J Salse

Affiliations

INRAE/UCA UMR GDEC 1095. 5 Chemin de Beaulieu, F-63100 Clermont Ferrand, France.

Publications (17)

Episodes of gene flow and selection during the evolutionary history of domesticated barley.

BMC genomics

Avec: Peter Civáň , Konstantina Drosou , David Armisen-Gimenez , Wandrille Duchemin , Jérôme Salse , Terence A Brown

Tracing the ancestry of modern bread wheats.

Nature genetics

Avec: Caroline Pont , Thibault Leroy , Michael Seidel , Alessandro Tondelli , Wandrille Duchemin , David Armisen , Daniel Lang , Daniela Bustos-Korts , Nadia Goué , François Balfourier , Márta Molnár-Láng , Jacob Lage , Benjamin Kilian , Hakan Özkan , Darren Waite , Sarah Dyer , Thomas Letellier , Michael Alaux , Auteur inconnu , Joanne Russell , Beat Keller , Fred van Eeuwijk , Manuel Spannagl , Klaus F X Mayer , Robbie Waugh , Nils Stein , Luigi Cattivelli , Georg Haberer , Gilles Charmet , Jérôme Salse

A reference genome for pea provides insight into legume genome evolution.

Nature genetics

Avec: Jonathan Kreplak , Mohammed-Amin Madoui , Petr Cápal , Petr Novák , Karine Labadie , Grégoire Aubert , Philipp E Bayer , Krishna K Gali , Robert A Syme , Dorrie Main , Anthony Klein , Aurélie Bérard , Iva Vrbová , Cyril Fournier , Leo d'Agata , Caroline Belser , Wahiba Berrabah , Helena Toegelová , Zbyněk Milec , Jan Vrána , HueyTyng Lee , Ayité Kougbeadjo , Morgane Térézol , Cécile Huneau , Chala J Turo , Nacer Mohellibi , Pavel Neumann , Matthieu Falque , Karine Gallardo , Rebecca McGee , Bunyamin Tar'an , Abdelhafid Bendahmane , Jean-Marc Aury , Jacqueline Batley , Marie-Christine Le Paslier , Noel Ellis , Thomas D Warkentin , Clarice J Coyne , Jérome Salse , David Edwards , Judith Lichtenzveig , Jiří Macas , Jaroslav Doležel , Patrick Wincker , Judith Burstin

A Chromosome-Level Genome Assembly of the European Beech (

Frontiers in genetics

Avec: Bagdevi Mishra , Bartosz Ulaszewski , Joanna Meger , Jean-Marc Aury , Catherine Bodénès , Isabelle Lesur-Kupin , Markus Pfenninger , Corinne Da Silva , Deepak K Gupta , Erwan Guichoux , Katrin Heer , Céline Lalanne , Karine Labadie , Lars Opgenoorth , Sebastian Ploch , Grégoire Le Provost , Jérôme Salse , Ivan Scotti , Stefan Wötzel , Christophe Plomion , Jaroslaw Burczyk , Marco Thines

Strategies for breeding crops for future environments.

Trends in plant science

Avec: Jérôme Salse , Romain L Barnard , Claire Veneault-Fourrey , Hatem Rouached

The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution.

Nature plants

Avec: Tao Shi , Cécile Huneau , Yue Zhang , Yan Li , Jinming Chen , Jérôme Salse , Qingfeng Wang

SyntenyViewer: a comparative genomics-driven translational research tool.

Database : the journal of biological databases and curation

Avec: Raphael Flores , Cécile Huneau , Laura Burlot , Mathilde Lainé , Erik Kimmel , Cyril Pommier , Michael Alaux , Anne-Françoise Adam-Blondon , Caroline Pont , Hadi Quesneville , Jerome Salse

A Strategy for Studying Epigenetic Diversity in Natural Populations: Proof of Concept in Poplar and Oak.

Journal of experimental botany

Avec: I Lesur , O Rogier , M-D Sow , C Boury , A Duplan , A Garnier , A Senhaji-Rachik , P Civan , J Daron , A Delaunay , L Duvaux , V Benoit , E Guichoux , G Le Provost , E Sanou , C Ambroise , C Plomion , J Salse , V Segura , J Tost , S Maury

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality.

Nature communications

Avec: Bárbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol , Patrick Doumas , Erika Sallet , Davide Mancinotti , Sébastien Carrere , William Marande , Sandrine Arribat , Jean Keller , Cécile Huneau , Thomas Blein , Delphine Aimé , Malika Laguerre , Jemma Taylor , Veit Schubert , Matthew Nelson , Fernando Geu-Flores , Martin Crespi , Karine Gallardo , Pierre-Marc Delaux , Jérôme Salse , Hélène Bergès , Romain Guyot , Jérôme Gouzy , Benjamin Péret

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA.

Genome biology

Avec: Caroline Pont , Stefanie Wagner , Antoine Kremer , Ludovic Orlando , Christophe Plomion , Jerome Salse

Translational research from models to crops: comparative genomics for plant breeding.

Comptes rendus biologies

Avec: Jérôme Salse

Optical genome mapping for prenatal diagnosis: A prospective study.

Clinica chimica acta; international journal of clinical chemistry

Avec: Carole Goumy , Zangbéwendé Guy Ouedraogo , Gwendoline Soler , Eleonore Eymard-Pierre , Hélène Laurichesse , Amélie Delabaere , Denis Gallot , Pamela Bouchet , Isabelle Perthus , Céline Pebrel-Richard , Laetitia Gouas , Gaëlle Salaun , Jérôme Salse , Lauren Véronèse , Andrei Tchirkov

Identification of a major QTL and associated molecular marker for high arabinoxylan fibre in white wheat flour.

PloS one

Avec: Alison Lovegrove , Luzie U Wingen , Amy Plummer , Abigail Wood , Diana Passmore , Ondrej Kosik , Jackie Freeman , Rowan A C Mitchell , Kirsty Hassall , Mehmet Ulker , Karolina Tremmel-Bede , Marianna Rakszegi , Zoltán Bedő , Marie-Reine Perretant , Gilles Charmet , Caroline Pont , Jerome Salse , Michelle Leverington Waite , Simon Orford , Amanda Burridge , Till K Pellny , Peter R Shewry , Simon Griffiths

Population genomics of apricots unravels domestication history and adaptive events.

Nature communications

Avec: Alexis Groppi , Shuo Liu , Amandine Cornille , Stéphane Decroocq , Quynh Trang Bui , David Tricon , Corinne Cruaud , Sandrine Arribat , Caroline Belser , William Marande , Jérôme Salse , Cécile Huneau , Nathalie Rodde , Wassim Rhalloussi , Stéphane Cauet , Benjamin Istace , Erwan Denis , Sébastien Carrère , Jean-Marc Audergon , Guillaume Roch , Patrick Lambert , Tetyana Zhebentyayeva , Wei-Sheng Liu , Olivier Bouchez , Céline Lopez-Roques , Rémy-Félix Serre , Robert Debuchy , Joseph Tran , Patrick Wincker , Xilong Chen , Pierre Pétriacq , Aurélien Barre , Macha Nikolski , Jean-Marc Aury , Albert Glenn Abbott , Tatiana Giraud , Véronique Decroocq

Genomic data integration tutorial, a plant case study.

BMC genomics

Avec: Emile Mardoc , Mamadou Dia Sow , Sébastien Déjean , Jérôme Salse

Tracing 100 million years of grass genome evolutionary plasticity.

The Plant journal : for cell and molecular biology

Avec: Arnaud Bellec , Mamadou Dia Sow , Caroline Pont , Peter Civan , Emile Mardoc , Wandrille Duchemin , David Armisen , Cécile Huneau , Johanne Thévenin , Vanessa Vernoud , Nathalie Depège-Fargeix , Laurent Maunas , Brigitte Escale , Bertrand Dubreucq , Peter Rogowsky , Hélène Bergès , Jerome Salse

Low impact of polyploidization on the transcriptome of synthetic allohexaploid wheat.

BMC genomics

Avec: Meriem Banouh , David Armisen , Annaig Bouguennec , Cécile Huneau , Mamadou Dia Sow , Caroline Pont , Jérôme Salse , Peter Civáň

Réseau de co-auteurs

Jérôme Salse 11 collaborations

Cécile Huneau 7 collaborations

Caroline Pont 6 collaborations

Jerome Salse 4 collaborations

Wandrille Duchemin 3 collaborations

David Armisen 3 collaborations

Jean-Marc Aury 3 collaborations

Mamadou Dia Sow 3 collaborations

Peter Civáň 2 collaborations

Michael Alaux 2 collaborations

Gilles Charmet 2 collaborations

Karine Labadie 2 collaborations

Caroline Belser 2 collaborations

Karine Gallardo 2 collaborations

Patrick Wincker 2 collaborations

Christophe Plomion 2 collaborations

William Marande 2 collaborations

Sandrine Arribat 2 collaborations

Hélène Bergès 2 collaborations

Emile Mardoc 2 collaborations

Konstantina Drosou 1 collaboration

David Armisen-Gimenez 1 collaboration

Terence A Brown 1 collaboration

Thibault Leroy 1 collaboration

Michael Seidel 1 collaboration

Alessandro Tondelli 1 collaboration

Daniel Lang 1 collaboration

Daniela Bustos-Korts 1 collaboration

Nadia Goué 1 collaboration

François Balfourier 1 collaboration

Márta Molnár-Láng 1 collaboration

Jacob Lage 1 collaboration

Benjamin Kilian 1 collaboration

Hakan Özkan 1 collaboration

Darren Waite 1 collaboration

Sarah Dyer 1 collaboration

Thomas Letellier 1 collaboration

None None 1 collaboration

Joanne Russell 1 collaboration

Beat Keller 1 collaboration

Fred van Eeuwijk 1 collaboration

Manuel Spannagl 1 collaboration

Klaus F X Mayer 1 collaboration

Robbie Waugh 1 collaboration

Nils Stein 1 collaboration

Luigi Cattivelli 1 collaboration

Georg Haberer 1 collaboration

Jonathan Kreplak 1 collaboration

Mohammed-Amin Madoui 1 collaboration

Petr Cápal 1 collaboration

Petr Novák 1 collaboration

Grégoire Aubert 1 collaboration

Philipp E Bayer 1 collaboration

Krishna K Gali 1 collaboration

Robert A Syme 1 collaboration

Dorrie Main 1 collaboration

Anthony Klein 1 collaboration

Aurélie Bérard 1 collaboration

Iva Vrbová 1 collaboration

Cyril Fournier 1 collaboration

Leo d'Agata 1 collaboration

Wahiba Berrabah 1 collaboration

Helena Toegelová 1 collaboration

Zbyněk Milec 1 collaboration

Jan Vrána 1 collaboration

HueyTyng Lee 1 collaboration

Ayité Kougbeadjo 1 collaboration

Morgane Térézol 1 collaboration

Chala J Turo 1 collaboration

Nacer Mohellibi 1 collaboration

Pavel Neumann 1 collaboration

Matthieu Falque 1 collaboration

Rebecca McGee 1 collaboration

Bunyamin Tar'an 1 collaboration

Abdelhafid Bendahmane 1 collaboration

Jacqueline Batley 1 collaboration

Marie-Christine Le Paslier 1 collaboration

Noel Ellis 1 collaboration

Thomas D Warkentin 1 collaboration

Clarice J Coyne 1 collaboration

Jérome Salse 1 collaboration

David Edwards 1 collaboration

Judith Lichtenzveig 1 collaboration

Jiří Macas 1 collaboration

Jaroslav Doležel 1 collaboration

Judith Burstin 1 collaboration

Bagdevi Mishra 1 collaboration

Bartosz Ulaszewski 1 collaboration

Joanna Meger 1 collaboration

Catherine Bodénès 1 collaboration

Isabelle Lesur-Kupin 1 collaboration

Markus Pfenninger 1 collaboration

Corinne Da Silva 1 collaboration

Deepak K Gupta 1 collaboration

Erwan Guichoux 1 collaboration

Katrin Heer 1 collaboration

Céline Lalanne 1 collaboration

Lars Opgenoorth 1 collaboration

Sebastian Ploch 1 collaboration

Grégoire Le Provost 1 collaboration

Ivan Scotti 1 collaboration

Stefan Wötzel 1 collaboration

Jaroslaw Burczyk 1 collaboration

Marco Thines 1 collaboration

Romain L Barnard 1 collaboration

Claire Veneault-Fourrey 1 collaboration

Hatem Rouached 1 collaboration

Tao Shi 1 collaboration

Yue Zhang 1 collaboration

Yan Li 1 collaboration

Jinming Chen 1 collaboration

Qingfeng Wang 1 collaboration

Raphael Flores 1 collaboration

Laura Burlot 1 collaboration

Mathilde Lainé 1 collaboration

Erik Kimmel 1 collaboration

Cyril Pommier 1 collaboration

Anne-Françoise Adam-Blondon 1 collaboration

Hadi Quesneville 1 collaboration

I Lesur 1 collaboration

O Rogier 1 collaboration

M-D Sow 1 collaboration

C Boury 1 collaboration

A Duplan 1 collaboration

A Garnier 1 collaboration

A Senhaji-Rachik 1 collaboration

P Civan 1 collaboration

J Daron 1 collaboration

A Delaunay 1 collaboration

L Duvaux 1 collaboration

V Benoit 1 collaboration

E Guichoux 1 collaboration

G Le Provost 1 collaboration

E Sanou 1 collaboration

C Ambroise 1 collaboration

C Plomion 1 collaboration

V Segura 1 collaboration

J Tost 1 collaboration

S Maury 1 collaboration

Bárbara Hufnagel 1 collaboration

André Marques 1 collaboration

Alexandre Soriano 1 collaboration

Laurence Marquès 1 collaboration

Fanchon Divol 1 collaboration

Patrick Doumas 1 collaboration

Erika Sallet 1 collaboration

Davide Mancinotti 1 collaboration

Sébastien Carrere 1 collaboration

Jean Keller 1 collaboration

Thomas Blein 1 collaboration

Delphine Aimé 1 collaboration

Malika Laguerre 1 collaboration

Jemma Taylor 1 collaboration

Veit Schubert 1 collaboration

Matthew Nelson 1 collaboration

Fernando Geu-Flores 1 collaboration

Martin Crespi 1 collaboration

Pierre-Marc Delaux 1 collaboration

Romain Guyot 1 collaboration

Jérôme Gouzy 1 collaboration

Benjamin Péret 1 collaboration

Stefanie Wagner 1 collaboration

Antoine Kremer 1 collaboration

Ludovic Orlando 1 collaboration

Carole Goumy 1 collaboration

Zangbéwendé Guy Ouedraogo 1 collaboration

Gwendoline Soler 1 collaboration

Eleonore Eymard-Pierre 1 collaboration

Hélène Laurichesse 1 collaboration

Amélie Delabaere 1 collaboration

Denis Gallot 1 collaboration

Pamela Bouchet 1 collaboration

Isabelle Perthus 1 collaboration

Céline Pebrel-Richard 1 collaboration

Laetitia Gouas 1 collaboration

Gaëlle Salaun 1 collaboration

Lauren Véronèse 1 collaboration

Andrei Tchirkov 1 collaboration

Alison Lovegrove 1 collaboration

Luzie U Wingen 1 collaboration

Amy Plummer 1 collaboration

Abigail Wood 1 collaboration

Diana Passmore 1 collaboration

Ondrej Kosik 1 collaboration

Jackie Freeman 1 collaboration

Rowan A C Mitchell 1 collaboration

Kirsty Hassall 1 collaboration

Mehmet Ulker 1 collaboration

Karolina Tremmel-Bede 1 collaboration

Marianna Rakszegi 1 collaboration

Zoltán Bedő 1 collaboration

Marie-Reine Perretant 1 collaboration

Michelle Leverington Waite 1 collaboration

Simon Orford 1 collaboration

Amanda Burridge 1 collaboration

Till K Pellny 1 collaboration

Peter R Shewry 1 collaboration

Simon Griffiths 1 collaboration

Alexis Groppi 1 collaboration

Shuo Liu 1 collaboration

Amandine Cornille 1 collaboration

Stéphane Decroocq 1 collaboration

Quynh Trang Bui 1 collaboration

David Tricon 1 collaboration

Corinne Cruaud 1 collaboration

Nathalie Rodde 1 collaboration

Wassim Rhalloussi 1 collaboration

Stéphane Cauet 1 collaboration

Benjamin Istace 1 collaboration

Erwan Denis 1 collaboration

Sébastien Carrère 1 collaboration

Jean-Marc Audergon 1 collaboration

Guillaume Roch 1 collaboration

Patrick Lambert 1 collaboration

Tetyana Zhebentyayeva 1 collaboration

Wei-Sheng Liu 1 collaboration

Olivier Bouchez 1 collaboration

Céline Lopez-Roques 1 collaboration

Rémy-Félix Serre 1 collaboration

Robert Debuchy 1 collaboration

Joseph Tran 1 collaboration

Xilong Chen 1 collaboration

Pierre Pétriacq 1 collaboration

Aurélien Barre 1 collaboration

Macha Nikolski 1 collaboration

Albert Glenn Abbott 1 collaboration

Tatiana Giraud 1 collaboration

Véronique Decroocq 1 collaboration

Sébastien Déjean 1 collaboration

Arnaud Bellec 1 collaboration

Peter Civan 1 collaboration

Johanne Thévenin 1 collaboration

Vanessa Vernoud 1 collaboration

Nathalie Depège-Fargeix 1 collaboration

Laurent Maunas 1 collaboration

Brigitte Escale 1 collaboration

Bertrand Dubreucq 1 collaboration

Peter Rogowsky 1 collaboration

Meriem Banouh 1 collaboration

Annaig Bouguennec 1 collaboration