Jonathan M Monk

Affiliations

Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.

Publications (7)

A workflow for generating multi-strain genome-scale metabolic models of prokaryotes.

Nature protocols

Avec: Charles J Norsigian , Xin Fang , Yara Seif , Jonathan M Monk , Bernhard O Palsson

Improved Dried Blood Spot-Based Metabolomics: A Targeted, Broad-Spectrum, Single-Injection Method.

Metabolites

Avec: Kefeng Li , Jane C Naviaux , Jonathan M Monk , Lin Wang , Robert K Naviaux

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

PLoS computational biology

Avec: Jean-Christophe Lachance , Colton J Lloyd , Jonathan M Monk , Laurence Yang , Anand V Sastry , Yara Seif , Bernhard O Palsson , Sébastien Rodrigue , Adam M Feist , Zachary A King , Pierre-Étienne Jacques

Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia.

PloS one

Avec: Christopher R Miller , Jonathan M Monk , Richard Szubin , Andrew D Berti

Genome-scale metabolic modeling reveals key features of a minimal gene set.

Molecular systems biology

Avec: Jean-Christophe Lachance , Dominick Matteau , Joëlle Brodeur , Colton J Lloyd , Nathan Mih , Zachary A King , Thomas F Knight , Adam M Feist , Jonathan M Monk , Bernhard O Palsson , Pierre-Étienne Jacques , Sébastien Rodrigue

Fish oil supplementation increases expression of mammary tumor apoptosis mediators and reduces inflammation in an obesity-associated HER-2 breast cancer model.

The Journal of nutritional biochemistry

Avec: Jennifer M Monk , Danyelle M Liddle , Amber L Hutchinson , Jessie L Burns , Hannah Wellings , Nadia M Cartwright , William J Muller , Krista A Power , Lindsay E Robinson , David W L Ma

Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species.

Nature communications

Avec: Jason C Hyun , Jonathan M Monk , Richard Szubin , Ying Hefner , Bernhard O Palsson

Réseau de co-auteurs

Bernhard O Palsson 4 collaborations

Yara Seif 2 collaborations

Jean-Christophe Lachance 2 collaborations

Colton J Lloyd 2 collaborations

Sébastien Rodrigue 2 collaborations

Adam M Feist 2 collaborations

Zachary A King 2 collaborations

Pierre-Étienne Jacques 2 collaborations

Richard Szubin 2 collaborations

Charles J Norsigian 1 collaboration

Xin Fang 1 collaboration

Kefeng Li 1 collaboration

Jane C Naviaux 1 collaboration

Lin Wang 1 collaboration

Robert K Naviaux 1 collaboration

Laurence Yang 1 collaboration

Anand V Sastry 1 collaboration

Christopher R Miller 1 collaboration

Andrew D Berti 1 collaboration

Dominick Matteau 1 collaboration

Joëlle Brodeur 1 collaboration

Nathan Mih 1 collaboration

Thomas F Knight 1 collaboration

Jennifer M Monk 1 collaboration

Danyelle M Liddle 1 collaboration

Amber L Hutchinson 1 collaboration

Jessie L Burns 1 collaboration

Hannah Wellings 1 collaboration

Nadia M Cartwright 1 collaboration

William J Muller 1 collaboration

Krista A Power 1 collaboration

Lindsay E Robinson 1 collaboration

David W L Ma 1 collaboration

Jason C Hyun 1 collaboration

Ying Hefner 1 collaboration