Jiri Sponer

Affiliations

Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic; Department of Physical Chemistry, Faculty of Science, Regional Centre of Advanced Technologies and Materials, Palacky University Olomouc, Olomouc, Czech Republic. Electronic address: sponer@ncbr.muni.cz.

Publications (22)

Combining NMR Spectroscopy and Molecular Dynamic Simulations to Solve and Analyze the Structure of Protein-RNA Complexes.

Methods in enzymology

Avec: Sebastien Campagne , Miroslav Krepl , Jiri Sponer , Frederic H-T Allain

A Computational Quantum-Based Perspective on the Molecular Origins of Life's Building Blocks.

Entropy (Basel, Switzerland)

Avec: Gabriele Amante , Judit E Sponer , Jiri Sponer , Franz Saija , Giuseppe Cassone

Molecules (Basel, Switzerland)

Avec: Giuseppe Cassone , Adriano Sofia , Jiri Sponer , A Marco Saitta , Franz Saija

Enhanced conductivity of water at the electrified air-water interface: a DFT-MD characterization.

Physical chemistry chemical physics : PCCP

Avec: Fabrizio Creazzo , Simone Pezzotti , Sana Bougueroua , Alessandra Serva , Jiri Sponer , Franz Saija , Giuseppe Cassone , Marie-Pierre Gaigeot

Electrofreezing of Liquid Ammonia.

The journal of physical chemistry letters

Avec: Giuseppe Cassone , Jiri Sponer , Judit E Sponer , Franz Saija

DNA Quadruplex Structure with a Unique Cation Dependency.

Angewandte Chemie (International ed. in English)

Avec: Martin Gajarsky , Petr Stadlbauer , Jiri Sponer , Anne Cucchiarini , Michaela Dobrovolna , Vaclav Brazda , Jean-Louis Mergny , Lukas Trantirek , Martina Lenarcic Zivkovic

Ab initio spectroscopy of water under electric fields.

Physical chemistry chemical physics : PCCP

Avec: Giuseppe Cassone , Jiri Sponer , Sebastiano Trusso , Franz Saija

Prebiotic Route to Thymine from Formamide-A Combined Experimental-Theoretical Study.

Molecules (Basel, Switzerland)

Avec: Lukáš Petera , Klaudia Mrazikova , Lukas Nejdl , Kristyna Zemankova , Marketa Vaculovicova , Adam Pastorek , Svatopluk Civis , Petr Kubelik , Alan Heays , Giuseppe Cassone , Jiri Sponer , Martin Ferus , Judit Sponer

Structural and dynamic effects of pseudouridine modifications on noncanonical interactions in RNA.

RNA (New York, N.Y.)

Avec: Jennifer Vögele , Elke Duchardt-Ferner , Holger Kruse , Zhengyue Zhang , Jiri Sponer , Miroslav Krepl , Jens Wöhnert

Molecular Simulations to Investigate the Impact of N6-Methylation in RNA Recognition: Improving Accuracy and Precision of Binding Free Energy Prediction.

The journal of physical chemistry. B

Avec: Valerio Piomponi , Miroslav Krepl , Jiri Sponer , Giovanni Bussi

Arsenic-nucleotides interactions: an experimental and computational investigation.

Dalton transactions (Cambridge, England : 2003)

Avec: Giuseppe Cassone , Donatella Chillè , Viviana Mollica Nardo , Ottavia Giuffrè , Rosina Celeste Ponterio , Jiri Sponer , Sebastiano Trusso , Franz Saija , Claudia Foti

Removal of As(III) from Biological Fluids: Mono- versus Dithiolic Ligands.

Chemical research in toxicology

Avec: Donatella Chillè , Giuseppe Cassone , Fausta Giacobello , Ottavia Giuffrè , Viviana Mollica Nardo , Rosina C Ponterio , Franz Saija , Jiri Sponer , Sebastiano Trusso , Claudia Foti

Interactions between cyclic nucleotides and common cations: an ab initio molecular dynamics study.

Physical chemistry chemical physics : PCCP

Avec: Giuseppe Cassone , Holger Kruse , Jiri Sponer

Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing.

Nature communications

Avec: Antoine Cléry , Miroslav Krepl , Cristina K X Nguyen , Ahmed Moursy , Hadi Jorjani , Maria Katsantoni , Michal Okoniewski , Nitish Mittal , Mihaela Zavolan , Jiri Sponer , Frédéric H-T Allain

MD simulations reveal the basis for dynamic assembly of Hfq-RNA complexes.

The Journal of biological chemistry

Avec: Miroslav Krepl , Tom Dendooven , Ben F Luisi , Jiri Sponer

Short but Weak: The Z-DNA Lone-Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii.

Angewandte Chemie (International ed. in English)

Avec: Holger Kruse , Klaudia Mrazikova , Luigi D'Ascenzo , Jiri Sponer , Pascal Auffinger

Interaction between As(III) and Simple Thioacids in Water: An Experimental and ab Initio Molecular Dynamics Investigation.

The journal of physical chemistry. B

Avec: Giuseppe Cassone , Donatella Chillè , Fausta Giacobello , Ottavia Giuffrè , Viviana Mollica Nardo , Rosina C Ponterio , Franz Saija , Jiri Sponer , Sebastiano Trusso , Claudia Foti

Electric-Field-Induced Effects on the Dipole Moment and Vibrational Modes of the Centrosymmetric Indigo Molecule.

The journal of physical chemistry. A

Avec: Viviana Mollica Nardo , Giuseppe Cassone , Rosina Celeste Ponterio , Franz Saija , Jiri Sponer , Matteo Tommasini , Sebastiano Trusso

Physical chemistry chemical physics : PCCP

Avec: Emanuele Previti , Claudia Foti , Ottavia Giuffrè , Franz Saija , Jiri Sponer , Giuseppe Cassone

Molecular dissociation and proton transfer in aqueous methane solution under an electric field.

Physical chemistry chemical physics : PCCP

Avec: Giuseppe Cassone , Jiri Sponer , Franz Saija

A Cr

Physical chemistry chemical physics : PCCP

Avec: Yuvam Bhateja , Ritam Ghosh , Jiri Sponer , Sanhita Majumdar , Giuseppe Cassone

The Reactivity-Enhancing Role of Water Clusters in Ammonia Aqueous Solutions.

The journal of physical chemistry letters

Avec: Giuseppe Cassone , Franz Saija , Jiri Sponer , Sason Shaik

Réseau de co-auteurs

Giuseppe Cassone 15 collaborations

Franz Saija 12 collaborations

Miroslav Krepl 5 collaborations

Sebastiano Trusso 5 collaborations

Viviana Mollica Nardo 4 collaborations

Ottavia Giuffrè 4 collaborations

Claudia Foti 4 collaborations

Holger Kruse 3 collaborations

Donatella Chillè 3 collaborations

Judit E Sponer 2 collaborations

Klaudia Mrazikova 2 collaborations

Rosina Celeste Ponterio 2 collaborations

Fausta Giacobello 2 collaborations

Rosina C Ponterio 2 collaborations

Sebastien Campagne 1 collaboration

Frederic H-T Allain 1 collaboration

Gabriele Amante 1 collaboration

Adriano Sofia 1 collaboration

A Marco Saitta 1 collaboration

Fabrizio Creazzo 1 collaboration

Simone Pezzotti 1 collaboration

Sana Bougueroua 1 collaboration

Alessandra Serva 1 collaboration

Marie-Pierre Gaigeot 1 collaboration

Martin Gajarsky 1 collaboration

Petr Stadlbauer 1 collaboration

Anne Cucchiarini 1 collaboration

Michaela Dobrovolna 1 collaboration

Vaclav Brazda 1 collaboration

Jean-Louis Mergny 1 collaboration

Lukas Trantirek 1 collaboration

Martina Lenarcic Zivkovic 1 collaboration

Lukáš Petera 1 collaboration

Lukas Nejdl 1 collaboration

Kristyna Zemankova 1 collaboration

Marketa Vaculovicova 1 collaboration

Adam Pastorek 1 collaboration

Svatopluk Civis 1 collaboration

Petr Kubelik 1 collaboration

Alan Heays 1 collaboration

Martin Ferus 1 collaboration

Judit Sponer 1 collaboration

Jennifer Vögele 1 collaboration

Elke Duchardt-Ferner 1 collaboration

Zhengyue Zhang 1 collaboration

Jens Wöhnert 1 collaboration

Valerio Piomponi 1 collaboration

Giovanni Bussi 1 collaboration

Antoine Cléry 1 collaboration

Cristina K X Nguyen 1 collaboration

Ahmed Moursy 1 collaboration

Hadi Jorjani 1 collaboration

Maria Katsantoni 1 collaboration

Michal Okoniewski 1 collaboration

Nitish Mittal 1 collaboration

Mihaela Zavolan 1 collaboration

Frédéric H-T Allain 1 collaboration

Tom Dendooven 1 collaboration

Ben F Luisi 1 collaboration

Luigi D'Ascenzo 1 collaboration

Pascal Auffinger 1 collaboration

Matteo Tommasini 1 collaboration

Emanuele Previti 1 collaboration

Yuvam Bhateja 1 collaboration

Ritam Ghosh 1 collaboration

Sanhita Majumdar 1 collaboration

Sason Shaik 1 collaboration