David Dylus

Affiliations

Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.
Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.

Publications (10)

OMA standalone: orthology inference among public and custom genomes and transcriptomes.

Genome research

Avec: Adrian M Altenhoff , Jeremy Levy , Magdalena Zarowiecki , Bartłomiej Tomiczek , Alex Warwick Vesztrocy , Daniel A Dalquen , Steven Müller , Maximilian J Telford , Natasha M Glover , David Dylus , Christophe Dessimoz

NGS-Based

Frontiers in microbiology

Avec: David Dylus , Trestan Pillonel , Onya Opota , Daniel Wüthrich , Helena M B Seth-Smith , Adrian Egli , Stefano Leo , Vladimir Lazarevic , Jacques Schrenzel , Sacha Laurent , Claire Bertelli , Dominique S Blanc , Stefan Neuenschwander , Alban Ramette , Laurent Falquet , Frank Imkamp , Peter M Keller , Andre Kahles , Simone Oberhaensli , Valérie Barbié , Christophe Dessimoz , Gilbert Greub , Aitana Lebrand

How to build phylogenetic species trees with OMA.

F1000Research

Avec: David Dylus , Yannis Nevers , Adrian M Altenhoff , Antoine Gürtler , Christophe Dessimoz , Natasha M Glover

Read2Tree: scalable and accurate phylogenetic trees from raw reads.

bioRxiv : the preprint server for biology

Avec: David Dylus , Adrian Altenhoff , Sina Majidian , Fritz J Sedlazeck , Christophe Dessimoz

Human Th17- and IgG3-associated autoimmunity induced by a translocating gut pathobiont.

bioRxiv : the preprint server for biology

Avec: Konrad Gronke , Mytien Nguyen , Noemi Santamaria , Julia Schumacher , Yi Yang , Nicole Sonnert , Shana Leopold , Anjelica L Martin , Remy Hallet , Kirsten Richter , David A Schubert , Guillaume M Daniel , David Dylus , Marianne Forkel , Silvio Manfredo Vieira , Dorothee Schwinge , Christoph Schramm , Kara G Lassen , Luca Piali , Noah W Palm , Christoph Bieniossek , Martin A Kriegel

A novel antibiotic class targeting the lipopolysaccharide transporter.

Nature

Avec: Claudia Zampaloni , Patrizio Mattei , Konrad Bleicher , Lotte Winther , Claudia Thäte , Christian Bucher , Jean-Michel Adam , Alexander Alanine , Kurt E Amrein , Vadim Baidin , Christoph Bieniossek , Caterina Bissantz , Franziska Boess , Carina Cantrill , Thomas Clairfeuille , Fabian Dey , Patrick Di Giorgio , Pauline du Castel , David Dylus , Pawel Dzygiel , Antonio Felici , Fernando García-Alcalde , Andreas Haldimann , Matthew Leipner , Semen Leyn , Séverine Louvel , Pauline Misson , Andrei Osterman , Karanbir Pahil , Sébastien Rigo , Adrian Schäublin , Sebastian Scharf , Petra Schmitz , Theodor Stoll , Andrej Trauner , Sannah Zoffmann , Daniel Kahne , John A T Young , Michael A Lobritz , Kenneth A Bradley

The phylogenetic range of bacterial and viral pathogens of vertebrates.

Molecular ecology

Avec: Liam P Shaw , Alethea D Wang , David Dylus , Magda Meier , Grega Pogacnik , Christophe Dessimoz , François Balloux

New genome assembly of the barn owl (

Ecology and evolution

Avec: Anne-Lyse Ducrest , Samuel Neuenschwander , Emanuel Schmid-Siegert , Marco Pagni , Clément Train , David Dylus , Yannis Nevers , Alex Warwick Vesztrocy , Luis M San-Jose , Mélanie Dupasquier , Christophe Dessimoz , Ioannis Xenarios , Alexandre Roulin , Jérôme Goudet

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree.

Nature biotechnology

Avec: David Dylus , Adrian Altenhoff , Sina Majidian , Fritz J Sedlazeck , Christophe Dessimoz

The brittle star genome illuminates the genetic basis of animal appendage regeneration.

Nature ecology & evolution

Avec: Elise Parey , Olga Ortega-Martinez , Jérôme Delroisse , Laura Piovani , Anna Czarkwiani , David Dylus , Srishti Arya , Samuel Dupont , Michael Thorndyke , Tomas Larsson , Kerstin Johannesson , Katherine M Buckley , Pedro Martinez , Paola Oliveri , Ferdinand Marlétaz

Réseau de co-auteurs

Christophe Dessimoz 7 collaborations

Adrian M Altenhoff 2 collaborations

Alex Warwick Vesztrocy 2 collaborations

Natasha M Glover 2 collaborations

Yannis Nevers 2 collaborations

Adrian Altenhoff 2 collaborations

Sina Majidian 2 collaborations

Fritz J Sedlazeck 2 collaborations

Christoph Bieniossek 2 collaborations

Jeremy Levy 1 collaboration

Magdalena Zarowiecki 1 collaboration

Bartłomiej Tomiczek 1 collaboration

Daniel A Dalquen 1 collaboration

Steven Müller 1 collaboration

Maximilian J Telford 1 collaboration

Trestan Pillonel 1 collaboration

Onya Opota 1 collaboration

Daniel Wüthrich 1 collaboration

Helena M B Seth-Smith 1 collaboration

Adrian Egli 1 collaboration

Stefano Leo 1 collaboration

Vladimir Lazarevic 1 collaboration

Jacques Schrenzel 1 collaboration

Sacha Laurent 1 collaboration

Claire Bertelli 1 collaboration

Dominique S Blanc 1 collaboration

Stefan Neuenschwander 1 collaboration

Alban Ramette 1 collaboration

Laurent Falquet 1 collaboration

Frank Imkamp 1 collaboration

Peter M Keller 1 collaboration

Andre Kahles 1 collaboration

Simone Oberhaensli 1 collaboration

Valérie Barbié 1 collaboration

Gilbert Greub 1 collaboration

Aitana Lebrand 1 collaboration

Antoine Gürtler 1 collaboration

Konrad Gronke 1 collaboration

Mytien Nguyen 1 collaboration

Noemi Santamaria 1 collaboration

Julia Schumacher 1 collaboration

Yi Yang 1 collaboration

Nicole Sonnert 1 collaboration

Shana Leopold 1 collaboration

Anjelica L Martin 1 collaboration

Remy Hallet 1 collaboration

Kirsten Richter 1 collaboration

David A Schubert 1 collaboration

Guillaume M Daniel 1 collaboration

Marianne Forkel 1 collaboration

Silvio Manfredo Vieira 1 collaboration

Dorothee Schwinge 1 collaboration

Christoph Schramm 1 collaboration

Kara G Lassen 1 collaboration

Luca Piali 1 collaboration

Noah W Palm 1 collaboration

Martin A Kriegel 1 collaboration

Claudia Zampaloni 1 collaboration

Patrizio Mattei 1 collaboration

Konrad Bleicher 1 collaboration

Lotte Winther 1 collaboration

Claudia Thäte 1 collaboration

Christian Bucher 1 collaboration

Jean-Michel Adam 1 collaboration

Alexander Alanine 1 collaboration

Kurt E Amrein 1 collaboration

Vadim Baidin 1 collaboration

Caterina Bissantz 1 collaboration

Franziska Boess 1 collaboration

Carina Cantrill 1 collaboration

Thomas Clairfeuille 1 collaboration

Fabian Dey 1 collaboration

Patrick Di Giorgio 1 collaboration

Pauline du Castel 1 collaboration

Pawel Dzygiel 1 collaboration

Antonio Felici 1 collaboration

Fernando García-Alcalde 1 collaboration

Andreas Haldimann 1 collaboration

Matthew Leipner 1 collaboration

Semen Leyn 1 collaboration

Séverine Louvel 1 collaboration

Pauline Misson 1 collaboration

Andrei Osterman 1 collaboration

Karanbir Pahil 1 collaboration

Sébastien Rigo 1 collaboration

Adrian Schäublin 1 collaboration

Sebastian Scharf 1 collaboration

Petra Schmitz 1 collaboration

Theodor Stoll 1 collaboration

Andrej Trauner 1 collaboration

Sannah Zoffmann 1 collaboration

Daniel Kahne 1 collaboration

John A T Young 1 collaboration

Michael A Lobritz 1 collaboration

Kenneth A Bradley 1 collaboration

Liam P Shaw 1 collaboration

Alethea D Wang 1 collaboration

Magda Meier 1 collaboration

Grega Pogacnik 1 collaboration

François Balloux 1 collaboration

Anne-Lyse Ducrest 1 collaboration

Samuel Neuenschwander 1 collaboration

Emanuel Schmid-Siegert 1 collaboration

Marco Pagni 1 collaboration

Clément Train 1 collaboration

Luis M San-Jose 1 collaboration

Mélanie Dupasquier 1 collaboration

Ioannis Xenarios 1 collaboration

Alexandre Roulin 1 collaboration

Jérôme Goudet 1 collaboration

Elise Parey 1 collaboration

Olga Ortega-Martinez 1 collaboration

Jérôme Delroisse 1 collaboration

Laura Piovani 1 collaboration

Anna Czarkwiani 1 collaboration

Srishti Arya 1 collaboration

Samuel Dupont 1 collaboration

Michael Thorndyke 1 collaboration

Tomas Larsson 1 collaboration

Kerstin Johannesson 1 collaboration

Katherine M Buckley 1 collaboration

Pedro Martinez 1 collaboration

Paola Oliveri 1 collaboration

Ferdinand Marlétaz 1 collaboration