Simone Pigolotti

Affiliations

Okinawa Institute of Science & Technology Graduate University, Tancha, Onna-son, Okinawa, Japan.

Publications (18)

Enhanced Mutation Rate, Relaxed Selection, and the "Domino Effect" are associated with Gene Loss in Blattabacterium, A Cockroach Endosymbiont.

Molecular biology and evolution

Avec: Yukihiro Kinjo , Nathan Lo , Paula Villa Martín , Gaku Tokuda , Simone Pigolotti , Thomas Bourguignon

Optimization and Fabrication of Multi-Level Microchannels for Long-Term Imaging of Bacterial Growth and Expansion.

Micromachines

Avec: Hsieh-Fu Tsai , Daniel W Carlson , Anzhelika Koldaeva , Simone Pigolotti , Amy Q Shen

Error-suppression mechanism of PCR by blocker strands.

Biophysical journal

Avec: Hiroyuki Aoyanagi , Simone Pigolotti , Shinji Ono , Shoichi Toyabe

Genome replication in asynchronously growing microbial populations.

PLoS computational biology

Avec: Florian G Pflug , Deepak Bhat , Simone Pigolotti

Hyperaccurate currents in stochastic thermodynamics.

Physical review. E

Avec: Daniel Maria Busiello , Simone Pigolotti

Bet-hedging strategies in expanding populations.

PLoS computational biology

Avec: Paula Villa Martín , Miguel A Muñoz , Simone Pigolotti

Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Xingbo Yang , Matthias Heinemann , Jonathon Howard , Greg Huber , Srividya Iyer-Biswas , Guillaume Le Treut , Michael Lynch , Kristi L Montooth , Daniel J Needleman , Simone Pigolotti , Jonathan Rodenfels , Pierre Ronceray , Sadasivan Shankar , Iman Tavassoly , Shashi Thutupalli , Denis V Titov , Jin Wang , Peter J Foster

Speed variations of bacterial replisomes.

eLife

Avec: Deepak Bhat , Samuel Hauf , Charles Plessy , Yohei Yokobayashi , Simone Pigolotti

Error-Speed Correlations in Biopolymer Synthesis.

Physical review letters

Avec: Davide Chiuchiú , Yuhai Tu , Simone Pigolotti

Generalized Euler-Lotka equation for correlated cell divisions.

Physical review. E

Avec: Simone Pigolotti

Coalescent dynamics of planktonic communities.

Physical review. E

Avec: Paula Villa Martín , Anzhelika Koldaeva , Simone Pigolotti

Blocking uncertain mispriming errors of PCR.

Biophysical journal

Avec: Takumi Takahashi , Hiroyuki Aoyanagi , Simone Pigolotti , Shoichi Toyabe

Assembly of heteropolymers via a network of reaction coordinates.

Physical review. E

Avec: Davide Chiuchiù , James Ferrare , Simone Pigolotti

Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes.

Current biology : CB

Avec: Thomas Bourguignon , Yukihiro Kinjo , Paula Villa-Martín , Nicholas V Coleman , Qian Tang , Daej A Arab , Zongqing Wang , Gaku Tokuda , Yuichi Hongoh , Moriya Ohkuma , Simon Y W Ho , Simone Pigolotti , Nathan Lo

Ocean currents promote rare species diversity in protists.

Science advances

Avec: Paula Villa Martín , Aleš Buček , Thomas Bourguignon , Simone Pigolotti

Search and Localization Dynamics of the CRISPR-Cas9 System.

Physical review letters

Avec: Qiao Lu , Deepak Bhat , Darya Stepanenko , Simone Pigolotti

Population genetics in microchannels.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Anzhelika Koldaeva , Hsieh-Fu Tsai , Amy Q Shen , Simone Pigolotti

Thermodynamic bounds on time-reversal asymmetry.

Physical review. E

Avec: Shiling Liang , Simone Pigolotti

Réseau de co-auteurs

Paula Villa Martín 4 collaborations

Thomas Bourguignon 3 collaborations

Anzhelika Koldaeva 3 collaborations

Deepak Bhat 3 collaborations

Yukihiro Kinjo 2 collaborations

Nathan Lo 2 collaborations

Gaku Tokuda 2 collaborations

Hsieh-Fu Tsai 2 collaborations

Amy Q Shen 2 collaborations

Hiroyuki Aoyanagi 2 collaborations

Shoichi Toyabe 2 collaborations

Daniel W Carlson 1 collaboration

Shinji Ono 1 collaboration

Florian G Pflug 1 collaboration

Daniel Maria Busiello 1 collaboration

Miguel A Muñoz 1 collaboration

Xingbo Yang 1 collaboration

Matthias Heinemann 1 collaboration

Jonathon Howard 1 collaboration

Greg Huber 1 collaboration

Srividya Iyer-Biswas 1 collaboration

Guillaume Le Treut 1 collaboration

Michael Lynch 1 collaboration

Kristi L Montooth 1 collaboration

Daniel J Needleman 1 collaboration

Jonathan Rodenfels 1 collaboration

Pierre Ronceray 1 collaboration

Sadasivan Shankar 1 collaboration

Iman Tavassoly 1 collaboration

Shashi Thutupalli 1 collaboration

Denis V Titov 1 collaboration

Jin Wang 1 collaboration

Peter J Foster 1 collaboration

Samuel Hauf 1 collaboration

Charles Plessy 1 collaboration

Yohei Yokobayashi 1 collaboration

Davide Chiuchiú 1 collaboration

Yuhai Tu 1 collaboration

Takumi Takahashi 1 collaboration

Davide Chiuchiù 1 collaboration

James Ferrare 1 collaboration

Paula Villa-Martín 1 collaboration

Nicholas V Coleman 1 collaboration

Qian Tang 1 collaboration

Daej A Arab 1 collaboration

Zongqing Wang 1 collaboration

Yuichi Hongoh 1 collaboration

Moriya Ohkuma 1 collaboration

Simon Y W Ho 1 collaboration

Aleš Buček 1 collaboration

Qiao Lu 1 collaboration

Darya Stepanenko 1 collaboration

Shiling Liang 1 collaboration