaboration

Phuong Nguyen 1 collaboration

Joana Paulino 1 collaboration

Smriti Sangwan 1 collaboration

Paul V Thomas 1 collaboration

Natalie Whitis 1 collaboration

Daniel Saltzberg 1 collaboration

Anthony J Hodder 1 collaboration

Amber S Shun-Shion 1 collaboration

Daniel M Williams 1 collaboration

Kris M White 1 collaboration

Romel Rosales 1 collaboration

Thomas Kehrer 1 collaboration

Lisa Miorin 1 collaboration

Elena Moreno 1 collaboration

Arvind H Patel 1 collaboration

Suzannah Rihn 1 collaboration

Mir M Khalid 1 collaboration

Albert Vallejo-Gracia 1 collaboration

Parinaz Fozouni 1 collaboration

Camille R Simoneau 1 collaboration

Theodore L Roth 1 collaboration

David Wu 1 collaboration

Mohd Anisul Karim 1 collaboration

Maya Ghoussaini 1 collaboration

Ian Dunham 1 collaboration

Francesco Berardi 1 collaboration

Sebastian Weigang 1 collaboration

Maxime Chazal 1 collaboration

Jisoo Park 1 collaboration

James Logue 1 collaboration

Marisa McGrath 1 collaboration

Stuart Weston 1 collaboration

Robert Haupt 1 collaboration

C James Hastie 1 collaboration

Matthew Elliott 1 collaboration

Fiona Brown 1 collaboration

Kerry A Burness 1 collaboration

Elaine Reid 1 collaboration

Mark Dorward 1 collaboration

Clare Johnson 1 collaboration

Stuart G Wilkinson 1 collaboration

Anna Geyer 1 collaboration

Daniel M Giesel 1 collaboration

Carla Baillie 1 collaboration

Samantha Raggett 1 collaboration

Hannah Leech 1 collaboration

Rachel Toth 1 collaboration

Nicola Goodman 1 collaboration

Kathleen C Keough 1 collaboration

Abigail L Lind 1 collaboration

Reyna J Klesh 1 collaboration

Kafi R Hemphill 1 collaboration

Jared Carlson-Stevermer 1 collaboration

Jennifer Oki 1 collaboration

Kevin Holden 1 collaboration

Travis Maures 1 collaboration

Katherine S Pollard 1 collaboration

Andrej Sali 1 collaboration

Dario R Alessi 1 collaboration

Paul Davies 1 collaboration

Matthew B Frieman 1 collaboration

Trey Ideker 1 collaboration

Carmen Abate 1 collaboration

Nolwenn Jouvenet 1 collaboration

Georg Kochs 1 collaboration

Brian Shoichet 1 collaboration

Melanie Ott 1 collaboration

Massimo Palmarini 1 collaboration

Kevan M Shokat 1 collaboration

Adolfo García-Sastre 1 collaboration

Jeremy A Rassen 1 collaboration

Robert Grosse 1 collaboration

Christopher F Basler 1 collaboration

Marco Vignuzzi 1 collaboration

Andrew A Peden 1 collaboration

Pedro Beltrao 1 collaboration

Bei Wang 1 collaboration

Wen-Hsin Lee 1 collaboration

Yuanyu Hu 1 collaboration

Ching-Wen Huang 1 collaboration

Patricia Miang Lon Ng 1 collaboration

Eve Zi Xian Ngoh 1 collaboration

Markus Bohn 1 collaboration

David Bulkley 1 collaboration

Andrés Pizzorno 1 collaboration

Beatrice Ary 1 collaboration

Hwee Ching Tan 1 collaboration

Chia Yin Lee 1 collaboration

Rabiatul Adawiyah Minhat 1 collaboration

Olivier Terrier 1 collaboration

Mun Kuen Soh 1 collaboration

Frannie Jiuyi Teo 1 collaboration

Yvonne Yee Chin Yeap 1 collaboration

Shirley Gek Kheng Seah 1 collaboration

Conrad En Zuo Chan 1 collaboration

Emily Connelly 1 collaboration

Nicholas J Young 1 collaboration

Sebastian Maurer-Stroh 1 collaboration

Laurent Renia 1 collaboration

Brendon John Hanson 1 collaboration

Manuel Rosa-Calatrava 1 collaboration

Charles S Craik 1 collaboration

Cheng-I Wang 1 collaboration

Marlin D Figgins 1 collaboration

Trevor Bedford 1 collaboration

Matvei Khoroshkin 1 collaboration

Shaopu Zhou 1 collaboration

Albertas Navickas 1 collaboration

Aidan Winters 1 collaboration

Jackson Goudreau 1 collaboration

Simon K Zhou 1 collaboration

Johnny Yu 1 collaboration

Christina Palka 1 collaboration

Lisa Fish 1 collaboration

Ashir Borah 1 collaboration

Kian Yousefi 1 collaboration

Christopher Carpenter 1 collaboration

K Mark Ansel 1 collaboration

Luke A Gilbert 1 collaboration

Hani Goodarzi 1 collaboration

James Brett Case 1 collaboration

Rashmi Ravichandran 1 collaboration

Shilpa Sanapala 1 collaboration

Lauren Carter 1 collaboration

David Baker 1 collaboration

Michael S Diamond 1 collaboration