Isaac Shamie

Affiliations

Department of Pediatrics, University of California San Diego, San Diego, California.
The Novo Nordisk Foundation Center for Biosustainability, University of California San Diego, San Diego, California.

Publications (10)

Awakening dormant glycosyltransferases in CHO cells with CRISPRa.

Biotechnology and bioengineering

Avec: Karen Julie la Cour Karottki , Hooman Hefzi , Kai Xiong , Isaac Shamie , Anders Holmgaard Hansen , Songyuan Li , Lasse Ebdrup Pedersen , Shangzhong Li , Jae Seong Lee , Gyun Min Lee , Helene Faustrup Kildegaard , Nathan E Lewis

Reduced apoptosis in Chinese hamster ovary cells via optimized CRISPR interference.

Biotechnology and bioengineering

Avec: Kai Xiong , Kim Fabiano Marquart , Karen Julie la Cour Karottki , Shangzhong Li , Isaac Shamie , Jae Seong Lee , Signe Gerling , Nan Cher Yeo , Alejandro Chavez , Gyun Min Lee , Nathan E Lewis , Helene Faustrup Kildegaard

A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells.

NAR genomics and bioinformatics

Avec: Isaac Shamie , Sascha H Duttke , Karen J la Cour Karottki , Claudia Z Han , Anders H Hansen , Hooman Hefzi , Kai Xiong , Shangzhong Li , Samuel J Roth , Jenhan Tao , Gyun Min Lee , Christopher K Glass , Helene Faustrup Kildegaard , Christopher Benner , Nathan E Lewis

Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing.

BMC genomics

Avec: Benjamin P Kellman , Hratch M Baghdassarian , Tiziano Pramparo , Isaac Shamie , Vahid Gazestani , Arjana Begzati , Shangzhong Li , Srinivasa Nalabolu , Sarah Murray , Linda Lopez , Karen Pierce , Eric Courchesne , Nathan E Lewis

StanDep: Capturing transcriptomic variability improves context-specific metabolic models.

PLoS computational biology

Avec: Chintan J Joshi , Song-Min Schinn , Anne Richelle , Isaac Shamie , Eyleen J O'Rourke , Nathan E Lewis

Coarse behavioral context decoding.

Journal of neural engineering

Avec: Abdulwahab Alasfour , Paolo Gabriel , Xi Jiang , Isaac Shamie , Lucia Melloni , Thomas Thesen , Patricia Dugan , Daniel Friedman , Werner Doyle , Orin Devinsky , David Gonda , Shifteh Sattar , Sonya Wang , Eric Halgren , Vikash Gilja

Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models.

PLoS computational biology

Avec: Chintan J Joshi , Song-Min Schinn , Anne Richelle , Isaac Shamie , Eyleen J O'Rourke , Nathan E Lewis

Immune response to intravenous immunoglobulin in patients with Kawasaki disease and MIS-C.

The Journal of clinical investigation

Avec: Yanfang P Zhu , Isaac Shamie , Jamie C Lee , Cameron J Nowell , Weiqi Peng , Shiela Angulo , Linh Nn Le , Yushan Liu , Huilai Miao , Hainan Xiong , Cathleen J Pena , Elizabeth Moreno , Eric Griffis , Stephanie G Labou , Alessandra Franco , Lori Broderick , Hal M Hoffman , Chisato Shimizu , Nathan E Lewis , John T Kanegaye , Adriana H Tremoulet , Jane C Burns , Ben A Croker , Auteur inconnu

Spatiotemporal dynamics of human high gamma discriminate naturalistic behavioral states.

PLoS computational biology

Avec: Abdulwahab Alasfour , Paolo Gabriel , Xi Jiang , Isaac Shamie , Lucia Melloni , Thomas Thesen , Patricia Dugan , Daniel Friedman , Werner Doyle , Orin Devinsky , David Gonda , Shifteh Sattar , Sonya Wang , Eric Halgren , Vikash Gilja

Inferring a spatial code of cell-cell interactions across a whole animal body.

PLoS computational biology

Avec: Erick Armingol , Abbas Ghaddar , Chintan J Joshi , Hratch Baghdassarian , Isaac Shamie , Jason Chan , Hsuan-Lin Her , Samuel Berhanu , Anushka Dar , Fabiola Rodriguez-Armstrong , Olivia Yang , Eyleen J O'Rourke , Nathan E Lewis

Réseau de co-auteurs

Nathan E Lewis 8 collaborations

Shangzhong Li 4 collaborations

Kai Xiong 3 collaborations

Gyun Min Lee 3 collaborations

Helene Faustrup Kildegaard 3 collaborations

Chintan J Joshi 3 collaborations

Eyleen J O'Rourke 3 collaborations

Karen Julie la Cour Karottki 2 collaborations

Hooman Hefzi 2 collaborations

Jae Seong Lee 2 collaborations

Song-Min Schinn 2 collaborations

Anne Richelle 2 collaborations

Abdulwahab Alasfour 2 collaborations

Paolo Gabriel 2 collaborations

Xi Jiang 2 collaborations

Lucia Melloni 2 collaborations

Thomas Thesen 2 collaborations

Patricia Dugan 2 collaborations

Daniel Friedman 2 collaborations

Werner Doyle 2 collaborations

Orin Devinsky 2 collaborations

David Gonda 2 collaborations

Shifteh Sattar 2 collaborations

Sonya Wang 2 collaborations

Eric Halgren 2 collaborations

Vikash Gilja 2 collaborations

Anders Holmgaard Hansen 1 collaboration

Songyuan Li 1 collaboration

Lasse Ebdrup Pedersen 1 collaboration

Kim Fabiano Marquart 1 collaboration

Signe Gerling 1 collaboration

Nan Cher Yeo 1 collaboration

Alejandro Chavez 1 collaboration

Sascha H Duttke 1 collaboration

Karen J la Cour Karottki 1 collaboration

Claudia Z Han 1 collaboration

Anders H Hansen 1 collaboration

Samuel J Roth 1 collaboration

Jenhan Tao 1 collaboration

Christopher K Glass 1 collaboration

Christopher Benner 1 collaboration

Benjamin P Kellman 1 collaboration

Hratch M Baghdassarian 1 collaboration

Tiziano Pramparo 1 collaboration

Vahid Gazestani 1 collaboration

Arjana Begzati 1 collaboration

Srinivasa Nalabolu 1 collaboration

Sarah Murray 1 collaboration

Linda Lopez 1 collaboration

Karen Pierce 1 collaboration

Eric Courchesne 1 collaboration

Yanfang P Zhu 1 collaboration

Jamie C Lee 1 collaboration

Cameron J Nowell 1 collaboration

Weiqi Peng 1 collaboration

Shiela Angulo 1 collaboration

Linh Nn Le 1 collaboration

Yushan Liu 1 collaboration

Huilai Miao 1 collaboration

Hainan Xiong 1 collaboration

Cathleen J Pena 1 collaboration

Elizabeth Moreno 1 collaboration

Eric Griffis 1 collaboration

Stephanie G Labou 1 collaboration

Alessandra Franco 1 collaboration

Lori Broderick 1 collaboration

Hal M Hoffman 1 collaboration

Chisato Shimizu 1 collaboration

John T Kanegaye 1 collaboration

Adriana H Tremoulet 1 collaboration

Jane C Burns 1 collaboration

Ben A Croker 1 collaboration

None None 1 collaboration

Erick Armingol 1 collaboration

Abbas Ghaddar 1 collaboration

Hratch Baghdassarian 1 collaboration

Jason Chan 1 collaboration

Hsuan-Lin Her 1 collaboration

Samuel Berhanu 1 collaboration

Anushka Dar 1 collaboration

Fabiola Rodriguez-Armstrong 1 collaboration

Olivia Yang 1 collaboration