Lisa Karstens

Affiliations

Division of Bioinformatics and Computational Biomedicine; Division of Urogynecology, Oregon Health & Science University, Portland, OR.

Publications (25)

Urinary microbiome community types associated with urinary incontinence severity in women.

American journal of obstetrics and gynecology

Avec: Megan U Carnes , Nazema Y Siddiqui , Lisa Karstens , Marie G Gantz , Darrell L Dinwiddie , Vivian W Sung , Megan Bradley , Linda Brubaker , Cecile A Ferrando , Donna Mazloomdoost , Holly E Richter , Rebecca G Rogers , Ariana L Smith , Yuko M Komesu , Auteur inconnu

The Impact of Local Estrogen on the Urogenital Microbiome in Genitourinary Syndrome of Menopause: A Randomized-Controlled Trial.

Female pelvic medicine & reconstructive surgery

Avec: Jennifer Nicole Lillemon , Lisa Karstens , Rahel Nardos , Bharti Garg , Emily R Boniface , W Thomas Gregory

Network-Based Differences in the Vaginal and Bladder Microbial Communities Between Women With and Without Urgency Urinary Incontinence.

Frontiers in cellular and infection microbiology

Avec: Rahel Nardos , Eric T Leung , Erin M Dahl , Sean Davin , Mark Asquith , W Thomas Gregory , Lisa Karstens

Oral microbiome diversity: The curious case of Corynebacterium sp. isolation.

Molecular oral microbiology

Avec: Puthayalai Treerat , Brian McGuire , Elizabeth Palmer , Erin M Dahl , Lisa Karstens , Justin Merritt , Jens Kreth

Synthesis of current pediatric urinary microbiome research.

Frontiers in pediatrics

Avec: Layla M Jeries , Tatyana A Sysoeva , Lisa Karstens , Maryellen S Kelly

Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments.

mSystems

Avec: Lisa Karstens , Mark Asquith , Sean Davin , Damien Fair , W Thomas Gregory , Alan J Wolfe , Jonathan Braun , Shannon McWeeney

HLA Alleles Associated With Risk of Ankylosing Spondylitis and Rheumatoid Arthritis Influence the Gut Microbiome.

Arthritis & rheumatology (Hoboken, N.J.)

Avec: Mark Asquith , Peter R Sternes , Mary-Ellen Costello , Lisa Karstens , Sarah Diamond , Tammy M Martin , Zhixiu Li , Mhairi S Marshall , Timothy D Spector , Kim-Anh le Cao , James T Rosenbaum , Matthew A Brown

Antimetabolite Drugs Exhibit Distinctive Immunomodulatory Mechanisms and Effects on the Intestinal Microbiota in Experimental Autoimmune Uveitis.

Investigative ophthalmology & visual science

Avec: Victor Llorenç , Yukiko Nakamura , Christina Metea , Lisa Karstens , Blanca Molins , Phoebe Lin

Forming Consensus To Advance Urobiome Research.

mSystems

Avec: Linda Brubaker , Jean-Philippe F Gourdine , Nazema Y Siddiqui , Amanda Holland , Thomas Halverson , Roberto Limeria , David Pride , Lenore Ackerman , Catherine S Forster , Kristin M Jacobs , Krystal J Thomas-White , Catherine Putonti , Qunfeng Dong , Michael Weinstein , Emily S Lukacz , Lisa Karstens , Alan J Wolfe

Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation.

Frontiers in cellular and infection microbiology

Avec: Nazema Y Siddiqui , Li Ma , Linda Brubaker , Jialiang Mao , Carter Hoffman , Erin M Dahl , Zhuoqun Wang , Lisa Karstens

Characterization of pediatric urinary microbiome at species-level resolution indicates variation due to sex, age, and urologic history.

Journal of pediatric urology

Avec: Maryellen S Kelly , Erin M Dahl , Layla M Jeries , Tatyana A Sysoeva , Lisa Karstens

Disruption of Intestinal Homeostasis and Intestinal Microbiota During Experimental Autoimmune Uveitis.

Investigative ophthalmology & visual science

Avec: Cathleen Janowitz , Yukiko K Nakamura , Christina Metea , Abigail Gligor , William Yu , Lisa Karstens , James T Rosenbaum , Mark Asquith , Phoebe Lin

Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing.

mSystems

Avec: Carter Hoffman , Nazema Y Siddiqui , Ian Fields , W Thomas Gregory , Holly M Simon , Michael A Mooney , Alan J Wolfe , Lisa Karstens

Reporting guidelines for human microbiome research: the STORMS checklist.

Nature medicine

Avec: Chloe Mirzayi , Audrey Renson , Auteur inconnu , Auteur inconnu , Fatima Zohra , Shaimaa Elsafoury , Ludwig Geistlinger , Lora J Kasselman , Kelly Eckenrode , Janneke van de Wijgert , Amy Loughman , Francine Z Marques , David A MacIntyre , Manimozhiyan Arumugam , Rimsha Azhar , Francesco Beghini , Kirk Bergstrom , Ami Bhatt , Jordan E Bisanz , Jonathan Braun , Hector Corrada Bravo , Gregory A Buck , Frederic Bushman , David Casero , Gerard Clarke , Maria Carmen Collado , Paul D Cotter , John F Cryan , Ryan T Demmer , Suzanne Devkota , Eran Elinav , Juan S Escobar , Jennifer Fettweis , Robert D Finn , Anthony A Fodor , Sofia Forslund , Andre Franke , Cesare Furlanello , Jack Gilbert , Elizabeth Grice , Benjamin Haibe-Kains , Scott Handley , Pamela Herd , Susan Holmes , Jonathan P Jacobs , Lisa Karstens , Rob Knight , Dan Knights , Omry Koren , Douglas S Kwon , Morgan Langille , Brianna Lindsay , Dermot McGovern , Alice C McHardy , Shannon McWeeney , Noel T Mueller , Luigi Nezi , Matthew Olm , Noah Palm , Edoardo Pasolli , Jeroen Raes , Matthew R Redinbo , Malte Rühlemann , R Balfour Sartor , Patrick D Schloss , Lynn Schriml , Eran Segal , Michelle Shardell , Thomas Sharpton , Ekaterina Smirnova , Harry Sokol , Justin L Sonnenburg , Sujatha Srinivasan , Louise B Thingholm , Peter J Turnbaugh , Vaibhav Upadhyay , Ramona L Walls , Paul Wilmes , Takuji Yamada , Georg Zeller , Mingyu Zhang , Ni Zhao , Liping Zhao , Wenjun Bao , Aedin Culhane , Viswanath Devanarayan , Joaquin Dopazo , Xiaohui Fan , Matthias Fischer , Wendell Jones , Rebecca Kusko , Christopher E Mason , Tim R Mercer , Susanna-Assunta Sansone , Andreas Scherer , Leming Shi , Shraddha Thakkar , Weida Tong , Russ Wolfinger , Christopher Hunter , Nicola Segata , Curtis Huttenhower , Jennifer B Dowd , Heidi E Jones , Levi Waldron

BMI and BPH correlate with urinary microbiome diversity and lower urinary tract symptoms in men.

bioRxiv : the preprint server for biology

Avec: Kate R Bowie , Mark Garzotto , Eric Orwoll , Lisa Karstens

Association between Gut Microbiota and Breast Cancer: Diet as a Potential Modulating Factor.

Nutrients

Avec: Duygu Altinok Dindar , Brie Chun , Amy Palma , John Cheney , Madeline Krieger , Kristin Kasschau , Keaton Stagaman , Zahi I Mitri , Shaun M Goodyear , Jackilen Shannon , Lisa Karstens , Thomas Sharpton , Zhenzhen Zhang

Emerging Priorities for Microbiome Research.

Frontiers in microbiology

Avec: Chad M Cullen , Kawalpreet K Aneja , Sinem Beyhan , Clara E Cho , Stephen Woloszynek , Matteo Convertino , Sophie J McCoy , Yanyan Zhang , Matthew Z Anderson , David Alvarez-Ponce , Ekaterina Smirnova , Lisa Karstens , Pieter C Dorrestein , Hongzhe Li , Ananya Sen Gupta , Kevin Cheung , Jennifer Gloeckner Powers , Zhengqiao Zhao , Gail L Rosen

Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass.

mSystems

Avec: Vincent Caruso , Xubo Song , Mark Asquith , Lisa Karstens

Alpha-Glucosidase Inhibitors Alter Gut Microbiota and Ameliorate Collagen-Induced Arthritis.

Frontiers in pharmacology

Avec: Lingshu Zhang , Pingfang Song , Xiaowei Zhang , Christina Metea , Matthew Schleisman , Lisa Karstens , Eric Leung , Jun Zhang , Qiang Xu , Yi Liu , Mark Asquith , Cong-Qiu Chu

Benchmarking DNA isolation kits used in analyses of the urinary microbiome.

Scientific reports

Avec: Lisa Karstens , Nazema Y Siddiqui , Tamara Zaza , Alecsander Barstad , Cindy L Amundsen , Tatyana A Sysoeva

Microbiology resource announcements

Avec: Erin M Dahl , Emory Neer , Kate R Bowie , Eric T Leung , Lisa Karstens

Axial spondyloarthritis patients have altered mucosal IgA response to oral and fecal microbiota.

Frontiers in immunology

Avec: Tejpal Gill , Patrick Stauffer , Mark Asquith , Ted Laderas , Tammy M Martin , Sean Davin , Matthew Schleisman , Claire Ramirez , Kimberly Ogle , Ingrid Lindquist , Justine Nguyen , Stephen R Planck , Carley Shaut , Sarah Diamond , James T Rosenbaum , Lisa Karstens

Sybil: A Validated Deep Learning Model to Predict Future Lung Cancer Risk From a Single Low-Dose Chest Computed Tomography.

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

Avec: Peter G Mikhael , Jeremy Wohlwend , Adam Yala , Ludvig Karstens , Justin Xiang , Angelo K Takigami , Patrick P Bourgouin , PuiYee Chan , Sofiane Mrah , Wael Amayri , Yu-Hsiang Juan , Cheng-Ta Yang , Yung-Liang Wan , Gigin Lin , Lecia V Sequist , Florian J Fintelmann , Regina Barzilay

A diet rich in fermentable fiber promotes robust changes in the intestinal microbiota, mitigates intestinal permeability, and attenuates autoimmune uveitis.

Scientific reports

Avec: Yukiko K Nakamura , Christina Metea , Victor Llorenç , Lisa Karstens , Ariel Balter , Phoebe Lin

Characterization of pediatric urinary microbiome at species-level resolution indicates variation due to sex, age, and urologic history.

medRxiv : the preprint server for health sciences

Avec: Maryellen S Kelly , Erin M Dahl , Layla Jeries , Tatyana A Sysoeva , Lisa Karstens

Réseau de co-auteurs

Mark Asquith 7 collaborations

Erin M Dahl 6 collaborations

Nazema Y Siddiqui 5 collaborations

W Thomas Gregory 4 collaborations

Tatyana A Sysoeva 4 collaborations

Christina Metea 4 collaborations

Linda Brubaker 3 collaborations

None None 3 collaborations

Sean Davin 3 collaborations

Maryellen S Kelly 3 collaborations

Alan J Wolfe 3 collaborations

James T Rosenbaum 3 collaborations

Phoebe Lin 3 collaborations

Rahel Nardos 2 collaborations

Eric T Leung 2 collaborations

Layla M Jeries 2 collaborations

Jonathan Braun 2 collaborations

Shannon McWeeney 2 collaborations

Sarah Diamond 2 collaborations

Tammy M Martin 2 collaborations

Victor Llorenç 2 collaborations

Carter Hoffman 2 collaborations

Yukiko K Nakamura 2 collaborations

Thomas Sharpton 2 collaborations

Ekaterina Smirnova 2 collaborations

Kate R Bowie 2 collaborations

Matthew Schleisman 2 collaborations

Megan U Carnes 1 collaboration

Marie G Gantz 1 collaboration

Darrell L Dinwiddie 1 collaboration

Vivian W Sung 1 collaboration

Megan Bradley 1 collaboration

Cecile A Ferrando 1 collaboration

Donna Mazloomdoost 1 collaboration

Holly E Richter 1 collaboration

Rebecca G Rogers 1 collaboration

Ariana L Smith 1 collaboration

Yuko M Komesu 1 collaboration

Jennifer Nicole Lillemon 1 collaboration

Bharti Garg 1 collaboration

Emily R Boniface 1 collaboration

Puthayalai Treerat 1 collaboration

Brian McGuire 1 collaboration

Elizabeth Palmer 1 collaboration

Justin Merritt 1 collaboration

Jens Kreth 1 collaboration

Damien Fair 1 collaboration

Peter R Sternes 1 collaboration

Mary-Ellen Costello 1 collaboration

Zhixiu Li 1 collaboration

Mhairi S Marshall 1 collaboration

Timothy D Spector 1 collaboration

Kim-Anh le Cao 1 collaboration

Matthew A Brown 1 collaboration

Yukiko Nakamura 1 collaboration

Blanca Molins 1 collaboration

Jean-Philippe F Gourdine 1 collaboration

Amanda Holland 1 collaboration

Thomas Halverson 1 collaboration

Roberto Limeria 1 collaboration

David Pride 1 collaboration

Lenore Ackerman 1 collaboration

Catherine S Forster 1 collaboration

Kristin M Jacobs 1 collaboration

Krystal J Thomas-White 1 collaboration

Catherine Putonti 1 collaboration

Qunfeng Dong 1 collaboration

Michael Weinstein 1 collaboration

Emily S Lukacz 1 collaboration

Li Ma 1 collaboration

Jialiang Mao 1 collaboration

Zhuoqun Wang 1 collaboration

Cathleen Janowitz 1 collaboration

Abigail Gligor 1 collaboration

William Yu 1 collaboration

Ian Fields 1 collaboration

Holly M Simon 1 collaboration

Michael A Mooney 1 collaboration

Chloe Mirzayi 1 collaboration

Audrey Renson 1 collaboration

Fatima Zohra 1 collaboration

Shaimaa Elsafoury 1 collaboration

Ludwig Geistlinger 1 collaboration

Lora J Kasselman 1 collaboration

Kelly Eckenrode 1 collaboration

Janneke van de Wijgert 1 collaboration

Amy Loughman 1 collaboration

Francine Z Marques 1 collaboration

David A MacIntyre 1 collaboration

Manimozhiyan Arumugam 1 collaboration

Rimsha Azhar 1 collaboration

Francesco Beghini 1 collaboration

Kirk Bergstrom 1 collaboration

Ami Bhatt 1 collaboration

Jordan E Bisanz 1 collaboration

Hector Corrada Bravo 1 collaboration

Gregory A Buck 1 collaboration

Frederic Bushman 1 collaboration

David Casero 1 collaboration

Gerard Clarke 1 collaboration

Maria Carmen Collado 1 collaboration

Paul D Cotter 1 collaboration

John F Cryan 1 collaboration

Ryan T Demmer 1 collaboration

Suzanne Devkota 1 collaboration

Eran Elinav 1 collaboration

Juan S Escobar 1 collaboration

Jennifer Fettweis 1 collaboration

Robert D Finn 1 collaboration

Anthony A Fodor 1 collaboration

Sofia Forslund 1 collaboration

Andre Franke 1 collaboration

Cesare Furlanello 1 collaboration

Jack Gilbert 1 collaboration

Elizabeth Grice 1 collaboration

Benjamin Haibe-Kains 1 collaboration

Scott Handley 1 collaboration

Pamela Herd 1 collaboration

Susan Holmes 1 collaboration

Jonathan P Jacobs 1 collaboration

Rob Knight 1 collaboration

Dan Knights 1 collaboration

Omry Koren 1 collaboration

Douglas S Kwon 1 collaboration

Morgan Langille 1 collaboration

Brianna Lindsay 1 collaboration

Dermot McGovern 1 collaboration

Alice C McHardy 1 collaboration

Noel T Mueller 1 collaboration

Luigi Nezi 1 collaboration

Matthew Olm 1 collaboration

Noah Palm 1 collaboration

Edoardo Pasolli 1 collaboration

Jeroen Raes 1 collaboration

Matthew R Redinbo 1 collaboration

Malte Rühlemann 1 collaboration

R Balfour Sartor 1 collaboration

Patrick D Schloss 1 collaboration

Lynn Schriml 1 collaboration

Eran Segal 1 collaboration

Michelle Shardell 1 collaboration

Harry Sokol 1 collaboration

Justin L Sonnenburg 1 collaboration

Sujatha Srinivasan 1 collaboration

Louise B Thingholm 1 collaboration

Peter J Turnbaugh 1 collaboration

Vaibhav Upadhyay 1 collaboration

Ramona L Walls 1 collaboration

Paul Wilmes 1 collaboration

Takuji Yamada 1 collaboration

Georg Zeller 1 collaboration

Mingyu Zhang 1 collaboration

Ni Zhao 1 collaboration

Liping Zhao 1 collaboration

Wenjun Bao 1 collaboration

Aedin Culhane 1 collaboration

Viswanath Devanarayan 1 collaboration

Joaquin Dopazo 1 collaboration

Xiaohui Fan 1 collaboration

Matthias Fischer 1 collaboration

Wendell Jones 1 collaboration

Rebecca Kusko 1 collaboration

Christopher E Mason 1 collaboration

Tim R Mercer 1 collaboration

Susanna-Assunta Sansone 1 collaboration

Andreas Scherer 1 collaboration

Leming Shi 1 collaboration

Shraddha Thakkar 1 collaboration

Weida Tong 1 collaboration

Russ Wolfinger 1 collaboration

Christopher Hunter 1 collaboration

Nicola Segata 1 collaboration

Curtis Huttenhower 1 collaboration

Jennifer B Dowd 1 collaboration

Heidi E Jones 1 collaboration

Levi Waldron 1 collaboration

Mark Garzotto 1 collaboration

Eric Orwoll 1 collaboration

Duygu Altinok Dindar 1 collaboration

Brie Chun 1 collaboration

Amy Palma 1 collaboration

John Cheney 1 collaboration

Madeline Krieger 1 collaboration

Kristin Kasschau 1 collaboration

Keaton Stagaman 1 collaboration

Zahi I Mitri 1 collaboration

Shaun M Goodyear 1 collaboration

Jackilen Shannon 1 collaboration

Zhenzhen Zhang 1 collaboration

Chad M Cullen 1 collaboration

Kawalpreet K Aneja 1 collaboration

Sinem Beyhan 1 collaboration

Clara E Cho 1 collaboration

Stephen Woloszynek 1 collaboration

Matteo Convertino 1 collaboration

Sophie J McCoy 1 collaboration

Yanyan Zhang 1 collaboration

Matthew Z Anderson 1 collaboration

David Alvarez-Ponce 1 collaboration

Pieter C Dorrestein 1 collaboration

Hongzhe Li 1 collaboration

Ananya Sen Gupta 1 collaboration

Kevin Cheung 1 collaboration

Jennifer Gloeckner Powers 1 collaboration

Zhengqiao Zhao 1 collaboration

Gail L Rosen 1 collaboration

Vincent Caruso 1 collaboration

Xubo Song 1 collaboration

Lingshu Zhang 1 collaboration

Pingfang Song 1 collaboration

Xiaowei Zhang 1 collaboration

Eric Leung 1 collaboration

Jun Zhang 1 collaboration

Qiang Xu 1 collaboration

Yi Liu 1 collaboration

Cong-Qiu Chu 1 collaboration

Tamara Zaza 1 collaboration

Alecsander Barstad 1 collaboration

Cindy L Amundsen 1 collaboration

Emory Neer 1 collaboration

Tejpal Gill 1 collaboration

Patrick Stauffer 1 collaboration

Ted Laderas 1 collaboration

Claire Ramirez 1 collaboration

Kimberly Ogle 1 collaboration

Ingrid Lindquist 1 collaboration

Justine Nguyen 1 collaboration

Stephen R Planck 1 collaboration

Carley Shaut 1 collaboration

Peter G Mikhael 1 collaboration

Jeremy Wohlwend 1 collaboration

Adam Yala 1 collaboration

Ludvig Karstens 1 collaboration

Justin Xiang 1 collaboration

Angelo K Takigami 1 collaboration

Patrick P Bourgouin 1 collaboration

PuiYee Chan 1 collaboration

Sofiane Mrah 1 collaboration

Wael Amayri 1 collaboration

Yu-Hsiang Juan 1 collaboration

Cheng-Ta Yang 1 collaboration

Yung-Liang Wan 1 collaboration

Gigin Lin 1 collaboration

Lecia V Sequist 1 collaboration

Florian J Fintelmann 1 collaboration

Regina Barzilay 1 collaboration

Ariel Balter 1 collaboration

Layla Jeries 1 collaboration