Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.


Journal

Science (New York, N.Y.)
ISSN: 1095-9203
Titre abrégé: Science
Pays: United States
ID NLM: 0404511

Informations de publication

Date de publication:
08 04 2022
Historique:
entrez: 7 4 2022
pubmed: 8 4 2022
medline: 16 4 2022
Statut: ppublish

Résumé

Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are insufficiently studied outside disease settings. In this study, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth's RNA virus catalogs and their taxonomy, investigate their evolutionary origins, and assess their marine biogeography from pole to pole. Using new approaches to optimize discovery and classification, we identified RNA viruses that necessitate substantive revisions of taxonomy (doubling phyla and adding >50% new classes) and evolutionary understanding. "Species"-rank abundance determination revealed that viruses of the new phyla "

Identifiants

pubmed: 35389782
doi: 10.1126/science.abm5847
doi:

Substances chimiques

RNA 63231-63-0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

156-162

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM072528
Pays : United States

Commentaires et corrections

Type : CommentIn

Auteurs

Ahmed A Zayed (AA)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

James M Wainaina (JM)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Guillermo Dominguez-Huerta (G)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Eric Pelletier (E)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Jiarong Guo (J)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Mohamed Mohssen (M)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.
The Interdisciplinary Biophysics Graduate Program, Ohio State University, Columbus, OH 43210, USA.

Funing Tian (F)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Akbar Adjie Pratama (AA)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.

Benjamin Bolduc (B)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Olivier Zablocki (O)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Dylan Cronin (D)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

Lindsey Solden (L)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.

Erwan Delage (E)

Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.
Nantes Université, CNRS UMR 6004, LS2N, F-44000 Nantes, France.

Adriana Alberti (A)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Jean-Marc Aury (JM)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Quentin Carradec (Q)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Corinne da Silva (C)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Karine Labadie (K)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Julie Poulain (J)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Hans-Joachim Ruscheweyh (HJ)

Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland.

Guillem Salazar (G)

Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland.

Elan Shatoff (E)

Department of Physics, Ohio State University, Columbus, OH 43210, USA.

Ralf Bundschuh (R)

The Interdisciplinary Biophysics Graduate Program, Ohio State University, Columbus, OH 43210, USA.
Department of Physics, Ohio State University, Columbus, OH 43210, USA.
Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH 43210, USA.
Division of Hematology, Department of Internal Medicine, Ohio State University, Columbus, OH 43210, USA.

Kurt Fredrick (K)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.

Laura S Kubatko (LS)

Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, OH 43210, USA.
Department of Statistics, Ohio State University, Columbus, OH 43210, USA.

Samuel Chaffron (S)

Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.
Nantes Université, CNRS UMR 6004, LS2N, F-44000 Nantes, France.

Alexander I Culley (AI)

Département de Biochimie, Microbiologie et Bio-informatique, Université Laval, Québec, Québec G1V 0A6, Canada.

Shinichi Sunagawa (S)

Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland.

Jens H Kuhn (JH)

Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA.

Patrick Wincker (P)

Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.
Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

Matthew B Sullivan (MB)

Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.
EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.
Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.
The Interdisciplinary Biophysics Graduate Program, Ohio State University, Columbus, OH 43210, USA.
Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, OH 43210, USA.
Department of Civil, Environmental, and Geodetic Engineering, Ohio State University, Columbus, OH 43210, USA.

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Classifications MeSH