Joerg Fallmann

Affiliations

Department of Computer Science and Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany.

Publications (24)

Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery.

Genome medicine

Avec: Rima M Chakaroun , Lucas Massier , Anna Heintz-Buschart , Nedal Said , Joerg Fallmann , Alyce Crane , Tatjana Schütz , Arne Dietrich , Matthias Blüher , Michael Stumvoll , Niculina Musat , Peter Kovacs

Application of RtcB ligase to monitor self-cleaving ribozyme activity by RNA-seq.

Biological chemistry

Avec: V Janett Olzog , Lena I Freist , Robin Goldmann , Jörg Fallmann , Christina E Weinberg

Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution.

Genome biology and evolution

Avec: Iuliia Ozerova , Jörg Fallmann , Mario Mörl , Matthias Bernt , Sonja J Prohaska , Peter F Stadler

LOTTE-seq (Long hairpin oligonucleotide based tRNA high-throughput sequencing): specific selection of tRNAs with 3'-CCA end for high-throughput sequencing.

RNA biology

Avec: Lieselotte Erber , Anne Hoffmann , Jörg Fallmann , Heike Betat , Peter F Stadler , Mario Mörl

Automatic curation of large comparative animal MicroRNA datasets.

Bioinformatics (Oxford, England)

Avec: Ali M Yazbeck , Peter F Stadler , Kifah Tout , Jörg Fallmann

The RNA workbench 2.0: next generation RNA data analysis.

Nucleic acids research

Avec: Jörg Fallmann , Pavankumar Videm , Andrea Bagnacani , Bérénice Batut , Maria A Doyle , Tomas Klingstrom , Florian Eggenhofer , Peter F Stadler , Rolf Backofen , Björn Grüning

Glomerular-tubular crosstalk via cold shock Y-box binding protein-1 in the kidney.

Kidney international

Avec: Rajiv Rana , Jayakumar Manoharan , Ahmed Elwakiel , Silke Zimmermann , Jonathan A Lindquist , Dheerendra Gupta , Moh'd Mohanad Al-Dabet , Ihsan Gadi , Jörg Fallmann , Kunal Singh , Anubhuti Gupta , Ronald Biemann , Sabine Brandt , Bekas Alo , Paul Kluge , Ravindra Garde , Christina Lamers , Khurrum Shahzad , Georg Künze , Shrey Kohli , Peter R Mertens , Berend Isermann

Tailored machine learning models for functional RNA detection in genome-wide screens.

NAR genomics and bioinformatics

Avec: Christopher Klapproth , Siegfried Zötzsche , Felix Kühnl , Jörg Fallmann , Peter F Stadler , Sven Findeiß

Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes.

Gut

Avec: Lucas Massier , Rima Chakaroun , Shirin Tabei , Alyce Crane , Konrad David Didt , Jörg Fallmann , Martin von Bergen , Sven-Bastiaan Haange , Henrike Heyne , Michael Stumvoll , Martin Gericke , Arne Dietrich , Matthias Blüher , Niculina Musat , Peter Kovacs

cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3'

RNA biology

Avec: V Janett Olzog , Christiane Gärtner , Peter F Stadler , Jörg Fallmann , Christina E Weinberg

Cas1 and Fen1 Display Equivalent Functions During Archaeal DNA Repair.

Frontiers in microbiology

Avec: Julia Wörtz , Victoria Smith , Jörg Fallmann , Sabine König , Tharani Thuraisingam , Paul Walther , Henning Urlaub , Peter F Stadler , Thorsten Allers , Frank Hille , Anita Marchfelder

Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN.

Nature communications

Avec: Steffen Fuchs , Clara Danßmann , Filippos Klironomos , Annika Winkler , Jörg Fallmann , Louisa-Marie Kruetzfeldt , Annabell Szymansky , Julian Naderi , Stephan H Bernhart , Laura Grunewald , Konstantin Helmsauer , Elias Rodriguez-Fos , Marieluise Kirchner , Philipp Mertins , Kathy Astrahantseff , Christin Suenkel , Joern Toedling , Fabienne Meggetto , Marc Remke , Peter F Stadler , Patrick Hundsdoerfer , Hedwig E Deubzer , Annette Künkele , Peter Lang , Jörg Fuchs , Anton G Henssen , Angelika Eggert , Nikolaus Rajewsky , Falk Hertwig , Johannes H Schulte

RNA interaction format: a general data format for RNA interactions.

Bioinformatics (Oxford, England)

Avec: Richard A Schäfer , Dominik Rabsch , Guillaume E Scholz , Peter F Stadler , Wolfgang R Hess , Rolf Backofen , Jörg Fallmann , Björn Voß

Alzheimer-related genes show accelerated evolution.

Molecular psychiatry

Avec: Anne Nitsche , Christian Arnold , Uwe Ueberham , Kristin Reiche , Jörg Fallmann , Jörg Hackermüller , Friedemann Horn , Peter F Stadler , Thomas Arendt

Common Features in lncRNA Annotation and Classification: A Survey.

Non-coding RNA

Avec: Christopher Klapproth , Rituparno Sen , Peter F Stadler , Sven Findeiß , Jörg Fallmann

Are spliced ncRNA host genes distinct classes of lncRNAs?

Theory in biosciences = Theorie in den Biowissenschaften

Avec: Rituparno Sen , Jörg Fallmann , Maria Emília M T Walter , Peter F Stadler

LazyB: fast and cheap genome assembly.

Algorithms for molecular biology : AMB

Avec: Thomas Gatter , Sarah von Löhneysen , Jörg Fallmann , Polina Drozdova , Tom Hartmann , Peter F Stadler

Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis.

Journal of personalized medicine

Avec: Christiane Gärtner , Jörg Fallmann , Peter F Stadler , Thorsten Kaiser , Sarah J Berkemer

miRNAture-Computational Detection of microRNA Candidates.

Genes

Avec: Cristian A Velandia-Huerto , Jörg Fallmann , Peter F Stadler

Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing.

Genome biology

Avec: Simon M Hoser , Anne Hoffmann , Andreas Meindl , Maximilian Gamper , Jörg Fallmann , Stephan H Bernhart , Lisa Müller , Melanie Ploner , Matthias Misslinger , Leopold Kremser , Herbert Lindner , Stephan Geley , Heiner Schaal , Peter F Stadler , Alexander Huettenhofer

MCPIP1 ribonuclease can bind and cleave

RNA biology

Avec: Iwona Nowak , Elżbieta Boratyn , Sebastian Student , Stephan F Bernhart , Jörg Fallmann , Małgorzata Durbas , Peter F Stadler , Hanna Rokita

Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer's disease.

Scientific reports

Avec: Natasha Andressa Nogueira Jorge , Uwe Ueberham , Mara Knobloch , Peter F Stadler , Jörg Fallmann , Thomas Arendt

The Genome of the "Sea Vomit"

Life (Basel, Switzerland)

Avec: Ernesto Parra-Rincón , Cristian A Velandia-Huerto , Adriaan Gittenberger , Jörg Fallmann , Thomas Gatter , Federico D Brown , Peter F Stadler , Clara I Bermúdez-Santana

Temperature-Dependent tRNA Modifications in Bacillales.

International journal of molecular sciences

Avec: Anne Hoffmann , Christian Lorenz , Jörg Fallmann , Philippe Wolff , Antony Lechner , Heike Betat , Mario Mörl , Peter F Stadler

Réseau de co-auteurs

Jörg Fallmann 23 collaborations

Peter F Stadler 20 collaborations

Mario Mörl 3 collaborations

Anne Hoffmann 3 collaborations

Lucas Massier 2 collaborations

Alyce Crane 2 collaborations

Arne Dietrich 2 collaborations

Matthias Blüher 2 collaborations

Michael Stumvoll 2 collaborations

Niculina Musat 2 collaborations

Peter Kovacs 2 collaborations

V Janett Olzog 2 collaborations

Christina E Weinberg 2 collaborations

Heike Betat 2 collaborations

Rolf Backofen 2 collaborations

Christopher Klapproth 2 collaborations

Sven Findeiß 2 collaborations

Christiane Gärtner 2 collaborations

Stephan H Bernhart 2 collaborations

Uwe Ueberham 2 collaborations

Thomas Arendt 2 collaborations

Rituparno Sen 2 collaborations

Thomas Gatter 2 collaborations

Cristian A Velandia-Huerto 2 collaborations

Rima M Chakaroun 1 collaboration

Anna Heintz-Buschart 1 collaboration

Nedal Said 1 collaboration

Tatjana Schütz 1 collaboration

Lena I Freist 1 collaboration

Robin Goldmann 1 collaboration

Iuliia Ozerova 1 collaboration

Matthias Bernt 1 collaboration

Sonja J Prohaska 1 collaboration

Lieselotte Erber 1 collaboration

Ali M Yazbeck 1 collaboration

Kifah Tout 1 collaboration

Pavankumar Videm 1 collaboration

Andrea Bagnacani 1 collaboration

Bérénice Batut 1 collaboration

Maria A Doyle 1 collaboration

Tomas Klingstrom 1 collaboration

Florian Eggenhofer 1 collaboration

Björn Grüning 1 collaboration

Rajiv Rana 1 collaboration

Jayakumar Manoharan 1 collaboration

Ahmed Elwakiel 1 collaboration

Silke Zimmermann 1 collaboration

Jonathan A Lindquist 1 collaboration

Dheerendra Gupta 1 collaboration

Moh'd Mohanad Al-Dabet 1 collaboration

Ihsan Gadi 1 collaboration

Kunal Singh 1 collaboration

Anubhuti Gupta 1 collaboration

Ronald Biemann 1 collaboration

Sabine Brandt 1 collaboration

Bekas Alo 1 collaboration

Paul Kluge 1 collaboration

Ravindra Garde 1 collaboration

Christina Lamers 1 collaboration

Khurrum Shahzad 1 collaboration

Georg Künze 1 collaboration

Shrey Kohli 1 collaboration

Peter R Mertens 1 collaboration

Berend Isermann 1 collaboration

Siegfried Zötzsche 1 collaboration

Felix Kühnl 1 collaboration

Rima Chakaroun 1 collaboration

Shirin Tabei 1 collaboration

Konrad David Didt 1 collaboration

Martin von Bergen 1 collaboration

Sven-Bastiaan Haange 1 collaboration

Henrike Heyne 1 collaboration

Martin Gericke 1 collaboration

Julia Wörtz 1 collaboration

Victoria Smith 1 collaboration

Sabine König 1 collaboration

Tharani Thuraisingam 1 collaboration

Paul Walther 1 collaboration

Henning Urlaub 1 collaboration

Thorsten Allers 1 collaboration

Frank Hille 1 collaboration

Anita Marchfelder 1 collaboration

Steffen Fuchs 1 collaboration

Clara Danßmann 1 collaboration

Filippos Klironomos 1 collaboration

Annika Winkler 1 collaboration

Louisa-Marie Kruetzfeldt 1 collaboration

Annabell Szymansky 1 collaboration

Julian Naderi 1 collaboration

Laura Grunewald 1 collaboration

Konstantin Helmsauer 1 collaboration

Elias Rodriguez-Fos 1 collaboration

Marieluise Kirchner 1 collaboration

Philipp Mertins 1 collaboration

Kathy Astrahantseff 1 collaboration

Christin Suenkel 1 collaboration

Joern Toedling 1 collaboration

Fabienne Meggetto 1 collaboration

Marc Remke 1 collaboration

Patrick Hundsdoerfer 1 collaboration

Hedwig E Deubzer 1 collaboration

Annette Künkele 1 collaboration

Peter Lang 1 collaboration

Jörg Fuchs 1 collaboration

Anton G Henssen 1 collaboration

Angelika Eggert 1 collaboration

Nikolaus Rajewsky 1 collaboration

Falk Hertwig 1 collaboration

Johannes H Schulte 1 collaboration

Richard A Schäfer 1 collaboration

Dominik Rabsch 1 collaboration

Guillaume E Scholz 1 collaboration

Wolfgang R Hess 1 collaboration

Björn Voß 1 collaboration

Anne Nitsche 1 collaboration

Christian Arnold 1 collaboration

Kristin Reiche 1 collaboration

Jörg Hackermüller 1 collaboration

Friedemann Horn 1 collaboration

Maria Emília M T Walter 1 collaboration

Sarah von Löhneysen 1 collaboration

Polina Drozdova 1 collaboration

Tom Hartmann 1 collaboration

Thorsten Kaiser 1 collaboration

Sarah J Berkemer 1 collaboration

Simon M Hoser 1 collaboration

Andreas Meindl 1 collaboration

Maximilian Gamper 1 collaboration

Lisa Müller 1 collaboration

Melanie Ploner 1 collaboration

Matthias Misslinger 1 collaboration

Leopold Kremser 1 collaboration

Herbert Lindner 1 collaboration

Stephan Geley 1 collaboration

Heiner Schaal 1 collaboration

Alexander Huettenhofer 1 collaboration

Iwona Nowak 1 collaboration

Elżbieta Boratyn 1 collaboration

Sebastian Student 1 collaboration

Stephan F Bernhart 1 collaboration

Małgorzata Durbas 1 collaboration

Hanna Rokita 1 collaboration

Natasha Andressa Nogueira Jorge 1 collaboration

Mara Knobloch 1 collaboration

Ernesto Parra-Rincón 1 collaboration

Adriaan Gittenberger 1 collaboration

Federico D Brown 1 collaboration

Clara I Bermúdez-Santana 1 collaboration

Christian Lorenz 1 collaboration

Philippe Wolff 1 collaboration

Antony Lechner 1 collaboration