Accueil
Patrick D Schloss
Patrick D Schloss
Affiliations
Department of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA pschloss@umich.edu.
ORCID: 0000-0002-6935-4275
Publications (18)
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data.
mSphere
Avec:
Marc A Sze
,
Patrick D Schloss
Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure.
mBio
Avec:
Marc A Sze
,
Begüm D Topçuoğlu
,
Nicholas A Lesniak
,
Mack T Ruffin
,
Patrick D Schloss
OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs.
mSphere
Avec:
Kelly L Sovacool
,
Sarah L Westcott
,
M Brodie Mumphrey
,
Gabrielle A Dotson
,
Patrick D Schloss
Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research.
The Journal of open source education
Avec:
Zena Lapp
,
Kelly L Sovacool
,
Nick Lesniak
,
Dana King
,
Catherine Barnier
,
Matthew Flickinger
,
Jule Krüger
,
Courtney R Armour
,
Maya M Lapp
,
Jason Tallant
,
Rucheng Diao
,
Morgan Oneka
,
Sarah Tomkovich
,
Jacqueline Moltzau Anderson
,
Sarah K Lucas
,
Patrick D Schloss
Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
mSphere
Avec:
Patrick D Schloss
Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis.
mBio
Avec:
Madeline R Barron
,
Kelly L Sovacool
,
Lisa Abernathy-Close
,
Kimberly C Vendrov
,
Alexandra K Standke
,
Ingrid L Bergin
,
Patrick D Schloss
,
Vincent B Young
Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities.
mBio
Avec:
Nicholas A Lesniak
,
Sarah Tomkovich
,
Andrew Henry
,
Ana Taylor
,
Joanna Colovas
,
Lucas Bishop
,
Kathryn McBride
,
Patrick D Schloss
A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems.
mBio
Avec:
Begüm D Topçuoğlu
,
Nicholas A Lesniak
,
Mack T Ruffin
,
Jenna Wiens
,
Patrick D Schloss
An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance.
mSphere
Avec:
Sarah Tomkovich
,
Ana Taylor
,
Jacob King
,
Joanna Colovas
,
Lucas Bishop
,
Kathryn McBride
,
Sonya Royzenblat
,
Nicholas A Lesniak
,
Ingrid L Bergin
,
Patrick D Schloss
The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice.
mSphere
Avec:
Sarah Tomkovich
,
Joshua M A Stough
,
Lucas Bishop
,
Patrick D Schloss
Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis.
mBio
Avec:
Ada K Hagan
,
Begüm D Topçuoğlu
,
Mia E Gregory
,
Hazel A Barton
,
Patrick D Schloss
The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices.
Microbiology resource announcements
Avec:
Patrick D Schloss
Gut Microbiome Composition in Lynch Syndrome With and Without History of Colorectal Neoplasia and Non-Lynch Controls.
Journal of gastrointestinal cancer
Avec:
S B Rifkin
,
M A Sze
,
K Tuck
,
E Koeppe
,
E M Stoffel
,
P D Schloss
Waste not, want not: revisiting the analysis that called into question the practice of rarefaction.
mSphere
Avec:
Patrick D Schloss
Reintroducing mothur: 10 Years Later.
Applied and environmental microbiology
Avec:
Patrick D Schloss
Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses.
mSphere
Avec:
Patrick D Schloss
The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity.
mBio
Avec:
Nicholas A Lesniak
,
Alyxandria M Schubert
,
Kaitlin J Flynn
,
Jhansi L Leslie
,
Hamide Sinani
,
Ingrid L Bergin
,
Vincent B Young
,
Patrick D Schloss
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?
ArXiv
Avec:
Awan Afiaz
,
Andrey A Ivanov
,
John Chamberlin
,
David Hanauer
,
Candace L Savonen
,
Mary J Goldman
,
Martin Morgan
,
Michael Reich
,
Alexander Getka
,
Aaron Holmes
,
Sarthak Pati
,
Dan Knight
,
Paul C Boutros
,
Spyridon Bakas
,
J Gregory Caporaso
,
Guilherme Del Fiol
,
Harry Hochheiser
,
Brian Haas
,
Patrick D Schloss
,
James A Eddy
,
Jake Albrecht
,
Andrey Fedorov
,
Levi Waldron
,
Ava M Hoffman
,
Richard L Bradshaw
,
Jeffrey T Leek
,
Carrie Wright
Réseau de co-auteurs
Nicholas A Lesniak
5 collaborations
Sarah Tomkovich
4 collaborations
Begüm D Topçuoğlu
3 collaborations
Kelly L Sovacool
3 collaborations
Ingrid L Bergin
3 collaborations
Lucas Bishop
3 collaborations
Marc A Sze
2 collaborations
Mack T Ruffin
2 collaborations
Vincent B Young
2 collaborations
Ana Taylor
2 collaborations
Joanna Colovas
2 collaborations
Kathryn McBride
2 collaborations
Sarah L Westcott
1 collaboration
M Brodie Mumphrey
1 collaboration
Gabrielle A Dotson
1 collaboration
Zena Lapp
1 collaboration
Nick Lesniak
1 collaboration
Dana King
1 collaboration
Catherine Barnier
1 collaboration
Matthew Flickinger
1 collaboration
Jule Krüger
1 collaboration
Courtney R Armour
1 collaboration
Maya M Lapp
1 collaboration
Jason Tallant
1 collaboration
Rucheng Diao
1 collaboration
Morgan Oneka
1 collaboration
Jacqueline Moltzau Anderson
1 collaboration
Sarah K Lucas
1 collaboration
Madeline R Barron
1 collaboration
Lisa Abernathy-Close
1 collaboration
Kimberly C Vendrov
1 collaboration
Alexandra K Standke
1 collaboration
Andrew Henry
1 collaboration
Jenna Wiens
1 collaboration
Jacob King
1 collaboration
Sonya Royzenblat
1 collaboration
Joshua M A Stough
1 collaboration
Ada K Hagan
1 collaboration
Mia E Gregory
1 collaboration
Hazel A Barton
1 collaboration
S B Rifkin
1 collaboration
M A Sze
1 collaboration
K Tuck
1 collaboration
E Koeppe
1 collaboration
E M Stoffel
1 collaboration
P D Schloss
1 collaboration
Alyxandria M Schubert
1 collaboration
Kaitlin J Flynn
1 collaboration
Jhansi L Leslie
1 collaboration
Hamide Sinani
1 collaboration
Awan Afiaz
1 collaboration
Andrey A Ivanov
1 collaboration
John Chamberlin
1 collaboration
David Hanauer
1 collaboration
Candace L Savonen
1 collaboration
Mary J Goldman
1 collaboration
Martin Morgan
1 collaboration
Michael Reich
1 collaboration
Alexander Getka
1 collaboration
Aaron Holmes
1 collaboration
Sarthak Pati
1 collaboration
Dan Knight
1 collaboration
Paul C Boutros
1 collaboration
Spyridon Bakas
1 collaboration
J Gregory Caporaso
1 collaboration
Guilherme Del Fiol
1 collaboration
Harry Hochheiser
1 collaboration
Brian Haas
1 collaboration
James A Eddy
1 collaboration
Jake Albrecht
1 collaboration
Andrey Fedorov
1 collaboration
Levi Waldron
1 collaboration
Ava M Hoffman
1 collaboration
Richard L Bradshaw
1 collaboration
Jeffrey T Leek
1 collaboration
Carrie Wright
1 collaboration