Dmitry M Chudakov

Affiliations
  • Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Translational Medicine, Pirogov Russian National Research Medical University, Moscow, Russia.
  • Genomics of Adaptive Immunity Department, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.
  • Central European Institute of Technology, Masaryk University, Brno, Czechia.

Publications (52)

CD4

Cell reports
Avec: Elena Brenna , Alexey N Davydov , Kristin Ladell , James E McLaren , Paolo Bonaiuti , Maria Metsger , James D Ramsden , Sarah C Gilbert , Teresa Lambe , David A Price , Suzanne L Campion , Dmitriy M Chudakov , Persephone Borrow , Andrew J McMichael

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.

Nucleic acids research
Avec: Dmitry V Bagaev , Renske M A Vroomans , Jerome Samir , Ulrik Stervbo , Cristina Rius , Garry Dolton , Alexander Greenshields-Watson , Meriem Attaf , Evgeny S Egorov , Ivan V Zvyagin , Nina Babel , David K Cole , Andrew J Godkin , Andrew K Sewell , Can Kesmir , Dmitriy M Chudakov , Fabio Luciani , Mikhail Shugay

Accounting for B-cell Behavior and Sampling Bias Predicts Anti-PD-L1 Response in Bladder Cancer.

Cancer immunology research
Avec: Ilya A Dyugay , Daniil K Lukyanov , Maria A Turchaninova , Ekaterina O Serebrovskaya , Ekaterina A Bryushkova , Andrew R Zaretsky , Oybek Khalmurzaev , Vsevolod B Matveev , Mikhail Shugay , Pavel V Shelyakin , Dmitriy M Chudakov

Inhibitory IL-10-producing CD4

eLife
Avec: Mathew Clement , Kristin Ladell , Kelly L Miners , Morgan Marsden , Lucy Chapman , Anna Cardus Figueras , Jake Scott , Robert Andrews , Simon Clare , Valeriia V Kriukova , Ksenia R Lupyr , Olga V Britanova , David R Withers , Simon A Jones , Dmitriy M Chudakov , David A Price , Ian R Humphreys

Toolkit for mapping the clonal landscape of tumor-infiltrating B cells.

Seminars in immunology
Avec: E O Serebrovskaya , E A Bryushkova , D K Lukyanov , N V Mushenkova , D M Chudakov , M A Turchaninova

Clonal structure and the specificity of vaccine-induced T cell response to SARS-CoV-2 Spike protein.

Frontiers in immunology
Avec: Saveliy A Sheetikov , Alexandra A Khmelevskaya , Ksenia V Zornikova , Ivan V Zvyagin , Alina S Shomuradova , Yana V Serdyuk , Naina T Shakirova , Iuliia O Peshkova , Aleksei Titov , Dmitrii S Romaniuk , Irina A Shagina , Dmitry M Chudakov , Dmitry O Kiryukhin , Olga V Shcherbakova , Ekaterina G Khamaganova , Vitalina Dzutseva , Andrei Afanasiev , Apollinariya V Bogolyubova , Grigory A Efimov

CXCR3 Identifies Human Naive CD8

Journal of immunology (Baltimore, Md. : 1950)
Avec: Gabriele De Simone , Emilia M C Mazza , Antonino Cassotta , Alexey N Davydov , Mirela Kuka , Veronica Zanon , Federica De Paoli , Eloise Scamardella , Maria Metsger , Alessandra Roberto , Karolina Pilipow , Federico S Colombo , Elena Tenedini , Enrico Tagliafico , Luca Gattinoni , Domenico Mavilio , Clelia Peano , David A Price , Satya P Singh , Joshua M Farber , Valentina Serra , Francesco Cucca , Francesco Ferrari , Valeria Orrù , Edoardo Fiorillo , Matteo Iannacone , Dmitriy M Chudakov , Federica Sallusto , Enrico Lugli

Two independent routes of post-translational chemistry in fluorescent protein FusionRed.

International journal of biological macromolecules
Avec: Liya Muslinkina , Vladimir Z Pletnev , Nadya V Pletneva , Dmitry A Ruchkin , Danila V Kolesov , Alexey M Bogdanov , Lubov A Kost , Tatiana V Rakitina , Yulia K Agapova , Irina I Shemyakina , Dmitry M Chudakov , Sergei Pletnev

TCRs with segment TRAV9-2 or a CDR3 histidine are overrepresented among nickel-specific CD4+ T cells.

Allergy
Avec: Marina Aparicio-Soto , Franziska Riedel , Melanie Leddermann , Petra Bacher , Alexander Scheffold , Heiner Kuhl , Bernd Timmermann , Dmitriy M Chudakov , Sonja Molin , Margitta Worm , Guido Heine , Hermann-Josef Thierse , Andreas Luch , Katherina Siewert

Deciphering Repertoire of B16 Melanoma Reactive TCRs by Immunization, In Vitro Restimulation and Sequencing of IFNγ-Secreting T Cells.

International journal of molecular sciences
Avec: Anna V Izosimova , Diana V Yuzhakova , Valeria D Skatova , Lilia N Volchkova , Elena V Zagainova , Dmitry M Chudakov , George V Sharonov

Naïve Regulatory T Cell Subset Is Altered in X-Linked Agammaglobulinemia.

Frontiers in immunology
Avec: Pavel V Shelyakin , Ksenia R Lupyr , Evgeny S Egorov , Ilya A Kofiadi , Dmitriy B Staroverov , Sofya A Kasatskaya , Valeriia V Kriukova , Irina A Shagina , Ekaterina M Merzlyak , Tatiana O Nakonechnaya , Elena A Latysheva , Irina A Manto , Musa R Khaitov , Sergey A Lukyanov , Dmitriy M Chudakov , Olga V Britanova

Adoptive Immunotherapy Based on Chain-Centric TCRs in Treatment of Infectious Diseases.

iScience
Avec: Anastasiia A Kalinina , Ludmila N Nesterenko , Alexandra V Bruter , Denis V Balunets , Dmitriy M Chudakov , Mark Izraelson , Olga V Britanova , Ludmila M Khromykh , Dmitry B Kazansky

Defective peripheral B cell selection in common variable immune deficiency patients with autoimmune manifestations.

Cell reports
Avec: Vanda Friman , Isabella Quinti , Alexey N Davydov , Mikhail Shugay , Chiara Farroni , Erik Engström , Shirin Pour Akaber , Sabina Barresi , Ahmed Mohamed , Federica Pulvirenti , Cinzia Milito , Guido Granata , Ezio Giorda , Sara Ahlström , Johanna Karlsson , Emiliano Marasco , Valentina Marcellini , Chiara Bocci , Simona Cascioli , Marco Scarsella , Ganesh Phad , Andreas Tilevik , Marco Tartaglia , Mats Bemark , Dmitriy M Chudakov , Rita Carsetti , Ola Grimsholm

Tocilizumab, netakimab, and baricitinib in patients with mild-to-moderate COVID-19: An observational study.

PloS one
Avec: Ekaterina A Bryushkova , Valeria D Skatova , Zinaida Y Mutovina , Alena I Zagrebneva , Daria S Fomina , Tatyana S Kruglova , Anna A Akopyan , Irina D Strazhesko , Sergey A Lukyanov , Olga N Tkacheva , Maryana A Lysenko , Dmitry M Chudakov

Different classes of genomic inserts contribute to human antibody diversity.

Proceedings of the National Academy of Sciences of the United States of America
Avec: Mikhail Lebedin , Mathilde Foglierini , Svetlana Khorkova , Clara Vázquez García , Christoph Ratswohl , Alexey N Davydov , Maria A Turchaninova , Claudia Daubenberger , Dmitriy M Chudakov , Antonio Lanzavecchia , Kathrin de la Rosa

SARS-CoV-2 escape from cytotoxic T cells during long-term COVID-19.

Nature communications
Avec: Oksana V Stanevich , Evgeniia I Alekseeva , Maria Sergeeva , Artem V Fadeev , Kseniya S Komissarova , Anna A Ivanova , Tamara S Simakova , Kirill A Vasilyev , Anna-Polina Shurygina , Marina A Stukova , Ksenia R Safina , Elena R Nabieva , Sofya K Garushyants , Galya V Klink , Evgeny A Bakin , Jullia V Zabutova , Anastasia N Kholodnaia , Olga V Lukina , Irina A Skorokhod , Viktoria V Ryabchikova , Nadezhda V Medvedeva , Dmitry A Lioznov , Daria M Danilenko , Dmitriy M Chudakov , Andrey B Komissarov , Georgii A Bazykin

Ultrasensitive allele inference from immune repertoire sequencing data with MiXCR.

Genome research
Avec: Artem Mikelov , George Nefedev , Aleksandr Tashkeev , Oscar L Rodriguez , Diego A Ortmans , Valeriia Skatova , Mark Izraelson , Alexey N Davydov , Stanislav Poslavsky , Souad Rahmouni , Corey T Watson , Dmitriy M Chudakov , Scott D Boyd , Dmitry A Bolotin

Memory CD4

Nature immunology
Avec: Na Li , Vincent van Unen , Tamim Abdelaal , Nannan Guo , Sofya A Kasatskaya , Kristin Ladell , James E McLaren , Evgeny S Egorov , Mark Izraelson , Susana M Chuva de Sousa Lopes , Thomas Höllt , Olga V Britanova , Jeroen Eggermont , Noel F C C de Miranda , Dmitriy M Chudakov , David A Price , Boudewijn P F Lelieveldt , Frits Koning

Intratumoral immunoglobulin isotypes predict survival in lung adenocarcinoma subtypes.

Journal for immunotherapy of cancer
Avec: O I Isaeva , G V Sharonov , E O Serebrovskaya , M A Turchaninova , A R Zaretsky , M Shugay , D M Chudakov

PiggyBac transposon tools for recessive screening identify B-cell lymphoma drivers in mice.

Nature communications
Avec: Julia Weber , Jorge de la Rosa , Carolyn S Grove , Markus Schick , Lena Rad , Olga Baranov , Alexander Strong , Anja Pfaus , Mathias J Friedrich , Thomas Engleitner , Robert Lersch , Rupert Öllinger , Michael Grau , Irene Gonzalez Menendez , Manuela Martella , Ursula Kohlhofer , Ruby Banerjee , Maria A Turchaninova , Anna Scherger , Gary J Hoffman , Julia Hess , Laura B Kuhn , Tim Ammon , Johnny Kim , Günter Schneider , Kristian Unger , Ursula Zimber-Strobl , Mathias Heikenwälder , Marc Schmidt-Supprian , Fengtang Yang , Dieter Saur , Pentao Liu , Katja Steiger , Dmitriy M Chudakov , Georg Lenz , Leticia Quintanilla-Martinez , Ulrich Keller , George S Vassiliou , Juan Cadiñanos , Allan Bradley , Roland Rad

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection.

eLife
Avec: Anastasia A Minervina , Ekaterina A Komech , Aleksei Titov , Meriem Bensouda Koraichi , Elisa Rosati , Ilgar Z Mamedov , Andre Franke , Grigory A Efimov , Dmitriy M Chudakov , Thierry Mora , Aleksandra M Walczak , Yuri B Lebedev , Mikhail V Pogorelyy

Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases.

Nature biotechnology
Avec: Pierre Barennes , Valentin Quiniou , Mikhail Shugay , Evgeniy S Egorov , Alexey N Davydov , Dmitriy M Chudakov , Imran Uddin , Mazlina Ismail , Theres Oakes , Benny Chain , Anne Eugster , Karl Kashofer , Peter P Rainer , Samuel Darko , Amy Ransier , Daniel C Douek , David Klatzmann , Encarnita Mariotti-Ferrandiz

Mutated Flt3Lg Provides Reduced Flt3 Recycling Compared to Wild-Type Flt3Lg and Retains the Specificity of Flt3Lg-Based CAR T-Cell Targeting in AML Models.

International journal of molecular sciences
Avec: Varvara Maiorova , Murad D Mollaev , Polina Vikhreva , Dmitriy M Chudakov , Alexey Kibardin , Michael A Maschan , Sergey Larin

Distinct organization of adaptive immunity in the long-lived rodent Spalax galili.

Nature aging
Avec: M Izraelson , M Metsger , A N Davydov , I A Shagina , M A Dronina , A S Obraztsova , D A Miskevich , I Z Mamedov , L N Volchkova , T O Nakonechnaya , M Shugay , D A Bolotin , D B Staroverov , G V Sharonov , E Y Kondratyuk , E V Zagaynova , S Lukyanov , I Shams , O V Britanova , D M Chudakov

B cell clonality in cancer.

Seminars in immunology
Avec: E A Bryushkova , N V Mushenkova , M A Turchaninova , D K Lukyanov , D M Chudakov , E O Serebrovskaya

Novel bimodal TRBD1-TRBD2 rearrangements with dual or absent D-region contribute to TRB V-(D)-J combinatorial diversity.

Frontiers in immunology
Avec: Anastasia O Smirnova , Anna M Miroshnichenkova , Laima D Belyaeva , Ilya V Kelmanson , Yuri B Lebedev , Ilgar Z Mamedov , Dmitriy M Chudakov , Alexander Y Komkov

Functionally specialized human CD4

eLife
Avec: Sofya A Kasatskaya , Kristin Ladell , Evgeniy S Egorov , Kelly L Miners , Alexey N Davydov , Maria Metsger , Dmitry B Staroverov , Elena K Matveyshina , Irina A Shagina , Ilgar Z Mamedov , Mark Izraelson , Pavel V Shelyakin , Olga V Britanova , David A Price , Dmitriy M Chudakov

B cells, plasma cells and antibody repertoires in the tumour microenvironment.

Nature reviews. Immunology
Avec: George V Sharonov , Ekaterina O Serebrovskaya , Diana V Yuzhakova , Olga V Britanova , Dmitriy M Chudakov

RNA-Seq-Based TCR Profiling Reveals Persistently Increased Intratumoral Clonality in Responders to Anti-PD-1 Therapy.

Frontiers in oncology
Avec: Ekaterina A Zhigalova , Anna I Izosimova , Diana V Yuzhakova , Lilia N Volchkova , Irina A Shagina , Maria A Turchaninova , Ekaterina O Serebrovskaya , Elena V Zagaynova , Dmitriy M Chudakov , George V Sharonov

MHC-II alleles shape the CDR3 repertoires of conventional and regulatory naïve CD4

Proceedings of the National Academy of Sciences of the United States of America
Avec: Nadezhda N Logunova , Valeriia V Kriukova , Pavel V Shelyakin , Evgeny S Egorov , Alina Pereverzeva , Nina G Bozhanova , Mikhail Shugay , Dmitrii S Shcherbinin , Mikhail V Pogorelyy , Ekaterina M Merzlyak , Vasiliy N Zubov , Jens Meiler , Dmitriy M Chudakov , Alexander S Apt , Olga V Britanova

Measuring Intratumoral Heterogeneity of Immune Repertoires.

Frontiers in oncology
Avec: Diana Vladimirovna Yuzhakova , Lilia N Volchkova , Mikhail Valerievich Pogorelyy , Ekaterina O Serebrovskaya , Irina A Shagina , Ekaterina A Bryushkova , Tatiana O Nakonechnaya , Anna V Izosimova , Daria S Zavyalova , Maria M Karabut , Mark Izraelson , Igor V Samoylenko , Vladimir E Zagainov , Dmitriy M Chudakov , Elena V Zagaynova , George Vladimirovich Sharonov

The Interplay between CD27

Cell reports
Avec: Ola Grimsholm , Eva Piano Mortari , Alexey N Davydov , Mikhail Shugay , Anna S Obraztsova , Chiara Bocci , Emiliano Marasco , Valentina Marcellini , Alaitz Aranburu , Chiara Farroni , Domenico Alessandro Silvestris , Cristina Cristofoletti , Ezio Giorda , Marco Scarsella , Simona Cascioli , Sabina Barresi , Vassilios Lougaris , Alessandro Plebani , Caterina Cancrini , Andrea Finocchi , Viviana Moschese , Diletta Valentini , Cristina Vallone , Fabrizio Signore , Giovanni de Vincentiis , Salvatore Zaffina , Giandomenico Russo , Angela Gallo , Franco Locatelli , Alberto E Tozzi , Marco Tartaglia , Dmitriy M Chudakov , Rita Carsetti

Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones.

eLife
Avec: Anastasia A Minervina , Mikhail V Pogorelyy , Ekaterina A Komech , Vadim K Karnaukhov , Petra Bacher , Elisa Rosati , Andre Franke , Dmitriy M Chudakov , Ilgar Z Mamedov , Yuri B Lebedev , Thierry Mora , Aleksandra M Walczak

HLA binding of self-peptides is biased towards proteins with specific molecular functions.

bioRxiv : the preprint server for biology
Avec: Vadim Karnaukhov , Wayne Paes , Isaac B Woodhouse , Thomas Partridge , Annalisa Nicastri , Simon Brackenridge , Dmitrii Scherbinin , Dmitry M Chudakov , Ivan V Zvyagin , Nicola Ternette , Hashem Koohy , Persephone Borrow , Mikhail Shugay

Pinpointing the tumor-specific T cells via TCR clusters.

eLife
Avec: Mikhail M Goncharov , Ekaterina A Bryushkova , Nikita I Sharaev , Valeria D Skatova , Anastasiya M Baryshnikova , George V Sharonov , Vadim Karnaukhov , Maria T Vakhitova , Igor V Samoylenko , Lev V Demidov , Sergey Lukyanov , Dmitriy M Chudakov , Ekaterina O Serebrovskaya

Memory persistence and differentiation into antibody-secreting cells accompanied by positive selection in longitudinal BCR repertoires.

eLife
Avec: Artem Mikelov , Evgeniia I Alekseeva , Ekaterina A Komech , Dmitry B Staroverov , Maria A Turchaninova , Mikhail Shugay , Dmitriy M Chudakov , Georgii A Bazykin , Ivan V Zvyagin

Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides.

Nature
Avec: Xinbo Yang , Lee I Garner , Ivan V Zvyagin , Michael A Paley , Ekaterina A Komech , Kevin M Jude , Xiang Zhao , Ricardo A Fernandes , Lynn M Hassman , Grace L Paley , Christina S Savvides , Simon Brackenridge , Max N Quastel , Dmitriy M Chudakov , Paul Bowness , Wayne M Yokoyama , Andrew J McMichael , Geraldine M Gillespie , K Christopher Garcia

Autologous T-Cell-Free Antigen Presentation System Unveils hCMV-Specific NK Cell Response.

Cells
Avec: Maria O Ustiuzhanina , Maria A Streltsova , Nikita D Timofeev , Maxim A Kryukov , Dmitriy M Chudakov , Elena I Kovalenko

Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism.

eLife
Avec: Tatyana O Nakonechnaya , Bruno Moltedo , Ekaterina V Putintseva , Sofya Leyn , Dmitry A Bolotin , Olga V Britanova , Mikhail Shugay , Dmitriy M Chudakov

γδ T-cell Receptors Derived from Breast Cancer-Infiltrating T Lymphocytes Mediate Antitumor Reactivity.

Cancer immunology research
Avec: Anke Janssen , Jose Villacorta Hidalgo , Dennis X Beringer , Sanne van Dooremalen , Febilla Fernando , Eline van Diest , Antonela R Terrizi , Peter Bronsert , Sylvia Kock , Annette Schmitt-Gräff , Martin Werner , Kerstin Heise , Marie Follo , Trudy Straetemans , Zsolt Sebestyen , Dmitry M Chudakov , Sofya A Kasatskaya , Felix E Frenkel , Sarina Ravens , Eric Spierings , Immo Prinz , Ralf Küppers , Miroslav Malkovsky , Paul Fisch , Jürgen Kuball

An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity.

Immunogenetics
Avec: Ivan V Zvyagin , Vasily O Tsvetkov , Dmitry M Chudakov , Mikhail Shugay

Natural Flt3Lg-Based Chimeric Antigen Receptor (Flt3-CAR) T Cells Successfully Target Flt3 on AML Cell Lines.

Vaccines
Avec: Varvara Maiorova , Murad D Mollaev , Polina Vikhreva , Elena Kulakovskaya , Dmitry Pershin , Dmitriy M Chudakov , Alexey Kibardin , Michael A Maschan , Sergey Larin

Detecting T cell receptors involved in immune responses from single repertoire snapshots.

PLoS biology
Avec: Mikhail V Pogorelyy , Anastasia A Minervina , Mikhail Shugay , Dmitriy M Chudakov , Yuri B Lebedev , Thierry Mora , Aleksandra M Walczak

Two subsets of stem-like CD8

Nature immunology
Avec: Giovanni Galletti , Gabriele De Simone , Emilia M C Mazza , Simone Puccio , Claudia Mezzanotte , Timothy M Bi , Alexey N Davydov , Maria Metsger , Eloise Scamardella , Giorgia Alvisi , Federica De Paoli , Veronica Zanon , Alice Scarpa , Barbara Camisa , Federico S Colombo , Achille Anselmo , Clelia Peano , Sara Polletti , Domenico Mavilio , Luca Gattinoni , Shannon K Boi , Benjamin A Youngblood , Rhiannon E Jones , Duncan M Baird , Emma Gostick , Sian Llewellyn-Lacey , Kristin Ladell , David A Price , Dmitriy M Chudakov , Evan W Newell , Monica Casucci , Enrico Lugli

Targeted depletion of TRBV9

Nature medicine
Avec: Olga V Britanova , Kseniia R Lupyr , Dmitry B Staroverov , Irina A Shagina , Alexey A Aleksandrov , Yakov Y Ustyugov , Dmitry V Somov , Alesia Klimenko , Nadejda A Shostak , Ivan V Zvyagin , Alexey V Stepanov , Ekaterina M Merzlyak , Alexey N Davydov , Mark Izraelson , Evgeniy S Egorov , Ekaterina A Bogdanova , Anna K Vladimirova , Pavel A Iakovlev , Denis A Fedorenko , Roman A Ivanov , Veronika I Skvortsova , Sergey Lukyanov , Dmitry M Chudakov

Comment on 'rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing'.

Briefings in bioinformatics
Avec: Alexey N Davydov , Dmitry A Bolotin , Stanislav V Poslavsky , Dmitry M Chudakov

Deconvolution of B cell receptor repertoire in multiple sclerosis patients revealed a delay in tBreg maturation.

Frontiers in immunology
Avec: Yakov A Lomakin , Ivan V Zvyagin , Leyla A Ovchinnikova , Marsel R Kabilov , Dmitriy B Staroverov , Artem Mikelov , Alexey E Tupikin , Maria Y Zakharova , Nadezda A Bykova , Vera S Mukhina , Alexander V Favorov , Maria Ivanova , Taras Simaniv , Yury P Rubtsov , Dmitriy M Chudakov , Maria N Zakharova , Sergey N Illarioshkin , Alexey A Belogurov , Alexander G Gabibov

SARS-CoV-2 evolution in a patient with secondary B-cell immunodeficiency: A clinical case.

Human vaccines & immunotherapeutics
Avec: Olgo A Mukhina , Daria S Fomina , Vasiliy V Parshin , Vladimir A Gushchin , Inna V Dolzhikova , Alexey M Shchetinin , Dmitriy M Chudakov , Evgeniia Alekseeva , Dmitriy Korostin , Georgii A Bazykin , Galya Klink , Denis Yu Logunov , Maryana A Lysenko

HLA variants have different preferences to present proteins with specific molecular functions which are complemented in frequent haplotypes.

Frontiers in immunology
Avec: Vadim Karnaukhov , Wayne Paes , Isaac B Woodhouse , Thomas Partridge , Annalisa Nicastri , Simon Brackenridge , Dmitrii Shcherbinin , Dmitry M Chudakov , Ivan V Zvyagin , Nicola Ternette , Hashem Koohy , Persephone Borrow , Mikhail Shugay

The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling.

eLife
Avec: Anastasia O Smirnova , Anna M Miroshnichenkova , Yulia V Olshanskaya , Michael A Maschan , Yuri B Lebedev , Dmitriy M Chudakov , Ilgar Z Mamedov , Alexander Komkov

Large-scale template-based structural modeling of T-cell receptors with known antigen specificity reveals complementarity features.

Frontiers in immunology
Avec: Dmitrii S Shcherbinin , Vadim K Karnaukhov , Ivan V Zvyagin , Dmitriy M Chudakov , Mikhail Shugay

Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen.

Nature computational science
Avec: Vadim K Karnaukhov , Dmitrii S Shcherbinin , Anton O Chugunov , Dmitriy M Chudakov , Roman G Efremov , Ivan V Zvyagin , Mikhail Shugay

Réseau de co-auteurs

Dmitriy M Chudakov 38 collaborations
Mikhail Shugay 14 collaborations
Alexey N Davydov 11 collaborations
Ivan V Zvyagin 11 collaborations
Olga V Britanova 9 collaborations
David A Price 6 collaborations
Irina A Shagina 6 collaborations
Mark Izraelson 6 collaborations
Kristin Ladell 5 collaborations
Maria A Turchaninova 5 collaborations
Ekaterina O Serebrovskaya 5 collaborations
Ilgar Z Mamedov 5 collaborations
Yuri B Lebedev 5 collaborations
Maria Metsger 4 collaborations
Evgeny S Egorov 4 collaborations
Ekaterina A Bryushkova 4 collaborations
Pavel V Shelyakin 4 collaborations
D M Chudakov 4 collaborations
George V Sharonov 4 collaborations
Sofya A Kasatskaya 4 collaborations
Ekaterina A Komech 4 collaborations
Mikhail V Pogorelyy 4 collaborations
Persephone Borrow 3 collaborations
Valeriia V Kriukova 3 collaborations
E O Serebrovskaya 3 collaborations
M A Turchaninova 3 collaborations
Diana V Yuzhakova 3 collaborations
Valeria D Skatova 3 collaborations
Lilia N Volchkova 3 collaborations
Ekaterina M Merzlyak 3 collaborations
Georgii A Bazykin 3 collaborations
Artem Mikelov 3 collaborations
Dmitry A Bolotin 3 collaborations
Anastasia A Minervina 3 collaborations
Thierry Mora 3 collaborations
Aleksandra M Walczak 3 collaborations
Evgeniy S Egorov 3 collaborations
Michael A Maschan 3 collaborations
Dmitry B Staroverov 3 collaborations
Dmitrii S Shcherbinin 3 collaborations
Vadim K Karnaukhov 3 collaborations
Vadim Karnaukhov 3 collaborations
Simon Brackenridge 3 collaborations
James E McLaren 2 collaborations
Andrew J McMichael 2 collaborations
Kelly L Miners 2 collaborations
Ksenia R Lupyr 2 collaborations
E A Bryushkova 2 collaborations
D K Lukyanov 2 collaborations
N V Mushenkova 2 collaborations
Aleksei Titov 2 collaborations
Grigory A Efimov 2 collaborations
Gabriele De Simone 2 collaborations
Emilia M C Mazza 2 collaborations
Veronica Zanon 2 collaborations
Federica De Paoli 2 collaborations
Eloise Scamardella 2 collaborations
Federico S Colombo 2 collaborations
Luca Gattinoni 2 collaborations
Domenico Mavilio 2 collaborations
Clelia Peano 2 collaborations
Enrico Lugli 2 collaborations
Petra Bacher 2 collaborations
Anna V Izosimova 2 collaborations
Dmitriy B Staroverov 2 collaborations
Tatiana O Nakonechnaya 2 collaborations
Sergey A Lukyanov 2 collaborations
Chiara Farroni 2 collaborations
Sabina Barresi 2 collaborations
Ezio Giorda 2 collaborations
Emiliano Marasco 2 collaborations
Valentina Marcellini 2 collaborations
Chiara Bocci 2 collaborations
Simona Cascioli 2 collaborations
Marco Scarsella 2 collaborations
Marco Tartaglia 2 collaborations
Rita Carsetti 2 collaborations
Ola Grimsholm 2 collaborations
Daria S Fomina 2 collaborations
Maryana A Lysenko 2 collaborations
Evgeniia I Alekseeva 2 collaborations
G V Sharonov 2 collaborations
M Shugay 2 collaborations
Elisa Rosati 2 collaborations
Andre Franke 2 collaborations
Varvara Maiorova 2 collaborations
Murad D Mollaev 2 collaborations
Polina Vikhreva 2 collaborations
Alexey Kibardin 2 collaborations
Sergey Larin 2 collaborations
Anastasia O Smirnova 2 collaborations
Anna M Miroshnichenkova 2 collaborations
Elena V Zagaynova 2 collaborations
Igor V Samoylenko 2 collaborations
Wayne Paes 2 collaborations
Isaac B Woodhouse 2 collaborations
Thomas Partridge 2 collaborations
Annalisa Nicastri 2 collaborations
Nicola Ternette 2 collaborations
Hashem Koohy 2 collaborations
Sergey Lukyanov 2 collaborations
Elena Brenna 1 collaboration
Paolo Bonaiuti 1 collaboration
James D Ramsden 1 collaboration
Sarah C Gilbert 1 collaboration
Teresa Lambe 1 collaboration
Suzanne L Campion 1 collaboration
Dmitry V Bagaev 1 collaboration
Renske M A Vroomans 1 collaboration
Jerome Samir 1 collaboration
Ulrik Stervbo 1 collaboration
Cristina Rius 1 collaboration
Garry Dolton 1 collaboration
Alexander Greenshields-Watson 1 collaboration
Meriem Attaf 1 collaboration
Nina Babel 1 collaboration
David K Cole 1 collaboration
Andrew J Godkin 1 collaboration
Andrew K Sewell 1 collaboration
Can Kesmir 1 collaboration
Fabio Luciani 1 collaboration
Ilya A Dyugay 1 collaboration
Daniil K Lukyanov 1 collaboration
Andrew R Zaretsky 1 collaboration
Oybek Khalmurzaev 1 collaboration
Vsevolod B Matveev 1 collaboration
Mathew Clement 1 collaboration
Morgan Marsden 1 collaboration
Lucy Chapman 1 collaboration
Anna Cardus Figueras 1 collaboration
Jake Scott 1 collaboration
Robert Andrews 1 collaboration
Simon Clare 1 collaboration
David R Withers 1 collaboration
Simon A Jones 1 collaboration
Ian R Humphreys 1 collaboration
Saveliy A Sheetikov 1 collaboration
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