Darya Stepanenko

Affiliations

Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, United States.
Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York 11794, United States.

Publications (5)

Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket.

Journal of the American Chemical Society

Avec: Lucy Fallon , Kellon A A Belfon , Lauren Raguette , Yuzhang Wang , Darya Stepanenko , Abbigayle Cuomo , Jose Guerra , Stephanie Budhan , Sarah Varghese , Christopher P Corbo , Robert C Rizzo , Carlos Simmerling

Search and Localization Dynamics of the CRISPR-Cas9 System.

Physical review letters

Avec: Qiao Lu , Deepak Bhat , Darya Stepanenko , Simone Pigolotti

Assessing pH-Dependent Conformational Changes in the Fusion Peptide Proximal Region of the SARS-CoV-2 Spike Glycoprotein.

Viruses

Avec: Darya Stepanenko , Yuzhang Wang , Carlos Simmerling

MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction.

bioRxiv : the preprint server for biology

Avec: Ernest Glukhov , Dmytro Kalitin , Darya Stepanenko , Yimin Zhu , Thu Nguen , George Jones , Carlos Simmerling , Julie C Mitchell , Sandor Vajda , Ken A Dill , Dzmitry Padhorny , Dima Kozakov

Naturally safe: Cellular noise for document security.

Journal of biophotonics

Avec: Danica Pavlović , Mihailo D Rabasović , Aleksandar J Krmpot , Vladimir Lazović , Srećko Čurčić , Dejan V Stojanović , Branislav Jelenković , Wang Zhang , Di Zhang , Nenad Vukmirović , Dimitrije Stepanenko , Branko Kolarić , Dejan V Pantelić

Réseau de co-auteurs

Carlos Simmerling 3 collaborations

Yuzhang Wang 2 collaborations

Lucy Fallon 1 collaboration

Kellon A A Belfon 1 collaboration

Lauren Raguette 1 collaboration

Abbigayle Cuomo 1 collaboration

Jose Guerra 1 collaboration

Stephanie Budhan 1 collaboration

Sarah Varghese 1 collaboration

Christopher P Corbo 1 collaboration

Robert C Rizzo 1 collaboration

Qiao Lu 1 collaboration

Deepak Bhat 1 collaboration

Simone Pigolotti 1 collaboration

Ernest Glukhov 1 collaboration

Dmytro Kalitin 1 collaboration

Yimin Zhu 1 collaboration

Thu Nguen 1 collaboration

George Jones 1 collaboration

Julie C Mitchell 1 collaboration

Sandor Vajda 1 collaboration

Ken A Dill 1 collaboration

Dzmitry Padhorny 1 collaboration

Dima Kozakov 1 collaboration

Danica Pavlović 1 collaboration

Mihailo D Rabasović 1 collaboration

Aleksandar J Krmpot 1 collaboration

Vladimir Lazović 1 collaboration

Srećko Čurčić 1 collaboration

Dejan V Stojanović 1 collaboration

Branislav Jelenković 1 collaboration

Wang Zhang 1 collaboration

Di Zhang 1 collaboration

Nenad Vukmirović 1 collaboration

Dimitrije Stepanenko 1 collaboration

Branko Kolarić 1 collaboration

Dejan V Pantelić 1 collaboration