Prebiotic Route to Thymine from Formamide-A Combined Experimental-Theoretical Study.

formamide origin of life prebiotic chemistry thymine uracil

Journal

Molecules (Basel, Switzerland)
ISSN: 1420-3049
Titre abrégé: Molecules
Pays: Switzerland
ID NLM: 100964009

Informations de publication

Date de publication:
13 Apr 2021
Historique:
received: 01 03 2021
revised: 29 03 2021
accepted: 06 04 2021
entrez: 30 4 2021
pubmed: 1 5 2021
medline: 25 5 2021
Statut: epublish

Résumé

Synthesis of RNA nucleobases from formamide is one of the recurring topics of prebiotic chemistry research. Earlier reports suggest that thymine, the substitute for uracil in DNA, may also be synthesized from formamide in the presence of catalysts enabling conversion of formamide to formaldehyde. In the current paper, we show that to a lesser extent conversion of uracil to thymine may occur even in the absence of catalysts. This is enabled by the presence of formic acid in the reaction mixture that forms as the hydrolysis product of formamide. Under the reaction conditions of our study, the disproportionation of formic acid may produce formaldehyde that hydroxymethylates uracil in the first step of the conversion process. The experiments are supplemented by quantum chemical modeling of the reaction pathway, supporting the plausibility of the mechanism suggested by Saladino and coworkers.

Identifiants

pubmed: 33924594
pii: molecules26082248
doi: 10.3390/molecules26082248
pmc: PMC8069957
pii:
doi:

Substances chimiques

Formamides 0
formamide 4781T907ZS
Uracil 56HH86ZVCT
Thymine QR26YLT7LT

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Grantová Agentura České Republiky
ID : 19-03314S

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Auteurs

Lukáš Petera (L)

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, CZ 18223 Prague 8, Czech Republic.

Klaudia Mrazikova (K)

Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, CZ 61265 Brno, Czech Republic.

Lukas Nejdl (L)

Department of Chemistry and Biochemistry, Mendel University in Brno, Zemědělská 1, CZ 61300 Brno, Czech Republic.
Central European Institute of Technology, Brno University of Technology, Purkynova 123, CZ 61200 Brno, Czech Republic.

Kristyna Zemankova (K)

Department of Chemistry and Biochemistry, Mendel University in Brno, Zemědělská 1, CZ 61300 Brno, Czech Republic.

Marketa Vaculovicova (M)

Department of Chemistry and Biochemistry, Mendel University in Brno, Zemědělská 1, CZ 61300 Brno, Czech Republic.
Central European Institute of Technology, Brno University of Technology, Purkynova 123, CZ 61200 Brno, Czech Republic.

Adam Pastorek (A)

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, CZ 18223 Prague 8, Czech Republic.

Svatopluk Civis (S)

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, CZ 18223 Prague 8, Czech Republic.

Petr Kubelik (P)

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, CZ 18223 Prague 8, Czech Republic.

Alan Heays (A)

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, CZ 18223 Prague 8, Czech Republic.

Giuseppe Cassone (G)

Institute for Chemical-Physical Processes, Italian National Research Council (IPCF-CNR), Viale Ferdinando Stagno d'Alcontres 37, 98158 Messina, Italy.

Jiri Sponer (J)

Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, CZ 61265 Brno, Czech Republic.

Martin Ferus (M)

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, CZ 18223 Prague 8, Czech Republic.

Judit Sponer (J)

Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, CZ 61265 Brno, Czech Republic.

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Classifications MeSH