Daudi Jjingo

Affiliations

Makerere University, College of Computing and Information Sciences, Department of Computer Science, Kampala, Uganda.
African Center of Excellence in Bioinformatics and Data Science, Infectious Diseases Institute, Kampala, Uganda.

Publications (21)

Sputum Microbiome and Chronic Obstructive Pulmonary Disease in a Rural Ugandan Cohort of Well-Controlled HIV Infection.

Microbiology spectrum

Avec: Alex Kayongo , Theda Ulrike Patricia Bartolomaeus , Till Birkner , Lajos Markó , Ulrike Löber , Edgar Kigozi , Carolyne Atugonza , Richard Munana , Denis Mawanda , Rogers Sekibira , Esther Uwimaana , Patricia Alupo , Robert Kalyesubula , Felix Knauf , Trishul Siddharthan , Bernard S Bagaya , David P Kateete , Moses L Joloba , Nelson K Sewankambo , Daudi Jjingo , Bruce Kirenga , William Checkley , Sofia K Forslund

A deep population reference panel of tandem repeat variation.

bioRxiv : the preprint server for biology

Avec: Helyaneh Ziaei Jam , Yang Li , Ross DeVito , Nima Mousavi , Nichole Ma , Ibra Lujumba , Yagoub Adam , Mikhail Maksimov , Bonnie Huang , Egor Dolzhenko , Yunjiang Qiu , Fredrick Elishama Kakembo , Habi Joseph , Blessing Onyido , Jumoke Adeyemi , Mehrdad Bakhtiari , Jonghun Park , Sara Javadzadeh , Daudi Jjingo , Ezekiel Adebiyi , Vineet Bafna , Melissa Gymrek

HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis.

Bioinformatics advances

Avec: Alfred Ssekagiri , Daudi Jjingo , Nicholas Bbosa , Daniel L Bugembe , David P Kateete , I King Jordan , Pontiano Kaleebu , Deogratius Ssemwanga

Feasibility of virtual reality based training for optimising COVID-19 case handling in Uganda.

BMC medical education

Avec: Paul Buyego , Elizabeth Katwesigye , Grace Kebirungi , Mike Nsubuga , Shirley Nakyejwe , Phillip Cruz , Meghan C McCarthy , Darrell Hurt , Andrew Kambugu , Joseph Walter Arinaitwe , Umaru Ssekabira , Daudi Jjingo

Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains.

Scientific reports

Avec: Grace Nabakooza , D Collins Owuor , Zaydah R de Laurent , Ronald Galiwango , Nicholas Owor , John T Kayiwa , Daudi Jjingo , Charles N Agoti , D James Nokes , David P Kateete , John M Kitayimbwa , Simon D W Frost , Julius J Lutwama

The Ugandan sickle Pan-African research consortium registry: design, development, and lessons.

BMC medical informatics and decision making

Avec: Mike Nsubuga , Henry Mutegeki , Daudi Jjingo , Deogratias Munube , Ruth Namazzi , Robert Opoka , Philip Kasirye , Grace Ndeezi , Heather Hume , Ezekiel Mupere , Grace Kebirungi , Isaac Birungi , Jack Morrice , Mario Jonas , Victoria Nembaware , Ambroise Wonkam , Julie Makani , Sarah Kiguli

Bioinformatics mentorship in a resource limited setting.

Briefings in bioinformatics

Avec: Daudi Jjingo , Gerald Mboowa , Ivan Sserwadda , Robert Kakaire , Davis Kiberu , Marion Amujal , Ronald Galiwango , David Kateete , Moses Joloba , Christopher C Whalen

Research ethics and artificial intelligence for global health: perspectives from the global forum on bioethics in research.

BMC medical ethics

Avec: James Shaw , Joseph Ali , Caesar A Atuire , Phaik Yeong Cheah , Armando Guio Español , Judy Wawira Gichoya , Adrienne Hunt , Daudi Jjingo , Katherine Littler , Daniela Paolotti , Effy Vayena

QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.

Bioinformatics advances

Avec: Alfred Ssekagiri , Daudi Jjingo , Ibra Lujumba , Nicholas Bbosa , Daniel L Bugembe , David P Kateete , I King Jordan , Pontiano Kaleebu , Deogratius Ssemwanga

A deep population reference panel of tandem repeat variation.

Nature communications

Genome-wide association analysis of cystatin-C kidney function in continental Africa.

EBioMedicine

Avec: Richard Mayanja , Tafadzwa Machipisa , Opeyemi Soremekun , Abram B Kamiza , Christopher Kintu , Allan Kalungi , Robert Kalyesubula , Obondo J Sande , Daudi Jjingo , June Fabian , Cassianne Robinson-Cohen , Nora Franceschini , Dorothea Nitsch , Moffat Nyirenda , Eleftheria Zeggini , Andrew P Morris , Tinashe Chikowore , Segun Fatumo

Virtual reality technology for surgical learning: qualitative outcomes of the first virtual reality training course for emergency and essential surgery delivered by a UK-Uganda partnership.

BMJ open quality

Avec: Helen Please , Karamveer Narang , William Bolton , Mike Nsubuga , Henry Luweesi , Ndiwalana Billy Richards , John Dalton , Catherine Tendo , Mansoor Khan , Daudi Jjingo , Mahmood F Bhutta , Dimitra Petrakaki , Jagtar Dhanda

Generalizability of machine learning in predicting antimicrobial resistance in E. coli: a multi-country case study in Africa.

BMC genomics

Avec: Mike Nsubuga , Ronald Galiwango , Daudi Jjingo , Gerald Mboowa

Digital tools for youth health promotion: principles, policies and practices in sub-Saharan Africa.

Health promotion international

Avec: Agata Ferretti , Kwame K Adjei , Joseph Ali , Caesar Atuire , Betrand Tambe Ayuk , Boladé Hamed Banougnin , Nezerith Cengiz , Judy Gichoya , Daudi Jjingo , Damian Omari Juma , Wiaan Kotze , Carleigh Krubiner , Katherine Littler , Melissa D McCradden , Keymanthri Moodley , Meshandren Naidoo , Gonasagrie Nair , Kingsley Obeng-Kyereh , Kedebone Oliver , Dimpho Ralefala , Elona Toska , Frederick M Wekesah , Jonty Wright , Effy Vayena

Molecular Dynamic Simulation Reveals Structure Differences in

Genes

Avec: Richard Mayanja , Christopher Kintu , Oudou Diabate , Opeyemi Soremekun , Olugbenga Oluseun Oluwagbemi , Mamadou Wele , Robert Kalyesubula , Daudi Jjingo , Tinashe Chikowore , Segun Fatumo

The causal effects of lipid traits on kidney function in Africans: bidirectional and multivariable Mendelian-randomization study.

EBioMedicine

Avec: Christopher Kintu , Opeyemi Soremekun , Abram B Kamiza , Allan Kalungi , Richard Mayanja , Robert Kalyesubula , Bernard Bagaya S , Daudi Jjingo , June Fabian , Dipender Gill , Moffat Nyirenda , Dorothea Nitsch , Tinashe Chikowore , Segun Fatumo

Air pollution and mobility patterns in two Ugandan cities during COVID-19 mobility restrictions suggest the validity of air quality data as a measure for human mobility.

Environmental science and pollution research international

Avec: Ronald Galiwango , Engineer Bainomugisha , Florence Kivunike , David Patrick Kateete , Daudi Jjingo

Meta-analysis of African ancestry genome-wide association studies identified novel locus and validates multiple loci associated with kidney function.

BMC genomics

Avec: Christopher Kintu , Opeyemi Soremekun , Tafadzwa Machipisa , Richard Mayanja , Robert Kalyesubula , Bernard S Bagaya , Daudi Jjingo , Tinashe Chikowore , Segun Fatumo

African Centers of Excellence in Bioinformatics and Data Intensive Science: Building Capacity for Enhancing Data Intensive Infectious Diseases Research in Africa.

Journal of infectious diseases & microbiology

Avec: Maria Y Giovanni , Christopher Whalen , Darrell E Hurt , Latrice Ware-Allen , Karlynn Noble , Meghan McCarthy , Mariam Quinones , Phillip Cruz , Daudi Jjingo , Mamadou Wele , Doumbia Seydou , Michael Tartakovsky

Designing and delivering bioinformatics project-based learning in East Africa.

BMC bioinformatics

Avec: Caleb K Kibet , Jean-Baka Domelevo Entfellner , Daudi Jjingo , Etienne Pierre de Villiers , Santie de Villiers , Karen Wambui , Sam Kinyanjui , Daniel Masiga

A unified Foot and Mouth Disease dataset for Uganda: evaluating machine learning predictive performance degradation under varying distributions.

Frontiers in artificial intelligence

Avec: Geofrey Kapalaga , Florence N Kivunike , Susan Kerfua , Daudi Jjingo , Savino Biryomumaisho , Justus Rutaisire , Paul Ssajjakambwe , Swidiq Mugerwa , Yusuf Kiwala

Réseau de co-auteurs

Robert Kalyesubula 5 collaborations

David P Kateete 4 collaborations

Mike Nsubuga 4 collaborations

Ronald Galiwango 4 collaborations

Richard Mayanja 4 collaborations

Opeyemi Soremekun 4 collaborations

Christopher Kintu 4 collaborations

Tinashe Chikowore 4 collaborations

Segun Fatumo 4 collaborations

Ibra Lujumba 3 collaborations

Bernard S Bagaya 2 collaborations

Helyaneh Ziaei Jam 2 collaborations

Yang Li 2 collaborations

Ross DeVito 2 collaborations

Nima Mousavi 2 collaborations

Nichole Ma 2 collaborations

Yagoub Adam 2 collaborations

Mikhail Maksimov 2 collaborations

Bonnie Huang 2 collaborations

Egor Dolzhenko 2 collaborations

Yunjiang Qiu 2 collaborations

Fredrick Elishama Kakembo 2 collaborations

Habi Joseph 2 collaborations

Blessing Onyido 2 collaborations

Jumoke Adeyemi 2 collaborations

Mehrdad Bakhtiari 2 collaborations

Jonghun Park 2 collaborations

Sara Javadzadeh 2 collaborations

Ezekiel Adebiyi 2 collaborations

Vineet Bafna 2 collaborations

Melissa Gymrek 2 collaborations

Alfred Ssekagiri 2 collaborations

Nicholas Bbosa 2 collaborations

Daniel L Bugembe 2 collaborations

I King Jordan 2 collaborations

Pontiano Kaleebu 2 collaborations

Deogratius Ssemwanga 2 collaborations

Grace Kebirungi 2 collaborations

Phillip Cruz 2 collaborations

Gerald Mboowa 2 collaborations

Joseph Ali 2 collaborations

Katherine Littler 2 collaborations

Effy Vayena 2 collaborations

Tafadzwa Machipisa 2 collaborations

Abram B Kamiza 2 collaborations

Allan Kalungi 2 collaborations

June Fabian 2 collaborations

Dorothea Nitsch 2 collaborations

Moffat Nyirenda 2 collaborations

Mamadou Wele 2 collaborations

Alex Kayongo 1 collaboration

Theda Ulrike Patricia Bartolomaeus 1 collaboration

Till Birkner 1 collaboration

Lajos Markó 1 collaboration

Ulrike Löber 1 collaboration

Edgar Kigozi 1 collaboration

Carolyne Atugonza 1 collaboration

Richard Munana 1 collaboration

Denis Mawanda 1 collaboration

Rogers Sekibira 1 collaboration

Esther Uwimaana 1 collaboration

Patricia Alupo 1 collaboration

Felix Knauf 1 collaboration

Trishul Siddharthan 1 collaboration

Moses L Joloba 1 collaboration

Nelson K Sewankambo 1 collaboration

Bruce Kirenga 1 collaboration

William Checkley 1 collaboration

Sofia K Forslund 1 collaboration

Paul Buyego 1 collaboration

Elizabeth Katwesigye 1 collaboration

Shirley Nakyejwe 1 collaboration

Meghan C McCarthy 1 collaboration

Darrell Hurt 1 collaboration

Andrew Kambugu 1 collaboration

Joseph Walter Arinaitwe 1 collaboration

Umaru Ssekabira 1 collaboration

Grace Nabakooza 1 collaboration

D Collins Owuor 1 collaboration

Zaydah R de Laurent 1 collaboration

Nicholas Owor 1 collaboration

John T Kayiwa 1 collaboration

Charles N Agoti 1 collaboration

D James Nokes 1 collaboration

John M Kitayimbwa 1 collaboration

Simon D W Frost 1 collaboration

Julius J Lutwama 1 collaboration

Henry Mutegeki 1 collaboration

Deogratias Munube 1 collaboration

Ruth Namazzi 1 collaboration

Robert Opoka 1 collaboration

Philip Kasirye 1 collaboration

Grace Ndeezi 1 collaboration

Heather Hume 1 collaboration

Ezekiel Mupere 1 collaboration

Isaac Birungi 1 collaboration

Jack Morrice 1 collaboration

Mario Jonas 1 collaboration

Victoria Nembaware 1 collaboration

Ambroise Wonkam 1 collaboration

Julie Makani 1 collaboration

Sarah Kiguli 1 collaboration

Ivan Sserwadda 1 collaboration

Robert Kakaire 1 collaboration

Davis Kiberu 1 collaboration

Marion Amujal 1 collaboration

David Kateete 1 collaboration

Moses Joloba 1 collaboration

Christopher C Whalen 1 collaboration

James Shaw 1 collaboration

Caesar A Atuire 1 collaboration

Phaik Yeong Cheah 1 collaboration

Armando Guio Español 1 collaboration

Judy Wawira Gichoya 1 collaboration

Adrienne Hunt 1 collaboration

Daniela Paolotti 1 collaboration

Obondo J Sande 1 collaboration

Cassianne Robinson-Cohen 1 collaboration

Nora Franceschini 1 collaboration

Eleftheria Zeggini 1 collaboration

Andrew P Morris 1 collaboration

Helen Please 1 collaboration

Karamveer Narang 1 collaboration

William Bolton 1 collaboration

Henry Luweesi 1 collaboration

Ndiwalana Billy Richards 1 collaboration

John Dalton 1 collaboration

Catherine Tendo 1 collaboration

Mansoor Khan 1 collaboration

Mahmood F Bhutta 1 collaboration

Dimitra Petrakaki 1 collaboration

Jagtar Dhanda 1 collaboration

Agata Ferretti 1 collaboration

Kwame K Adjei 1 collaboration

Caesar Atuire 1 collaboration

Betrand Tambe Ayuk 1 collaboration

Boladé Hamed Banougnin 1 collaboration

Nezerith Cengiz 1 collaboration

Judy Gichoya 1 collaboration

Damian Omari Juma 1 collaboration

Wiaan Kotze 1 collaboration

Carleigh Krubiner 1 collaboration

Melissa D McCradden 1 collaboration

Keymanthri Moodley 1 collaboration

Meshandren Naidoo 1 collaboration

Gonasagrie Nair 1 collaboration

Kingsley Obeng-Kyereh 1 collaboration

Kedebone Oliver 1 collaboration

Dimpho Ralefala 1 collaboration

Elona Toska 1 collaboration

Frederick M Wekesah 1 collaboration

Jonty Wright 1 collaboration

Oudou Diabate 1 collaboration

Olugbenga Oluseun Oluwagbemi 1 collaboration

Bernard Bagaya S 1 collaboration

Dipender Gill 1 collaboration

Engineer Bainomugisha 1 collaboration

Florence Kivunike 1 collaboration

David Patrick Kateete 1 collaboration

Maria Y Giovanni 1 collaboration

Christopher Whalen 1 collaboration

Darrell E Hurt 1 collaboration

Latrice Ware-Allen 1 collaboration

Karlynn Noble 1 collaboration

Meghan McCarthy 1 collaboration

Mariam Quinones 1 collaboration

Doumbia Seydou 1 collaboration

Michael Tartakovsky 1 collaboration

Caleb K Kibet 1 collaboration

Jean-Baka Domelevo Entfellner 1 collaboration

Etienne Pierre de Villiers 1 collaboration

Santie de Villiers 1 collaboration

Karen Wambui 1 collaboration

Sam Kinyanjui 1 collaboration

Daniel Masiga 1 collaboration

Geofrey Kapalaga 1 collaboration

Florence N Kivunike 1 collaboration

Susan Kerfua 1 collaboration

Savino Biryomumaisho 1 collaboration

Justus Rutaisire 1 collaboration

Paul Ssajjakambwe 1 collaboration

Swidiq Mugerwa 1 collaboration

Yusuf Kiwala 1 collaboration