Patrick D Schloss

Affiliations

Department of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA pschloss@umich.edu.

ORCID: 0000-0002-6935-4275

Publications (18)

The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data.

mSphere

Avec: Marc A Sze , Patrick D Schloss

Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure.

mBio

Avec: Marc A Sze , Begüm D Topçuoğlu , Nicholas A Lesniak , Mack T Ruffin , Patrick D Schloss

OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs.

mSphere

Avec: Kelly L Sovacool , Sarah L Westcott , M Brodie Mumphrey , Gabrielle A Dotson , Patrick D Schloss

Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research.

The Journal of open source education

Avec: Zena Lapp , Kelly L Sovacool , Nick Lesniak , Dana King , Catherine Barnier , Matthew Flickinger , Jule Krüger , Courtney R Armour , Maya M Lapp , Jason Tallant , Rucheng Diao , Morgan Oneka , Sarah Tomkovich , Jacqueline Moltzau Anderson , Sarah K Lucas , Patrick D Schloss

Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.

mSphere

Avec: Patrick D Schloss

Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis.

mBio

Avec: Madeline R Barron , Kelly L Sovacool , Lisa Abernathy-Close , Kimberly C Vendrov , Alexandra K Standke , Ingrid L Bergin , Patrick D Schloss , Vincent B Young

Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities.

mBio

Avec: Nicholas A Lesniak , Sarah Tomkovich , Andrew Henry , Ana Taylor , Joanna Colovas , Lucas Bishop , Kathryn McBride , Patrick D Schloss

A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems.

mBio

Avec: Begüm D Topçuoğlu , Nicholas A Lesniak , Mack T Ruffin , Jenna Wiens , Patrick D Schloss

An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance.

mSphere

Avec: Sarah Tomkovich , Ana Taylor , Jacob King , Joanna Colovas , Lucas Bishop , Kathryn McBride , Sonya Royzenblat , Nicholas A Lesniak , Ingrid L Bergin , Patrick D Schloss

The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice.

mSphere

Avec: Sarah Tomkovich , Joshua M A Stough , Lucas Bishop , Patrick D Schloss

Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis.

mBio

Avec: Ada K Hagan , Begüm D Topçuoğlu , Mia E Gregory , Hazel A Barton , Patrick D Schloss

The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices.

Microbiology resource announcements

Avec: Patrick D Schloss

Gut Microbiome Composition in Lynch Syndrome With and Without History of Colorectal Neoplasia and Non-Lynch Controls.

Journal of gastrointestinal cancer

Avec: S B Rifkin , M A Sze , K Tuck , E Koeppe , E M Stoffel , P D Schloss

Waste not, want not: revisiting the analysis that called into question the practice of rarefaction.

mSphere

Avec: Patrick D Schloss

Reintroducing mothur: 10 Years Later.

Applied and environmental microbiology

Avec: Patrick D Schloss

Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses.

mSphere

Avec: Patrick D Schloss

The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity.

mBio

Avec: Nicholas A Lesniak , Alyxandria M Schubert , Kaitlin J Flynn , Jhansi L Leslie , Hamide Sinani , Ingrid L Bergin , Vincent B Young , Patrick D Schloss

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

ArXiv

Avec: Awan Afiaz , Andrey A Ivanov , John Chamberlin , David Hanauer , Candace L Savonen , Mary J Goldman , Martin Morgan , Michael Reich , Alexander Getka , Aaron Holmes , Sarthak Pati , Dan Knight , Paul C Boutros , Spyridon Bakas , J Gregory Caporaso , Guilherme Del Fiol , Harry Hochheiser , Brian Haas , Patrick D Schloss , James A Eddy , Jake Albrecht , Andrey Fedorov , Levi Waldron , Ava M Hoffman , Richard L Bradshaw , Jeffrey T Leek , Carrie Wright

Réseau de co-auteurs

Nicholas A Lesniak 5 collaborations

Sarah Tomkovich 4 collaborations

Begüm D Topçuoğlu 3 collaborations

Kelly L Sovacool 3 collaborations

Ingrid L Bergin 3 collaborations

Lucas Bishop 3 collaborations

Marc A Sze 2 collaborations

Mack T Ruffin 2 collaborations

Vincent B Young 2 collaborations

Ana Taylor 2 collaborations

Joanna Colovas 2 collaborations

Kathryn McBride 2 collaborations

Sarah L Westcott 1 collaboration

M Brodie Mumphrey 1 collaboration

Gabrielle A Dotson 1 collaboration

Zena Lapp 1 collaboration

Nick Lesniak 1 collaboration

Dana King 1 collaboration

Catherine Barnier 1 collaboration

Matthew Flickinger 1 collaboration

Jule Krüger 1 collaboration

Courtney R Armour 1 collaboration

Maya M Lapp 1 collaboration

Jason Tallant 1 collaboration

Rucheng Diao 1 collaboration

Morgan Oneka 1 collaboration

Jacqueline Moltzau Anderson 1 collaboration

Sarah K Lucas 1 collaboration

Madeline R Barron 1 collaboration

Lisa Abernathy-Close 1 collaboration

Kimberly C Vendrov 1 collaboration

Alexandra K Standke 1 collaboration

Andrew Henry 1 collaboration

Jenna Wiens 1 collaboration

Jacob King 1 collaboration

Sonya Royzenblat 1 collaboration

Joshua M A Stough 1 collaboration

Ada K Hagan 1 collaboration

Mia E Gregory 1 collaboration

Hazel A Barton 1 collaboration

S B Rifkin 1 collaboration

M A Sze 1 collaboration

K Tuck 1 collaboration

E Koeppe 1 collaboration

E M Stoffel 1 collaboration

P D Schloss 1 collaboration

Alyxandria M Schubert 1 collaboration

Kaitlin J Flynn 1 collaboration

Jhansi L Leslie 1 collaboration

Hamide Sinani 1 collaboration

Awan Afiaz 1 collaboration

Andrey A Ivanov 1 collaboration

John Chamberlin 1 collaboration

David Hanauer 1 collaboration

Candace L Savonen 1 collaboration

Mary J Goldman 1 collaboration

Martin Morgan 1 collaboration

Michael Reich 1 collaboration

Alexander Getka 1 collaboration

Aaron Holmes 1 collaboration

Sarthak Pati 1 collaboration

Dan Knight 1 collaboration

Paul C Boutros 1 collaboration

Spyridon Bakas 1 collaboration

J Gregory Caporaso 1 collaboration

Guilherme Del Fiol 1 collaboration

Harry Hochheiser 1 collaboration

Brian Haas 1 collaboration

James A Eddy 1 collaboration

Jake Albrecht 1 collaboration

Andrey Fedorov 1 collaboration

Levi Waldron 1 collaboration

Ava M Hoffman 1 collaboration

Richard L Bradshaw 1 collaboration

Jeffrey T Leek 1 collaboration

Carrie Wright 1 collaboration