F Amman

Affiliations

Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14, Vienna 1090, Austria.

Publications (19)

WAVES (Web-based tool for Analysis and Visualization of Environmental Samples)-a web application for visualization of wastewater pathogen sequencing results.

Bioinformatics (Oxford, England)

Avec: Petr Triska , Fabian Amman , Lukas Endler , Andreas Bergthaler

An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype.

Nucleic acids research

Avec: Prajakta Bajad , Florian Ebner , Fabian Amman , Brigitta Szabó , Utkarsh Kapoor , Greeshma Manjali , Alwine Hildebrandt , Michael P Janisiw , Michael F Jantsch

A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing.

Genome research

Avec: Konstantin Licht , Utkarsh Kapoor , Fabian Amman , Ernesto Picardi , David Martin , Prajakta Bajad , Michael F Jantsch

ADAR-deficiency perturbs the global splicing landscape in mouse tissues.

Genome research

Avec: Utkarsh Kapoor , Konstantin Licht , Fabian Amman , Tobias Jakobi , David Martin , Christoph Dieterich , Michael F Jantsch

Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence-An Experimental Study of the Human Voltage-Dependent Anion Channel.

Membranes

Avec: Sonja Zayni , Samar Damiati , Susana Moreno-Flores , Fabian Amman , Ivo Hofacker , David Jin , Eva-Kathrin Ehmoser

Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B.

Nucleic acids research

Avec: Elisa Vilardo , Fabian Amman , Ursula Toth , Annika Kotter , Mark Helm , Walter Rossmanith

Identification of RNA 3´ ends and termination sites in

RNA biology

Avec: Sarah J Berkemer , Lisa-Katharina Maier , Fabian Amman , Stephan H Bernhart , Julia Wörtz , Pascal Märkle , Friedhelm Pfeiffer , Peter F Stadler , Anita Marchfelder

Transcriptional Responses to IFN-γ Require Mediator Kinase-Dependent Pause Release and Mechanistically Distinct CDK8 and CDK19 Functions.

Molecular cell

Avec: Iris Steinparzer , Vitaly Sedlyarov , Jonathan D Rubin , Kevin Eislmayr , Matthew D Galbraith , Cecilia B Levandowski , Terezia Vcelkova , Lucy Sneezum , Florian Wascher , Fabian Amman , Renata Kleinova , Heather Bender , Zdenek Andrysik , Joaquin M Espinosa , Giulio Superti-Furga , Robin D Dowell , Dylan J Taatjes , Pavel Kovarik

Adaptor protein RapZ activates endoribonuclease RNase E by protein-protein interaction to cleave a small regulatory RNA.

RNA (New York, N.Y.)

Avec: Svetlana Durica-Mitic , Yvonne Göpel , Fabian Amman , Boris Görke

Emergence of SARS-CoV-2 Alpha lineage and its correlation with quantitative wastewater-based epidemiology data.

Water research

Avec: Elena Radu , Amandine Masseron , Fabian Amman , Anna Schedl , Benedikt Agerer , Lukas Endler , Thomas Penz , Christoph Bock , Andreas Bergthaler , Julia Vierheilig , Peter Hufnagl , Irina Korschineck , Jörg Krampe , Norbert Kreuzinger

Rewiring of Gene Expression in

Frontiers in microbiology

Avec: Marlena Rozner , Ella Nukarinen , Michael T Wolfinger , Fabian Amman , Wolfram Weckwerth , Udo Bläsi , Elisabeth Sonnleitner

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples.

BMC bioinformatics

Avec: Askar Gafurov , Andrej Baláž , Fabian Amman , Kristína Boršová , Viktória Čabanová , Boris Klempa , Andreas Bergthaler , Tomáš Vinař , Broňa Brejová

Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

Avec: Olga Frank , David Acitores Balboa , Maria Novatchkova , Ezgi Özkan , Marcus Martin Strobl , Ramesh Yelagandula , Tanino Guiseppe Albanese , Lukas Endler , Fabian Amman , Vera Felsenstein , Milanka Gavrilovic , Melanie Acosta , Timothej Patocka , Alexander Vogt , Ido Tamir , Julia Klikovits , Alexander Zoufaly , Tamara Seitz , Manuela Födinger , Andreas Bergthaler , Alexander Indra , Daniela Schmid , Peter Klimek , Alexander Stark , Franz Allerberger , Bernhard Benka , Katharina Reich , Luisa Cochella , Ulrich Elling

Comparative Omics Analysis of Historic and Recent Isolates of Bordetella pertussis and Effects of Genome Rearrangements on Evolution.

Emerging infectious diseases

Avec: Ana Dienstbier , Fabian Amman , Denisa Petráčková , Daniel Štipl , Jan Čapek , Jana Zavadilová , Kateřina Fabiánová , Jakub Držmíšek , Dilip Kumar , Mark Wildung , Derek Pouchnik , Branislav Večerek

iRAPs curb antisense transcription in E. coli.

Nucleic acids research

Avec: Andrés Magán , Fabian Amman , Fatinah El-Isa , Natascha Hartl , Ilya Shamovsky , Evgeny Nudler , Renée Schroeder , Nadezda Sedlyarova

Inosine induces context-dependent recoding and translational stalling.

Nucleic acids research

Avec: Konstantin Licht , Markus Hartl , Fabian Amman , Dorothea Anrather , Michael P Janisiw , Michael F Jantsch

Detection and abundance of SARS-CoV-2 in wastewater in Liechtenstein, and the estimation of prevalence and impact of the B.1.1.7 variant.

Journal of water and health

Avec: R Markt , L Endler , F Amman , A Schedl , T Penz , M Büchel-Marxer , D Grünbacher , M Mayr , E Peer , M Pedrazzini , W Rauch , A O Wagner , F Allerberger , A Bergthaler , H Insam

Breakthrough Infections in SARS-CoV-2-Vaccinated Multiple Myeloma Patients Improve Cross-Protection against Omicron Variants.

Vaccines

Avec: Angelika Wagner , Erika Garner-Spitzer , Claudia Auer , Pia Gattinger , Ines Zwazl , René Platzer , Maria Orola-Taus , Peter Pichler , Fabian Amman , Andreas Bergthaler , Johannes B Huppa , Hannes Stockinger , Christoph C Zielinski , Rudolf Valenta , Michael Kundi , Ursula Wiedermann

Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale.

Nature biotechnology

Avec: Fabian Amman , Rudolf Markt , Lukas Endler , Sebastian Hupfauf , Benedikt Agerer , Anna Schedl , Lukas Richter , Melanie Zechmeister , Martin Bicher , Georg Heiler , Petr Triska , Matthew Thornton , Thomas Penz , Martin Senekowitsch , Jan Laine , Zsofia Keszei , Peter Klimek , Fabiana Nägele , Markus Mayr , Beatrice Daleiden , Martin Steinlechner , Harald Niederstätter , Petra Heidinger , Wolfgang Rauch , Christoph Scheffknecht , Gunther Vogl , Günther Weichlinger , Andreas Otto Wagner , Katarzyna Slipko , Amandine Masseron , Elena Radu , Franz Allerberger , Niki Popper , Christoph Bock , Daniela Schmid , Herbert Oberacher , Norbert Kreuzinger , Heribert Insam , Andreas Bergthaler

Réseau de co-auteurs

Fabian Amman 18 collaborations

Andreas Bergthaler 6 collaborations

Lukas Endler 4 collaborations

Michael F Jantsch 4 collaborations

Utkarsh Kapoor 3 collaborations

Konstantin Licht 3 collaborations

Petr Triska 2 collaborations

Prajakta Bajad 2 collaborations

Michael P Janisiw 2 collaborations

David Martin 2 collaborations

Elena Radu 2 collaborations

Amandine Masseron 2 collaborations

Anna Schedl 2 collaborations

Benedikt Agerer 2 collaborations

Thomas Penz 2 collaborations

Christoph Bock 2 collaborations

Norbert Kreuzinger 2 collaborations

Daniela Schmid 2 collaborations

Peter Klimek 2 collaborations

Franz Allerberger 2 collaborations

Florian Ebner 1 collaboration

Brigitta Szabó 1 collaboration

Greeshma Manjali 1 collaboration

Alwine Hildebrandt 1 collaboration

Ernesto Picardi 1 collaboration

Tobias Jakobi 1 collaboration

Christoph Dieterich 1 collaboration

Sonja Zayni 1 collaboration

Samar Damiati 1 collaboration

Susana Moreno-Flores 1 collaboration

Ivo Hofacker 1 collaboration

David Jin 1 collaboration

Eva-Kathrin Ehmoser 1 collaboration

Elisa Vilardo 1 collaboration

Ursula Toth 1 collaboration

Annika Kotter 1 collaboration

Mark Helm 1 collaboration

Walter Rossmanith 1 collaboration

Sarah J Berkemer 1 collaboration

Lisa-Katharina Maier 1 collaboration

Stephan H Bernhart 1 collaboration

Julia Wörtz 1 collaboration

Pascal Märkle 1 collaboration

Friedhelm Pfeiffer 1 collaboration

Peter F Stadler 1 collaboration

Anita Marchfelder 1 collaboration

Iris Steinparzer 1 collaboration

Vitaly Sedlyarov 1 collaboration

Jonathan D Rubin 1 collaboration

Kevin Eislmayr 1 collaboration

Matthew D Galbraith 1 collaboration

Cecilia B Levandowski 1 collaboration

Terezia Vcelkova 1 collaboration

Lucy Sneezum 1 collaboration

Florian Wascher 1 collaboration

Renata Kleinova 1 collaboration

Heather Bender 1 collaboration

Zdenek Andrysik 1 collaboration

Joaquin M Espinosa 1 collaboration

Giulio Superti-Furga 1 collaboration

Robin D Dowell 1 collaboration

Dylan J Taatjes 1 collaboration

Pavel Kovarik 1 collaboration

Svetlana Durica-Mitic 1 collaboration

Yvonne Göpel 1 collaboration

Boris Görke 1 collaboration

Julia Vierheilig 1 collaboration

Peter Hufnagl 1 collaboration

Irina Korschineck 1 collaboration

Jörg Krampe 1 collaboration

Marlena Rozner 1 collaboration

Ella Nukarinen 1 collaboration

Michael T Wolfinger 1 collaboration

Wolfram Weckwerth 1 collaboration

Udo Bläsi 1 collaboration

Elisabeth Sonnleitner 1 collaboration

Askar Gafurov 1 collaboration

Andrej Baláž 1 collaboration

Kristína Boršová 1 collaboration

Viktória Čabanová 1 collaboration

Boris Klempa 1 collaboration

Tomáš Vinař 1 collaboration

Broňa Brejová 1 collaboration

Olga Frank 1 collaboration

David Acitores Balboa 1 collaboration

Maria Novatchkova 1 collaboration

Ezgi Özkan 1 collaboration

Marcus Martin Strobl 1 collaboration

Ramesh Yelagandula 1 collaboration

Tanino Guiseppe Albanese 1 collaboration

Vera Felsenstein 1 collaboration

Milanka Gavrilovic 1 collaboration

Melanie Acosta 1 collaboration

Timothej Patocka 1 collaboration

Alexander Vogt 1 collaboration

Ido Tamir 1 collaboration

Julia Klikovits 1 collaboration

Alexander Zoufaly 1 collaboration

Tamara Seitz 1 collaboration

Manuela Födinger 1 collaboration

Alexander Indra 1 collaboration

Alexander Stark 1 collaboration

Bernhard Benka 1 collaboration

Katharina Reich 1 collaboration

Luisa Cochella 1 collaboration

Ulrich Elling 1 collaboration

Ana Dienstbier 1 collaboration

Denisa Petráčková 1 collaboration

Daniel Štipl 1 collaboration

Jan Čapek 1 collaboration

Jana Zavadilová 1 collaboration

Kateřina Fabiánová 1 collaboration

Jakub Držmíšek 1 collaboration

Dilip Kumar 1 collaboration

Mark Wildung 1 collaboration

Derek Pouchnik 1 collaboration

Branislav Večerek 1 collaboration

Andrés Magán 1 collaboration

Fatinah El-Isa 1 collaboration

Natascha Hartl 1 collaboration

Ilya Shamovsky 1 collaboration

Evgeny Nudler 1 collaboration

Renée Schroeder 1 collaboration

Nadezda Sedlyarova 1 collaboration

Markus Hartl 1 collaboration

Dorothea Anrather 1 collaboration

R Markt 1 collaboration

L Endler 1 collaboration

A Schedl 1 collaboration

T Penz 1 collaboration

M Büchel-Marxer 1 collaboration

D Grünbacher 1 collaboration

M Mayr 1 collaboration

E Peer 1 collaboration

M Pedrazzini 1 collaboration

W Rauch 1 collaboration

A O Wagner 1 collaboration

F Allerberger 1 collaboration

A Bergthaler 1 collaboration

H Insam 1 collaboration

Angelika Wagner 1 collaboration

Erika Garner-Spitzer 1 collaboration

Claudia Auer 1 collaboration

Pia Gattinger 1 collaboration

Ines Zwazl 1 collaboration

René Platzer 1 collaboration

Maria Orola-Taus 1 collaboration

Peter Pichler 1 collaboration

Johannes B Huppa 1 collaboration

Hannes Stockinger 1 collaboration

Christoph C Zielinski 1 collaboration

Rudolf Valenta 1 collaboration

Michael Kundi 1 collaboration

Ursula Wiedermann 1 collaboration

Rudolf Markt 1 collaboration

Sebastian Hupfauf 1 collaboration

Lukas Richter 1 collaboration

Melanie Zechmeister 1 collaboration

Martin Bicher 1 collaboration

Georg Heiler 1 collaboration

Matthew Thornton 1 collaboration

Martin Senekowitsch 1 collaboration

Jan Laine 1 collaboration

Zsofia Keszei 1 collaboration

Fabiana Nägele 1 collaboration

Markus Mayr 1 collaboration

Beatrice Daleiden 1 collaboration

Martin Steinlechner 1 collaboration

Harald Niederstätter 1 collaboration

Petra Heidinger 1 collaboration

Wolfgang Rauch 1 collaboration

Christoph Scheffknecht 1 collaboration

Gunther Vogl 1 collaboration

Günther Weichlinger 1 collaboration

Andreas Otto Wagner 1 collaboration

Katarzyna Slipko 1 collaboration

Niki Popper 1 collaboration

Herbert Oberacher 1 collaboration

Heribert Insam 1 collaboration