F Alex Feltus

Affiliations

Dept of Genetics and Biochemistry, Clemson University, 154 Poole Agricultural Center Clemson, SC 29634, USA.

Publications (28)

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.

Database : the journal of biological databases and curation

Avec: Shawna Spoor , Connor Wytko , Brian Soto , Ming Chen , Abdullah Almsaeed , Bradford Condon , Nic Herndon , Heidi Hough , Sook Jung , Meg Staton , Jill Wegrzyn , Dorrie Main , F Alex Feltus , Stephen P Ficklin

Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis.

Frontiers in plant science

Avec: William L Poehlman , Elise L Schnabel , Suchitra A Chavan , Julia A Frugoli , Frank Alex Feltus

Linking Binary Gene Relationships to Drivers of Renal Cell Carcinoma Reveals Convergent Function in Alternate Tumor Progression Paths.

Scientific reports

Avec: William L Poehlman , James J Hsieh , F Alex Feltus

Time Series Transcriptome Analysis in

Frontiers in plant science

Avec: Yueyao Gao , Bradley Selee , Elise L Schnabel , William L Poehlman , Suchitra A Chavan , Julia A Frugoli , Frank Alex Feltus

The Evolution of an Invasive Plant,

Frontiers in genetics

Avec: Andrew H Paterson , WenQian Kong , Robyn M Johnston , Pheonah Nabukalu , Guohong Wu , William L Poehlman , Valorie H Goff , Krista Isaacs , Tae-Ho Lee , Hui Guo , Dong Zhang , Uzay U Sezen , Megan Kennedy , Diane Bauer , Frank A Feltus , Eva Weltzien , Henry Frederick Rattunde , Jacob N Barney , Kerrie Barry , T Stan Cox , Michael J Scanlon

Uncovering biomarker genes with enriched classification potential from Hallmark gene sets.

Scientific reports

Avec: Colin A Targonski , Courtney A Shearer , Benjamin T Shealy , Melissa C Smith , F Alex Feltus

Autism risk genes are evolutionarily ancient and maintain a unique feature landscape that echoes their function.

Autism research : official journal of the International Society for Autism Research

Avec: Emily L Casanova , Andrew E Switala , Srini Dandamudi , Allison R Hickman , Joshua Vandenbrink , Julia L Sharp , Frank Alex Feltus , Manuel F Casanova

Ergot alkaloid exposure during gestation alters: 3. Fetal growth, muscle fiber development, and miRNA transcriptome1.

Journal of animal science

Avec: Maslyn A Greene , Jessica L Britt , Rhonda R Powell , F Alex Feltus , William C Bridges , Terri Bruce , James L Klotz , Markus F Miller , Susan K Duckett

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.

Bioinformatics advances

Avec: Arnab Mutsuddy , Cemal Erdem , Jonah R Huggins , Misha Salim , Daniel Cook , Nicole Hobbs , F Alex Feltus , Marc R Birtwistle

NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles.

G3 (Bethesda, Md.)

Avec: Benafsh Husain , Allison R Hickman , Yuqing Hang , Benjamin T Shealy , Karan Sapra , F Alex Feltus

Identification of condition-specific biomarker systems in uterine cancer.

G3 (Bethesda, Md.)

Avec: Allison R Hickman , Yuqing Hang , Rini Pauly , Frank A Feltus

Named Data Networking for Genomics Data Management and Integrated Workflows.

Frontiers in big data

Avec: Cameron Ogle , David Reddick , Coleman McKnight , Tyler Biggs , Rini Pauly , Stephen P Ficklin , F Alex Feltus , Susmit Shannigrahi

Exploration into biomarker potential of region-specific brain gene co-expression networks.

Scientific reports

Avec: Yuqing Hang , Mohammed Aburidi , Benafsh Husain , Allison R Hickman , William L Poehlman , F Alex Feltus

Enrichment of a subset of Neanderthal polymorphisms in autistic probands and siblings.

Molecular psychiatry

Avec: Rini Pauly , Layla Johnson , F Alex Feltus , Emily L Casanova

Laser capture microdissection transcriptome reveals spatiotemporal tissue gene expression patterns of M. truncatula roots responding to rhizobia.

Molecular plant-microbe interactions : MPMI

Avec: Elise Schnabel , Jacklyn Thomas , Rabia El-Hawaz , Yueyao Gao , William Poehlman , Suchitra Chavan , Asher Pasha , Eddi Esteban , Nicholas L Provart , F Alex Feltus , Julia Frugoli

Cellular State Transformations Using Deep Learning for Precision Medicine Applications.

Patterns (New York, N.Y.)

Avec: Colin Targonski , M Reed Bender , Benjamin T Shealy , Benafsh Husain , Bill Paseman , Melissa C Smith , F Alex Feltus

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.

Database : the journal of biological databases and curation

Avec: Shawna Spoor , Chun-Huai Cheng , Lacey-Anne Sanderson , Bradford Condon , Abdullah Almsaeed , Ming Chen , Anthony Bretaudeau , Helena Rasche , Sook Jung , Dorrie Main , Kirstin Bett , Margaret Staton , Jill L Wegrzyn , F Alex Feltus , Stephen P Ficklin

Addressing noise in co-expression network construction.

Briefings in bioinformatics

Avec: Joshua J R Burns , Benjamin T Shealy , Mitchell S Greer , John A Hadish , Matthew T McGowan , Tyler Biggs , Melissa C Smith , F Alex Feltus , Stephen P Ficklin

Simulating the restoration of normal gene expression from different thyroid cancer stages using deep learning.

BMC cancer

Avec: Nicole M Nelligan , M Reed Bender , F Alex Feltus

The single-cell transcriptome program of nodule development cellular lineages in Medicago truncatula.

Cell reports

Avec: Wendell J Pereira , Jade Boyd , Daniel Conde , Paolo M Triozzi , Kelly M Balmant , Christopher Dervinis , Henry W Schmidt , Carolina Boaventura-Novaes , Sanhita Chakraborty , Sara A Knaack , Yueyao Gao , Frank Alexander Feltus , Sushmita Roy , Jean-Michel Ané , Julia Frugoli , Matias Kirst

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Current issues in molecular biology

Avec: Elise L Schnabel , Suchitra A Chavan , Yueyao Gao , William L Poehlman , Frank Alex Feltus , Julia A Frugoli

EdgeScaping: Mapping the spatial distribution of pairwise gene expression intensities.

PloS one

Avec: Benafsh Husain , F Alex Feltus

Moving Just Enough Deep Sequencing Data to Get the Job Done.

Bioinformatics and biology insights

Avec: Nicholas Mills , Ethan M Bensman , William L Poehlman , Walter B Ligon , F Alex Feltus

Identification of condition-specific regulatory mechanisms in normal and cancerous human lung tissue.

BMC genomics

Avec: Yuqing Hang , Josh Burns , Benjamin T Shealy , Rini Pauly , Stephen P Ficklin , Frank A Feltus

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure.

BMC bioinformatics

Avec: John A Hadish , Tyler D Biggs , Benjamin T Shealy , M Reed Bender , Coleman B McKnight , Connor Wytko , Melissa C Smith , F Alex Feltus , Loren Honaas , Stephen P Ficklin

Negotiated Sharing of Pandemic Data, Models, and Resources.

Negotiation journal

Avec: Joel Cutcher-Gershenfeld , Karen S Baker , Nicholas Berente , Paul Arthur Berkman , Pat Canavan , F Alex Feltus , Alysia Garmulewicz , Ron Hutchins , John Leslie King , Christine Kirkpatrick , Chris Lenhardt , Spencer Lewis , Michael Maffe , Barbara Mittleman , Rajesh Sampath , Namchul Shin , Shelley Stall , Susan Winter , Pips Veazey

Discovery of eQTL Alleles Associated with Autism Spectrum Disorder: A Case-Control Study.

Journal of autism and developmental disorders

Avec: Allison R Hickman , Bradley Selee , Rini Pauly , Benafsh Husain , Yuqing Hang , Frank Alex Feltus

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling.

Nature communications

Avec: Cemal Erdem , Arnab Mutsuddy , Ethan M Bensman , William B Dodd , Michael M Saint-Antoine , Mehdi Bouhaddou , Robert C Blake , Sean M Gross , Laura M Heiser , F Alex Feltus , Marc R Birtwistle

Réseau de co-auteurs

William L Poehlman 7 collaborations

Stephen P Ficklin 6 collaborations

Benjamin T Shealy 6 collaborations

Frank Alex Feltus 5 collaborations

Allison R Hickman 5 collaborations

Benafsh Husain 5 collaborations

Yuqing Hang 5 collaborations

Rini Pauly 5 collaborations

Yueyao Gao 4 collaborations

Melissa C Smith 4 collaborations

Elise L Schnabel 3 collaborations

Suchitra A Chavan 3 collaborations

Julia A Frugoli 3 collaborations

Frank A Feltus 3 collaborations

M Reed Bender 3 collaborations

Shawna Spoor 2 collaborations

Connor Wytko 2 collaborations

Ming Chen 2 collaborations

Abdullah Almsaeed 2 collaborations

Bradford Condon 2 collaborations

Sook Jung 2 collaborations

Dorrie Main 2 collaborations

Bradley Selee 2 collaborations

Emily L Casanova 2 collaborations

Arnab Mutsuddy 2 collaborations

Cemal Erdem 2 collaborations

Marc R Birtwistle 2 collaborations

Tyler Biggs 2 collaborations

Julia Frugoli 2 collaborations

John A Hadish 2 collaborations

Ethan M Bensman 2 collaborations

Brian Soto 1 collaboration

Nic Herndon 1 collaboration

Heidi Hough 1 collaboration

Meg Staton 1 collaboration

Jill Wegrzyn 1 collaboration

James J Hsieh 1 collaboration

Andrew H Paterson 1 collaboration

WenQian Kong 1 collaboration

Robyn M Johnston 1 collaboration

Pheonah Nabukalu 1 collaboration

Guohong Wu 1 collaboration

Valorie H Goff 1 collaboration

Krista Isaacs 1 collaboration

Tae-Ho Lee 1 collaboration

Hui Guo 1 collaboration

Dong Zhang 1 collaboration

Uzay U Sezen 1 collaboration

Megan Kennedy 1 collaboration

Diane Bauer 1 collaboration

Eva Weltzien 1 collaboration

Henry Frederick Rattunde 1 collaboration

Jacob N Barney 1 collaboration

Kerrie Barry 1 collaboration

T Stan Cox 1 collaboration

Michael J Scanlon 1 collaboration

Colin A Targonski 1 collaboration

Courtney A Shearer 1 collaboration

Andrew E Switala 1 collaboration

Srini Dandamudi 1 collaboration

Joshua Vandenbrink 1 collaboration

Julia L Sharp 1 collaboration

Manuel F Casanova 1 collaboration

Maslyn A Greene 1 collaboration

Jessica L Britt 1 collaboration

Rhonda R Powell 1 collaboration

William C Bridges 1 collaboration

Terri Bruce 1 collaboration

James L Klotz 1 collaboration

Markus F Miller 1 collaboration

Susan K Duckett 1 collaboration

Jonah R Huggins 1 collaboration

Misha Salim 1 collaboration

Daniel Cook 1 collaboration

Nicole Hobbs 1 collaboration

Karan Sapra 1 collaboration

Cameron Ogle 1 collaboration

David Reddick 1 collaboration

Coleman McKnight 1 collaboration

Susmit Shannigrahi 1 collaboration

Mohammed Aburidi 1 collaboration

Layla Johnson 1 collaboration

Elise Schnabel 1 collaboration

Jacklyn Thomas 1 collaboration

Rabia El-Hawaz 1 collaboration

William Poehlman 1 collaboration

Suchitra Chavan 1 collaboration

Asher Pasha 1 collaboration

Eddi Esteban 1 collaboration

Nicholas L Provart 1 collaboration

Colin Targonski 1 collaboration

Bill Paseman 1 collaboration

Chun-Huai Cheng 1 collaboration

Lacey-Anne Sanderson 1 collaboration

Anthony Bretaudeau 1 collaboration

Helena Rasche 1 collaboration

Kirstin Bett 1 collaboration

Margaret Staton 1 collaboration

Jill L Wegrzyn 1 collaboration

Joshua J R Burns 1 collaboration

Mitchell S Greer 1 collaboration

Matthew T McGowan 1 collaboration

Nicole M Nelligan 1 collaboration

Wendell J Pereira 1 collaboration

Jade Boyd 1 collaboration

Daniel Conde 1 collaboration

Paolo M Triozzi 1 collaboration

Kelly M Balmant 1 collaboration

Christopher Dervinis 1 collaboration

Henry W Schmidt 1 collaboration

Carolina Boaventura-Novaes 1 collaboration

Sanhita Chakraborty 1 collaboration

Sara A Knaack 1 collaboration

Frank Alexander Feltus 1 collaboration

Sushmita Roy 1 collaboration

Jean-Michel Ané 1 collaboration

Matias Kirst 1 collaboration

Nicholas Mills 1 collaboration

Walter B Ligon 1 collaboration

Josh Burns 1 collaboration

Tyler D Biggs 1 collaboration

Coleman B McKnight 1 collaboration

Loren Honaas 1 collaboration

Joel Cutcher-Gershenfeld 1 collaboration

Karen S Baker 1 collaboration

Nicholas Berente 1 collaboration

Paul Arthur Berkman 1 collaboration

Pat Canavan 1 collaboration

Alysia Garmulewicz 1 collaboration

Ron Hutchins 1 collaboration

John Leslie King 1 collaboration

Christine Kirkpatrick 1 collaboration

Chris Lenhardt 1 collaboration

Spencer Lewis 1 collaboration

Michael Maffe 1 collaboration

Barbara Mittleman 1 collaboration

Rajesh Sampath 1 collaboration

Namchul Shin 1 collaboration

Shelley Stall 1 collaboration

Susan Winter 1 collaboration

Pips Veazey 1 collaboration

William B Dodd 1 collaboration

Michael M Saint-Antoine 1 collaboration

Mehdi Bouhaddou 1 collaboration

Robert C Blake 1 collaboration

Sean M Gross 1 collaboration

Laura M Heiser 1 collaboration