Gryte Satas

Affiliations

Department of Computer Science, Brown University, Providence, RI 02912.
Department of Computer Science, Princeton University, Princeton, NJ 08540.

Publications (8)

SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.

Cell systems

Avec: Gryte Satas , Simone Zaccaria , Geoffrey Mon , Benjamin J Raphael

Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer.

bioRxiv : the preprint server for biology

Avec: Andrew McPherson , Ignacio Vázquez-García , Matthew A Myers , Matthew Zatzman , Duaa Al-Rawi , Adam Weiner , Samuel Freeman , Neeman Mohibullah , Gryte Satas , Marc J Williams , Nicholas Ceglia , Allen W Zhang , Jun Li , Jamie L P Lim , Michelle Wu , Seongmin Choi , Eliyahu Havasov , Diljot Grewal , Hongyu Shi , Minsoo Kim , Roland Schwarz , Tom Kaufmann , Khanh Ngoc Dinh , Florian Uhlitz , Julie Tran , Yushi Wu , Ruchi Patel , Satish Ramakrishnan , DooA Kim , Justin Clarke , Hunter Green , Emily Ali , Melody DiBona , Nancy Varice , Ritika Kundra , Vance Broach , Ginger J Gardner , Kara Long Roche , Yukio Sonoda , Oliver Zivanovic , Sarah H Kim , Rachel N Grisham , Ying L Liu , Agnes Viale , Nicole Rusk , Yulia Lakhman , Lora H Ellenson , Simon Tavaré , Samuel Aparicio , Dennis S Chi , Carol Aghajanian , Nadeem R Abu-Rustum , Claire F Friedman , Dmitriy Zamarin , Britta Weigelt , Samuel F Bakhoum , Sohrab P Shah

Tracking clonal evolution of drug resistance in ovarian cancer patients by exploiting structural variants in cfDNA.

bioRxiv : the preprint server for biology

Avec: Marc J Williams , Ignacio Vázquez-García , Grittney Tam , Michelle Wu , Nancy Varice , Eliyahu Havasov , Hongyu Shi , Gryte Satas , Hannah J Lees , Jake June-Koo Lee , Matthew A Myers , Matthew Zatzman , Nicole Rusk , Emily Ali , Ronak H Shah , Michael F Berger , Neeman Mohibullah , Yulia Lakhman , Dennis S Chi , Nadeem R Abu-Rustum , Carol Aghajanian , Andrew McPherson , Dmitriy Zamarin , Brian Loomis , Britta Weigelt , Claire F Friedman , Sohrab P Shah

CALDER: Inferring Phylogenetic Trees from Longitudinal Tumor Samples.

Cell systems

Avec: Matthew A Myers , Gryte Satas , Benjamin J Raphael

The Clonal Evolution of Metastatic Osteosarcoma as Shaped by Cisplatin Treatment.

Molecular cancer research : MCR

Avec: Samuel W Brady , Xiaotu Ma , Armita Bahrami , Gryte Satas , Gang Wu , Scott Newman , Michael Rusch , Daniel K Putnam , Heather L Mulder , Donald A Yergeau , Michael N Edmonson , John Easton , Ludmil B Alexandrov , Xiang Chen , Elaine R Mardis , Richard K Wilson , James R Downing , Alberto S Pappo , Benjamin J Raphael , Michael A Dyer , Jinghui Zhang

Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells.

Nature communications

Avec: Hongyu Shi , Marc J Williams , Gryte Satas , Adam C Weiner , Andrew McPherson , Sohrab P Shah

DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution.

Cell systems

Avec: Gryte Satas , Simone Zaccaria , Mohammed El-Kebir , Benjamin J Raphael

Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations.

bioRxiv : the preprint server for biology

Avec: Hongyu Shi , Marc J Williams , Gryte Satas , Adam C Weiner , Andrew McPherson , Sohrab P Shah

Réseau de co-auteurs

Benjamin J Raphael 4 collaborations

Andrew McPherson 4 collaborations

Marc J Williams 4 collaborations

Hongyu Shi 4 collaborations

Sohrab P Shah 4 collaborations

Matthew A Myers 3 collaborations

Simone Zaccaria 2 collaborations

Ignacio Vázquez-García 2 collaborations

Matthew Zatzman 2 collaborations

Neeman Mohibullah 2 collaborations

Michelle Wu 2 collaborations

Eliyahu Havasov 2 collaborations

Emily Ali 2 collaborations

Nancy Varice 2 collaborations

Nicole Rusk 2 collaborations

Yulia Lakhman 2 collaborations

Dennis S Chi 2 collaborations

Carol Aghajanian 2 collaborations

Nadeem R Abu-Rustum 2 collaborations

Claire F Friedman 2 collaborations

Dmitriy Zamarin 2 collaborations

Britta Weigelt 2 collaborations

Adam C Weiner 2 collaborations

Geoffrey Mon 1 collaboration

Duaa Al-Rawi 1 collaboration

Adam Weiner 1 collaboration

Samuel Freeman 1 collaboration

Nicholas Ceglia 1 collaboration

Allen W Zhang 1 collaboration

Jun Li 1 collaboration

Jamie L P Lim 1 collaboration

Seongmin Choi 1 collaboration

Diljot Grewal 1 collaboration

Minsoo Kim 1 collaboration

Roland Schwarz 1 collaboration

Tom Kaufmann 1 collaboration

Khanh Ngoc Dinh 1 collaboration

Florian Uhlitz 1 collaboration

Julie Tran 1 collaboration

Yushi Wu 1 collaboration

Ruchi Patel 1 collaboration

Satish Ramakrishnan 1 collaboration

DooA Kim 1 collaboration

Justin Clarke 1 collaboration

Hunter Green 1 collaboration

Melody DiBona 1 collaboration

Ritika Kundra 1 collaboration

Vance Broach 1 collaboration

Ginger J Gardner 1 collaboration

Kara Long Roche 1 collaboration

Yukio Sonoda 1 collaboration

Oliver Zivanovic 1 collaboration

Sarah H Kim 1 collaboration

Rachel N Grisham 1 collaboration

Ying L Liu 1 collaboration

Agnes Viale 1 collaboration

Lora H Ellenson 1 collaboration

Simon Tavaré 1 collaboration

Samuel Aparicio 1 collaboration

Samuel F Bakhoum 1 collaboration

Grittney Tam 1 collaboration

Hannah J Lees 1 collaboration

Jake June-Koo Lee 1 collaboration

Ronak H Shah 1 collaboration

Michael F Berger 1 collaboration

Brian Loomis 1 collaboration

Samuel W Brady 1 collaboration

Xiaotu Ma 1 collaboration

Armita Bahrami 1 collaboration

Gang Wu 1 collaboration

Scott Newman 1 collaboration

Michael Rusch 1 collaboration

Daniel K Putnam 1 collaboration

Heather L Mulder 1 collaboration

Donald A Yergeau 1 collaboration

Michael N Edmonson 1 collaboration

John Easton 1 collaboration

Ludmil B Alexandrov 1 collaboration

Xiang Chen 1 collaboration

Elaine R Mardis 1 collaboration

Richard K Wilson 1 collaboration

James R Downing 1 collaboration

Alberto S Pappo 1 collaboration

Michael A Dyer 1 collaboration

Jinghui Zhang 1 collaboration

Mohammed El-Kebir 1 collaboration