David Páez-Espino

Affiliations

Department of Energy, Joint Genome Institute, Berkeley, California, USA.
Mammoth Biosciences, Inc., South San Francisco, California, USA.

Publications (6)

Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale.

mSystems

Avec: Mengqi Sun , Yuanchao Zhan , David Marsan , David Páez-Espino , Lanlan Cai , Feng Chen

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.

Nature microbiology

Avec: Stephen Nayfach , David Páez-Espino , Lee Call , Soo Jen Low , Hila Sberro , Natalia N Ivanova , Amy D Proal , Michael A Fischbach , Ami S Bhatt , Philip Hugenholtz , Nikos C Kyrpides

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

Nucleic acids research

Avec: Simon Roux , David Páez-Espino , I-Min A Chen , Krishna Palaniappan , Anna Ratner , Ken Chu , T B K Reddy , Stephen Nayfach , Frederik Schulz , Lee Call , Russell Y Neches , Tanja Woyke , Natalia N Ivanova , Emiley A Eloe-Fadrosh , Nikos C Kyrpides

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community.

Microbiome

Avec: Pratibha Panwar , Michelle A Allen , Timothy J Williams , Alyce M Hancock , Sarah Brazendale , James Bevington , Simon Roux , David Páez-Espino , Stephen Nayfach , Maureen Berg , Frederik Schulz , I-Min A Chen , Marcel Huntemann , Nicole Shapiro , Nikos C Kyrpides , Tanja Woyke , Emiley A Eloe-Fadrosh , Ricardo Cavicchioli

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Nature biotechnology

Avec: Simon Roux , Evelien M Adriaenssens , Bas E Dutilh , Eugene V Koonin , Andrew M Kropinski , Mart Krupovic , Jens H Kuhn , Rob Lavigne , J Rodney Brister , Arvind Varsani , Clara Amid , Ramy K Aziz , Seth R Bordenstein , Peer Bork , Mya Breitbart , Guy R Cochrane , Rebecca A Daly , Christelle Desnues , Melissa B Duhaime , Joanne B Emerson , François Enault , Jed A Fuhrman , Pascal Hingamp , Philip Hugenholtz , Bonnie L Hurwitz , Natalia N Ivanova , Jessica M Labonté , Kyung-Bum Lee , Rex R Malmstrom , Manuel Martinez-Garcia , Ilene Karsch Mizrachi , Hiroyuki Ogata , David Páez-Espino , Marie-Agnès Petit , Catherine Putonti , Thomas Rattei , Alejandro Reyes , Francisco Rodriguez-Valera , Karyna Rosario , Lynn Schriml , Frederik Schulz , Grieg F Steward , Matthew B Sullivan , Shinichi Sunagawa , Curtis A Suttle , Ben Temperton , Susannah G Tringe , Rebecca Vega Thurber , Nicole S Webster , Katrine L Whiteson , Steven W Wilhelm , K Eric Wommack , Tanja Woyke , Kelly C Wrighton , Pelin Yilmaz , Takashi Yoshida , Mark J Young , Natalya Yutin , Lisa Zeigler Allen , Nikos C Kyrpides , Emiley A Eloe-Fadrosh

A Bifan Motif Shaped by ArsR1, ArsR2, and Their Cognate Promoters Frames Arsenic Tolerance of

Frontiers in microbiology

Avec: Gonzalo Durante-Rodríguez , David Páez-Espino , Víctor de Lorenzo

Réseau de co-auteurs

Nikos C Kyrpides 4 collaborations

Stephen Nayfach 3 collaborations

Natalia N Ivanova 3 collaborations

Simon Roux 3 collaborations

Frederik Schulz 3 collaborations

Tanja Woyke 3 collaborations

Emiley A Eloe-Fadrosh 3 collaborations

Lee Call 2 collaborations

Philip Hugenholtz 2 collaborations

I-Min A Chen 2 collaborations

Mengqi Sun 1 collaboration

Yuanchao Zhan 1 collaboration

David Marsan 1 collaboration

Lanlan Cai 1 collaboration

Feng Chen 1 collaboration

Soo Jen Low 1 collaboration

Hila Sberro 1 collaboration

Amy D Proal 1 collaboration

Michael A Fischbach 1 collaboration

Ami S Bhatt 1 collaboration

Krishna Palaniappan 1 collaboration

Anna Ratner 1 collaboration

Ken Chu 1 collaboration

T B K Reddy 1 collaboration

Russell Y Neches 1 collaboration

Pratibha Panwar 1 collaboration

Michelle A Allen 1 collaboration

Timothy J Williams 1 collaboration

Alyce M Hancock 1 collaboration

Sarah Brazendale 1 collaboration

James Bevington 1 collaboration

Maureen Berg 1 collaboration

Marcel Huntemann 1 collaboration

Nicole Shapiro 1 collaboration

Ricardo Cavicchioli 1 collaboration

Evelien M Adriaenssens 1 collaboration

Bas E Dutilh 1 collaboration

Eugene V Koonin 1 collaboration

Andrew M Kropinski 1 collaboration

Mart Krupovic 1 collaboration

Jens H Kuhn 1 collaboration

Rob Lavigne 1 collaboration

J Rodney Brister 1 collaboration

Arvind Varsani 1 collaboration

Clara Amid 1 collaboration

Ramy K Aziz 1 collaboration

Seth R Bordenstein 1 collaboration

Peer Bork 1 collaboration

Mya Breitbart 1 collaboration

Guy R Cochrane 1 collaboration

Rebecca A Daly 1 collaboration

Christelle Desnues 1 collaboration

Melissa B Duhaime 1 collaboration

Joanne B Emerson 1 collaboration

François Enault 1 collaboration

Jed A Fuhrman 1 collaboration

Pascal Hingamp 1 collaboration

Bonnie L Hurwitz 1 collaboration

Jessica M Labonté 1 collaboration

Kyung-Bum Lee 1 collaboration

Rex R Malmstrom 1 collaboration

Manuel Martinez-Garcia 1 collaboration

Ilene Karsch Mizrachi 1 collaboration

Hiroyuki Ogata 1 collaboration

Marie-Agnès Petit 1 collaboration

Catherine Putonti 1 collaboration

Thomas Rattei 1 collaboration

Alejandro Reyes 1 collaboration

Francisco Rodriguez-Valera 1 collaboration

Karyna Rosario 1 collaboration

Lynn Schriml 1 collaboration

Grieg F Steward 1 collaboration

Matthew B Sullivan 1 collaboration

Shinichi Sunagawa 1 collaboration

Curtis A Suttle 1 collaboration

Ben Temperton 1 collaboration

Susannah G Tringe 1 collaboration

Rebecca Vega Thurber 1 collaboration

Nicole S Webster 1 collaboration

Katrine L Whiteson 1 collaboration

Steven W Wilhelm 1 collaboration

K Eric Wommack 1 collaboration

Kelly C Wrighton 1 collaboration

Pelin Yilmaz 1 collaboration

Takashi Yoshida 1 collaboration

Mark J Young 1 collaboration

Natalya Yutin 1 collaboration

Lisa Zeigler Allen 1 collaboration

Gonzalo Durante-Rodríguez 1 collaboration

Víctor de Lorenzo 1 collaboration