Lucas Lochovsky

Affiliations

Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT, 06520, USA.
Department of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT, 06520, USA.

Publications (5)

An integrative ENCODE resource for cancer genomics.

Nature communications

Avec: Jing Zhang , Donghoon Lee , Vineet Dhiman , Peng Jiang , Jie Xu , Patrick McGillivray , Hongbo Yang , Jason Liu , William Meyerson , Declan Clarke , Mengting Gu , Shantao Li , Shaoke Lou , Jinrui Xu , Lucas Lochovsky , Matthew Ung , Lijia Ma , Shan Yu , Qin Cao , Arif Harmanci , Koon-Kiu Yan , Anurag Sethi , Gamze Gürsoy , Michael Rutenberg Schoenberg , Joel Rozowsky , Jonathan Warrell , Prashant Emani , Yucheng T Yang , Timur Galeev , Xiangmeng Kong , Shuang Liu , Xiaotong Li , Jayanth Krishnan , Yanlin Feng , Juan Carlos Rivera-Mulia , Jessica Adrian , James R Broach , Michael Bolt , Jennifer Moran , Dominic Fitzgerald , Vishnu Dileep , Tingting Liu , Shenglin Mei , Takayo Sasaki , Claudia Trevilla-Garcia , Su Wang , Yanli Wang , Chongzhi Zang , Daifeng Wang , Robert J Klein , Michael Snyder , David M Gilbert , Kevin Yip , Chao Cheng , Feng Yue , X Shirley Liu , Kevin P White , Mark Gerstein

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Nature

Avec: Esther Rheinbay , Morten Muhlig Nielsen , Federico Abascal , Jeremiah A Wala , Ofer Shapira , Grace Tiao , Henrik Hornshøj , Julian M Hess , Randi Istrup Juul , Ziao Lin , Lars Feuerbach , Radhakrishnan Sabarinathan , Tobias Madsen , Jaegil Kim , Loris Mularoni , Shimin Shuai , Andrés Lanzós , Carl Herrmann , Yosef E Maruvka , Ciyue Shen , Samirkumar B Amin , Pratiti Bandopadhayay , Johanna Bertl , Keith A Boroevich , John Busanovich , Joana Carlevaro-Fita , Dimple Chakravarty , Calvin Wing Yiu Chan , David Craft , Priyanka Dhingra , Klev Diamanti , Nuno A Fonseca , Abel Gonzalez-Perez , Qianyun Guo , Mark P Hamilton , Nicholas J Haradhvala , Chen Hong , Keren Isaev , Todd A Johnson , Malene Juul , Andre Kahles , Abdullah Kahraman , Youngwook Kim , Jan Komorowski , Kiran Kumar , Sushant Kumar , Donghoon Lee , Kjong-Van Lehmann , Yilong Li , Eric Minwei Liu , Lucas Lochovsky , Keunchil Park , Oriol Pich , Nicola D Roberts , Gordon Saksena , Steven E Schumacher , Nikos Sidiropoulos , Lina Sieverling , Nasa Sinnott-Armstrong , Chip Stewart , David Tamborero , Jose M C Tubio , Husen M Umer , Liis Uusküla-Reimand , Claes Wadelius , Lina Wadi , Xiaotong Yao , Cheng-Zhong Zhang , Jing Zhang , James E Haber , Asger Hobolth , Marcin Imielinski , Manolis Kellis , Michael S Lawrence , Christian von Mering , Hidewaki Nakagawa , Benjamin J Raphael , Mark A Rubin , Chris Sander , Lincoln D Stein , Joshua M Stuart , Tatsuhiko Tsunoda , David A Wheeler , Rory Johnson , Jüri Reimand , Mark Gerstein , Ekta Khurana , Peter J Campbell , Núria López-Bigas , Auteur inconnu , Auteur inconnu , Joachim Weischenfeldt , Rameen Beroukhim , Iñigo Martincorena , Jakob Skou Pedersen , Gad Getz , Auteur inconnu

RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins.

Genome biology

Avec: Jing Zhang , Jason Liu , Donghoon Lee , Jo-Jo Feng , Lucas Lochovsky , Shaoke Lou , Michael Rutenberg-Schoenberg , Mark Gerstein

NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis.

BMC bioinformatics

Avec: Jing Zhang , Jason Liu , Patrick McGillivray , Caroline Yi , Lucas Lochovsky , Donghoon Lee , Mark Gerstein

Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.

Cell

Avec: Sushant Kumar , Jonathan Warrell , Shantao Li , Patrick D McGillivray , William Meyerson , Leonidas Salichos , Arif Harmanci , Alexander Martinez-Fundichely , Calvin W Y Chan , Morten Muhlig Nielsen , Lucas Lochovsky , Yan Zhang , Xiaotong Li , Shaoke Lou , Jakob Skou Pedersen , Carl Herrmann , Gad Getz , Ekta Khurana , Mark B Gerstein

Réseau de co-auteurs

Jing Zhang 4 collaborations

Donghoon Lee 4 collaborations

Mark Gerstein 4 collaborations

Jason Liu 3 collaborations

Shaoke Lou 3 collaborations

None None 3 collaborations

Patrick McGillivray 2 collaborations

William Meyerson 2 collaborations

Shantao Li 2 collaborations

Arif Harmanci 2 collaborations

Jonathan Warrell 2 collaborations

Xiaotong Li 2 collaborations

Morten Muhlig Nielsen 2 collaborations

Carl Herrmann 2 collaborations

Sushant Kumar 2 collaborations

Ekta Khurana 2 collaborations

Jakob Skou Pedersen 2 collaborations

Gad Getz 2 collaborations

Vineet Dhiman 1 collaboration

Peng Jiang 1 collaboration

Jie Xu 1 collaboration

Hongbo Yang 1 collaboration

Declan Clarke 1 collaboration

Mengting Gu 1 collaboration

Jinrui Xu 1 collaboration

Matthew Ung 1 collaboration

Lijia Ma 1 collaboration

Shan Yu 1 collaboration

Qin Cao 1 collaboration

Koon-Kiu Yan 1 collaboration

Anurag Sethi 1 collaboration

Gamze Gürsoy 1 collaboration

Michael Rutenberg Schoenberg 1 collaboration

Joel Rozowsky 1 collaboration

Prashant Emani 1 collaboration

Yucheng T Yang 1 collaboration

Timur Galeev 1 collaboration

Xiangmeng Kong 1 collaboration

Shuang Liu 1 collaboration

Jayanth Krishnan 1 collaboration

Yanlin Feng 1 collaboration

Juan Carlos Rivera-Mulia 1 collaboration

Jessica Adrian 1 collaboration

James R Broach 1 collaboration

Michael Bolt 1 collaboration

Jennifer Moran 1 collaboration

Dominic Fitzgerald 1 collaboration

Vishnu Dileep 1 collaboration

Tingting Liu 1 collaboration

Shenglin Mei 1 collaboration

Takayo Sasaki 1 collaboration

Claudia Trevilla-Garcia 1 collaboration

Su Wang 1 collaboration

Yanli Wang 1 collaboration

Chongzhi Zang 1 collaboration

Daifeng Wang 1 collaboration

Robert J Klein 1 collaboration

Michael Snyder 1 collaboration

David M Gilbert 1 collaboration

Kevin Yip 1 collaboration

Chao Cheng 1 collaboration

Feng Yue 1 collaboration

X Shirley Liu 1 collaboration

Kevin P White 1 collaboration

Esther Rheinbay 1 collaboration

Federico Abascal 1 collaboration

Jeremiah A Wala 1 collaboration

Ofer Shapira 1 collaboration

Grace Tiao 1 collaboration

Henrik Hornshøj 1 collaboration

Julian M Hess 1 collaboration

Randi Istrup Juul 1 collaboration

Ziao Lin 1 collaboration

Lars Feuerbach 1 collaboration

Radhakrishnan Sabarinathan 1 collaboration

Tobias Madsen 1 collaboration

Jaegil Kim 1 collaboration

Loris Mularoni 1 collaboration

Shimin Shuai 1 collaboration

Andrés Lanzós 1 collaboration

Yosef E Maruvka 1 collaboration

Ciyue Shen 1 collaboration

Samirkumar B Amin 1 collaboration

Pratiti Bandopadhayay 1 collaboration

Johanna Bertl 1 collaboration

Keith A Boroevich 1 collaboration

John Busanovich 1 collaboration

Joana Carlevaro-Fita 1 collaboration

Dimple Chakravarty 1 collaboration

Calvin Wing Yiu Chan 1 collaboration

David Craft 1 collaboration

Priyanka Dhingra 1 collaboration

Klev Diamanti 1 collaboration

Nuno A Fonseca 1 collaboration

Abel Gonzalez-Perez 1 collaboration

Qianyun Guo 1 collaboration

Mark P Hamilton 1 collaboration

Nicholas J Haradhvala 1 collaboration

Chen Hong 1 collaboration

Keren Isaev 1 collaboration

Todd A Johnson 1 collaboration

Malene Juul 1 collaboration

Andre Kahles 1 collaboration

Abdullah Kahraman 1 collaboration

Youngwook Kim 1 collaboration

Jan Komorowski 1 collaboration

Kiran Kumar 1 collaboration

Kjong-Van Lehmann 1 collaboration

Yilong Li 1 collaboration

Eric Minwei Liu 1 collaboration

Keunchil Park 1 collaboration

Oriol Pich 1 collaboration

Nicola D Roberts 1 collaboration

Gordon Saksena 1 collaboration

Steven E Schumacher 1 collaboration

Nikos Sidiropoulos 1 collaboration

Lina Sieverling 1 collaboration

Nasa Sinnott-Armstrong 1 collaboration

Chip Stewart 1 collaboration

David Tamborero 1 collaboration

Jose M C Tubio 1 collaboration

Husen M Umer 1 collaboration

Liis Uusküla-Reimand 1 collaboration

Claes Wadelius 1 collaboration

Lina Wadi 1 collaboration

Xiaotong Yao 1 collaboration

Cheng-Zhong Zhang 1 collaboration

James E Haber 1 collaboration

Asger Hobolth 1 collaboration

Marcin Imielinski 1 collaboration

Manolis Kellis 1 collaboration

Michael S Lawrence 1 collaboration

Christian von Mering 1 collaboration

Hidewaki Nakagawa 1 collaboration

Benjamin J Raphael 1 collaboration

Mark A Rubin 1 collaboration

Chris Sander 1 collaboration

Lincoln D Stein 1 collaboration

Joshua M Stuart 1 collaboration

Tatsuhiko Tsunoda 1 collaboration

David A Wheeler 1 collaboration

Rory Johnson 1 collaboration

Jüri Reimand 1 collaboration

Peter J Campbell 1 collaboration

Núria López-Bigas 1 collaboration

Joachim Weischenfeldt 1 collaboration

Rameen Beroukhim 1 collaboration

Iñigo Martincorena 1 collaboration

Jo-Jo Feng 1 collaboration

Michael Rutenberg-Schoenberg 1 collaboration

Caroline Yi 1 collaboration

Patrick D McGillivray 1 collaboration

Leonidas Salichos 1 collaboration

Alexander Martinez-Fundichely 1 collaboration

Calvin W Y Chan 1 collaboration

Yan Zhang 1 collaboration

Mark B Gerstein 1 collaboration