Pascal Hingamp

Affiliations

Aix Marseille Université, Université de Toulon, IRD, CNRS, Mediterranean Institute of Oceanography (MIO) UM 110, Marseille, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, Paris, France.

ORCID: https://orcid.org/0000-0002-7463-2444

Publications (8)

The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms.

Molecular ecology resources

Avec: Caroline Vernette , Nicolas Henry , Julien Lecubin , Colomban de Vargas , Pascal Hingamp , Magali Lescot

Diversity and evolution of bacterial bioluminescence genes in the global ocean.

NAR genomics and bioinformatics

Avec: Thomas Vannier , Pascal Hingamp , Floriane Turrel , Lisa Tanet , Magali Lescot , Youri Timsit

The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes.

Nucleic acids research

Avec: Caroline Vernette , Julien Lecubin , Pablo Sánchez , Auteur inconnu , Shinichi Sunagawa , Tom O Delmont , Silvia G Acinas , Eric Pelletier , Pascal Hingamp , Magali Lescot

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome.

Cell

Avec: Guillem Salazar , Lucas Paoli , Adriana Alberti , Jaime Huerta-Cepas , Hans-Joachim Ruscheweyh , Miguelangel Cuenca , Christopher M Field , Luis Pedro Coelho , Corinne Cruaud , Stefan Engelen , Ann C Gregory , Karine Labadie , Claudie Marec , Eric Pelletier , Marta Royo-Llonch , Simon Roux , Pablo Sánchez , Hideya Uehara , Ahmed A Zayed , Georg Zeller , Margaux Carmichael , Céline Dimier , Joannie Ferland , Stefanie Kandels , Marc Picheral , Sergey Pisarev , Julie Poulain , Auteur inconnu , Silvia G Acinas , Marcel Babin , Peer Bork , Chris Bowler , Colomban de Vargas , Lionel Guidi , Pascal Hingamp , Daniele Iudicone , Lee Karp-Boss , Eric Karsenti , Hiroyuki Ogata , Stephane Pesant , Sabrina Speich , Matthew B Sullivan , Patrick Wincker , Shinichi Sunagawa

Microbial abundance, activity and population genomic profiling with mOTUs2.

Nature communications

Avec: Alessio Milanese , Daniel R Mende , Lucas Paoli , Guillem Salazar , Hans-Joachim Ruscheweyh , Miguelangel Cuenca , Pascal Hingamp , Renato Alves , Paul I Costea , Luis Pedro Coelho , Thomas S B Schmidt , Alexandre Almeida , Alex L Mitchell , Robert D Finn , Jaime Huerta-Cepas , Peer Bork , Georg Zeller , Shinichi Sunagawa

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Nature biotechnology

Avec: Simon Roux , Evelien M Adriaenssens , Bas E Dutilh , Eugene V Koonin , Andrew M Kropinski , Mart Krupovic , Jens H Kuhn , Rob Lavigne , J Rodney Brister , Arvind Varsani , Clara Amid , Ramy K Aziz , Seth R Bordenstein , Peer Bork , Mya Breitbart , Guy R Cochrane , Rebecca A Daly , Christelle Desnues , Melissa B Duhaime , Joanne B Emerson , François Enault , Jed A Fuhrman , Pascal Hingamp , Philip Hugenholtz , Bonnie L Hurwitz , Natalia N Ivanova , Jessica M Labonté , Kyung-Bum Lee , Rex R Malmstrom , Manuel Martinez-Garcia , Ilene Karsch Mizrachi , Hiroyuki Ogata , David Páez-Espino , Marie-Agnès Petit , Catherine Putonti , Thomas Rattei , Alejandro Reyes , Francisco Rodriguez-Valera , Karyna Rosario , Lynn Schriml , Frederik Schulz , Grieg F Steward , Matthew B Sullivan , Shinichi Sunagawa , Curtis A Suttle , Ben Temperton , Susannah G Tringe , Rebecca Vega Thurber , Nicole S Webster , Katrine L Whiteson , Steven W Wilhelm , K Eric Wommack , Tanja Woyke , Kelly C Wrighton , Pelin Yilmaz , Takashi Yoshida , Mark J Young , Natalya Yutin , Lisa Zeigler Allen , Nikos C Kyrpides , Emiley A Eloe-Fadrosh

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.

Communications biology

Avec: Silvia G Acinas , Pablo Sánchez , Guillem Salazar , Francisco M Cornejo-Castillo , Marta Sebastián , Ramiro Logares , Marta Royo-Llonch , Lucas Paoli , Shinichi Sunagawa , Pascal Hingamp , Hiroyuki Ogata , Gipsi Lima-Mendez , Simon Roux , José M González , Jesús M Arrieta , Intikhab S Alam , Allan Kamau , Chris Bowler , Jeroen Raes , Stéphane Pesant , Peer Bork , Susana Agustí , Takashi Gojobori , Dolors Vaqué , Matthew B Sullivan , Carlos Pedrós-Alió , Ramon Massana , Carlos M Duarte , Josep M Gasol

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.

Science (New York, N.Y.)

Avec: Ahmed A Zayed , James M Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo , Mohamed Mohssen , Funing Tian , Akbar Adjie Pratama , Benjamin Bolduc , Olivier Zablocki , Dylan Cronin , Lindsey Solden , Erwan Delage , Adriana Alberti , Jean-Marc Aury , Quentin Carradec , Corinne da Silva , Karine Labadie , Julie Poulain , Hans-Joachim Ruscheweyh , Guillem Salazar , Elan Shatoff , Auteur inconnu , Ralf Bundschuh , Kurt Fredrick , Laura S Kubatko , Samuel Chaffron , Alexander I Culley , Shinichi Sunagawa , Jens H Kuhn , Patrick Wincker , Matthew B Sullivan , Silvia G Acinas , Marcel Babin , Peer Bork , Emmanuel Boss , Chris Bowler , Guy Cochrane , Colomban de Vargas , Gabriel Gorsky , Lionel Guidi , Nigel Grimsley , Pascal Hingamp , Daniele Iudicone , Olivier Jaillon , Stefanie Kandels , Lee Karp-Boss , Eric Karsenti , Fabrice Not , Hiroyuki Ogata , Nicole Poulton , Stéphane Pesant , Christian Sardet , Sabrinia Speich , Lars Stemmann , Matthew B Sullivan , Shinichi Sungawa , Patrick Wincker

Réseau de co-auteurs

Shinichi Sunagawa 6 collaborations

Peer Bork 5 collaborations

Matthew B Sullivan 5 collaborations

Silvia G Acinas 4 collaborations

Guillem Salazar 4 collaborations

Hiroyuki Ogata 4 collaborations

Colomban de Vargas 3 collaborations

Magali Lescot 3 collaborations

Pablo Sánchez 3 collaborations

None None 3 collaborations

Eric Pelletier 3 collaborations

Lucas Paoli 3 collaborations

Hans-Joachim Ruscheweyh 3 collaborations

Simon Roux 3 collaborations

Chris Bowler 3 collaborations

Patrick Wincker 3 collaborations

Caroline Vernette 2 collaborations

Julien Lecubin 2 collaborations

Adriana Alberti 2 collaborations

Jaime Huerta-Cepas 2 collaborations

Miguelangel Cuenca 2 collaborations

Luis Pedro Coelho 2 collaborations

Karine Labadie 2 collaborations

Marta Royo-Llonch 2 collaborations

Ahmed A Zayed 2 collaborations

Georg Zeller 2 collaborations

Stefanie Kandels 2 collaborations

Julie Poulain 2 collaborations

Marcel Babin 2 collaborations

Lionel Guidi 2 collaborations

Daniele Iudicone 2 collaborations

Lee Karp-Boss 2 collaborations

Eric Karsenti 2 collaborations

Jens H Kuhn 2 collaborations

Stéphane Pesant 2 collaborations

Nicolas Henry 1 collaboration

Thomas Vannier 1 collaboration

Floriane Turrel 1 collaboration

Lisa Tanet 1 collaboration

Youri Timsit 1 collaboration

Tom O Delmont 1 collaboration

Christopher M Field 1 collaboration

Corinne Cruaud 1 collaboration

Stefan Engelen 1 collaboration

Ann C Gregory 1 collaboration

Claudie Marec 1 collaboration

Hideya Uehara 1 collaboration

Margaux Carmichael 1 collaboration

Céline Dimier 1 collaboration

Joannie Ferland 1 collaboration

Marc Picheral 1 collaboration

Sergey Pisarev 1 collaboration

Stephane Pesant 1 collaboration

Sabrina Speich 1 collaboration

Alessio Milanese 1 collaboration

Daniel R Mende 1 collaboration

Renato Alves 1 collaboration

Paul I Costea 1 collaboration

Thomas S B Schmidt 1 collaboration

Alexandre Almeida 1 collaboration

Alex L Mitchell 1 collaboration

Robert D Finn 1 collaboration

Evelien M Adriaenssens 1 collaboration

Bas E Dutilh 1 collaboration

Eugene V Koonin 1 collaboration

Andrew M Kropinski 1 collaboration

Mart Krupovic 1 collaboration

Rob Lavigne 1 collaboration

J Rodney Brister 1 collaboration

Arvind Varsani 1 collaboration

Clara Amid 1 collaboration

Ramy K Aziz 1 collaboration

Seth R Bordenstein 1 collaboration

Mya Breitbart 1 collaboration

Guy R Cochrane 1 collaboration

Rebecca A Daly 1 collaboration

Christelle Desnues 1 collaboration

Melissa B Duhaime 1 collaboration

Joanne B Emerson 1 collaboration

François Enault 1 collaboration

Jed A Fuhrman 1 collaboration

Philip Hugenholtz 1 collaboration

Bonnie L Hurwitz 1 collaboration

Natalia N Ivanova 1 collaboration

Jessica M Labonté 1 collaboration

Kyung-Bum Lee 1 collaboration

Rex R Malmstrom 1 collaboration

Manuel Martinez-Garcia 1 collaboration

Ilene Karsch Mizrachi 1 collaboration

David Páez-Espino 1 collaboration

Marie-Agnès Petit 1 collaboration

Catherine Putonti 1 collaboration

Thomas Rattei 1 collaboration

Alejandro Reyes 1 collaboration

Francisco Rodriguez-Valera 1 collaboration

Karyna Rosario 1 collaboration

Lynn Schriml 1 collaboration

Frederik Schulz 1 collaboration

Grieg F Steward 1 collaboration

Curtis A Suttle 1 collaboration

Ben Temperton 1 collaboration

Susannah G Tringe 1 collaboration

Rebecca Vega Thurber 1 collaboration

Nicole S Webster 1 collaboration

Katrine L Whiteson 1 collaboration

Steven W Wilhelm 1 collaboration

K Eric Wommack 1 collaboration

Tanja Woyke 1 collaboration

Kelly C Wrighton 1 collaboration

Pelin Yilmaz 1 collaboration

Takashi Yoshida 1 collaboration

Mark J Young 1 collaboration

Natalya Yutin 1 collaboration

Lisa Zeigler Allen 1 collaboration

Nikos C Kyrpides 1 collaboration

Emiley A Eloe-Fadrosh 1 collaboration

Francisco M Cornejo-Castillo 1 collaboration

Marta Sebastián 1 collaboration

Ramiro Logares 1 collaboration

Gipsi Lima-Mendez 1 collaboration

José M González 1 collaboration

Jesús M Arrieta 1 collaboration

Intikhab S Alam 1 collaboration

Allan Kamau 1 collaboration

Jeroen Raes 1 collaboration

Susana Agustí 1 collaboration

Takashi Gojobori 1 collaboration

Dolors Vaqué 1 collaboration

Carlos Pedrós-Alió 1 collaboration

Ramon Massana 1 collaboration

Carlos M Duarte 1 collaboration

Josep M Gasol 1 collaboration

James M Wainaina 1 collaboration

Guillermo Dominguez-Huerta 1 collaboration

Jiarong Guo 1 collaboration

Mohamed Mohssen 1 collaboration

Funing Tian 1 collaboration

Akbar Adjie Pratama 1 collaboration

Benjamin Bolduc 1 collaboration

Olivier Zablocki 1 collaboration

Dylan Cronin 1 collaboration

Lindsey Solden 1 collaboration

Erwan Delage 1 collaboration

Jean-Marc Aury 1 collaboration

Quentin Carradec 1 collaboration

Corinne da Silva 1 collaboration

Elan Shatoff 1 collaboration

Ralf Bundschuh 1 collaboration

Kurt Fredrick 1 collaboration

Laura S Kubatko 1 collaboration

Samuel Chaffron 1 collaboration

Alexander I Culley 1 collaboration

Emmanuel Boss 1 collaboration

Guy Cochrane 1 collaboration

Gabriel Gorsky 1 collaboration

Nigel Grimsley 1 collaboration

Olivier Jaillon 1 collaboration

Fabrice Not 1 collaboration

Nicole Poulton 1 collaboration

Christian Sardet 1 collaboration

Sabrinia Speich 1 collaboration

Lars Stemmann 1 collaboration

Shinichi Sungawa 1 collaboration