Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA.


Journal

Genome biology
ISSN: 1474-760X
Titre abrégé: Genome Biol
Pays: England
ID NLM: 100960660

Informations de publication

Date de publication:
11 02 2019
Historique:
entrez: 13 2 2019
pubmed: 13 2 2019
medline: 22 3 2019
Statut: epublish

Résumé

How contemporary plant genomes originated and evolved is a fascinating question. One approach uses reference genomes from extant species to reconstruct the sequence and structure of their common ancestors over deep timescales. A second approach focuses on the direct identification of genomic changes at a shorter timescale by sequencing ancient DNA preserved in subfossil remains. Merged within the nascent field of paleogenomics, these complementary approaches provide insights into the evolutionary forces that shaped the organization and regulation of modern genomes and open novel perspectives in fostering genetic gain in breeding programs and establishing tools to predict future population changes in response to anthropogenic pressure and global warming.

Identifiants

pubmed: 30744646
doi: 10.1186/s13059-019-1627-1
pii: 10.1186/s13059-019-1627-1
pmc: PMC6369560
doi:

Substances chimiques

DNA, Ancient 0
DNA, Plant 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

29

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Auteurs

Caroline Pont (C)

INRA-UCA UMR 1095 Génétique Diversité et Ecophysiologie des Céréales, 63100, Clermont-Ferrand, France.

Stefanie Wagner (S)

Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, allées Jules Guesde, Bâtiment A, 31000, Toulouse, France.
INRA-Université Bordeaux UMR1202, Biodiversité Gènes et Communautés, 33610, Cestas, France.

Antoine Kremer (A)

INRA-Université Bordeaux UMR1202, Biodiversité Gènes et Communautés, 33610, Cestas, France.

Ludovic Orlando (L)

Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, CNRS UMR 5288, allées Jules Guesde, Bâtiment A, 31000, Toulouse, France.
Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade, 1350K, Copenhagen, Denmark.

Christophe Plomion (C)

INRA-Université Bordeaux UMR1202, Biodiversité Gènes et Communautés, 33610, Cestas, France.

Jerome Salse (J)

INRA-UCA UMR 1095 Génétique Diversité et Ecophysiologie des Céréales, 63100, Clermont-Ferrand, France. jerome.salse@inra.fr.

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Classifications MeSH