Mark Achtman

Affiliations

Warwick Medical School, University of Warwick, Coventry, UK.

ORCID: http://orcid.org/0000-0001-6815-0070

Publications (10)

Emergence of human-adapted Salmonella enterica is linked to the Neolithization process.

Nature ecology & evolution

Avec: Felix M Key , Cosimo Posth , Luis R Esquivel-Gomez , Ron Hübler , Maria A Spyrou , Gunnar U Neumann , Anja Furtwängler , Susanna Sabin , Marta Burri , Antje Wissgott , Aditya Kumar Lankapalli , Åshild J Vågene , Matthias Meyer , Sarah Nagel , Rezeda Tukhbatova , Aleksandr Khokhlov , Andrey Chizhevsky , Svend Hansen , Andrey B Belinsky , Alexey Kalmykov , Anatoly R Kantorovich , Vladimir E Maslov , Philipp W Stockhammer , Stefania Vai , Monica Zavattaro , Alessandro Riga , David Caramelli , Robin Skeates , Jessica Beckett , Maria Giuseppina Gradoli , Noah Steuri , Albert Hafner , Marianne Ramstein , Inga Siebke , Sandra Lösch , Yilmaz Selim Erdal , Nabil-Fareed Alikhan , Zhemin Zhou , Mark Achtman , Kirsten Bos , Sabine Reinhold , Wolfgang Haak , Denise Kühnert , Alexander Herbig , Johannes Krause

BlastFrost: fast querying of 100,000s of bacterial genomes in Bifrost graphs.

Genome biology

Avec: Nina Luhmann , Guillaume Holley , Mark Achtman

HierCC: a multi-level clustering scheme for population assignments based on core genome MLST.

Bioinformatics (Oxford, England)

Avec: Zhemin Zhou , Jane Charlesworth , Mark Achtman

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Avec: Mark Achtman , Zhemin Zhou , Jane Charlesworth , Laura Baxter

Proceedings of the National Academy of Sciences of the United States of America

Avec: Yoshan Moodley , Andrea Brunelli , Silvia Ghirotto , Andrey Klyubin , Ayas S Maady , William Tyne , Zilia Y Muñoz-Ramirez , Zhemin Zhou , Andrea Manica , Bodo Linz , Mark Achtman

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature.

PLoS genetics

Avec: Mark Achtman , Frederik Van den Broeck , Kerry K Cooper , Philippe Lemey , Craig T Parker , Zhemin Zhou , Auteur inconnu

The EnteroBase user's guide, with case studies on

Genome research

Avec: Zhemin Zhou , Nabil-Fareed Alikhan , Khaled Mohamed , Yulei Fan , Auteur inconnu , Mark Achtman

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Avec: Mark Achtman , Zhemin Zhou

Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica.

PLoS pathogens

Avec: Mark Achtman , John Wain , François-Xavier Weill , Satheesh Nair , Zhemin Zhou , Vartul Sangal , Mary G Krauland , James L Hale , Heather Harbottle , Alexandra Uesbeck , Gordon Dougan , Lee H Harrison , Sylvain Brisse , Auteur inconnu

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN.

Genome research

Avec: Zhemin Zhou , Jane Charlesworth , Mark Achtman

Réseau de co-auteurs

Zhemin Zhou 9 collaborations

Jane Charlesworth 3 collaborations

None None 3 collaborations

Nabil-Fareed Alikhan 2 collaborations

Felix M Key 1 collaboration

Cosimo Posth 1 collaboration

Luis R Esquivel-Gomez 1 collaboration

Ron Hübler 1 collaboration

Maria A Spyrou 1 collaboration

Gunnar U Neumann 1 collaboration

Anja Furtwängler 1 collaboration

Susanna Sabin 1 collaboration

Marta Burri 1 collaboration

Antje Wissgott 1 collaboration

Aditya Kumar Lankapalli 1 collaboration

Åshild J Vågene 1 collaboration

Matthias Meyer 1 collaboration

Sarah Nagel 1 collaboration

Rezeda Tukhbatova 1 collaboration

Aleksandr Khokhlov 1 collaboration

Andrey Chizhevsky 1 collaboration

Svend Hansen 1 collaboration

Andrey B Belinsky 1 collaboration

Alexey Kalmykov 1 collaboration

Anatoly R Kantorovich 1 collaboration

Vladimir E Maslov 1 collaboration

Philipp W Stockhammer 1 collaboration

Stefania Vai 1 collaboration

Monica Zavattaro 1 collaboration

Alessandro Riga 1 collaboration

David Caramelli 1 collaboration

Robin Skeates 1 collaboration

Jessica Beckett 1 collaboration

Maria Giuseppina Gradoli 1 collaboration

Noah Steuri 1 collaboration

Albert Hafner 1 collaboration

Marianne Ramstein 1 collaboration

Inga Siebke 1 collaboration

Sandra Lösch 1 collaboration

Yilmaz Selim Erdal 1 collaboration

Kirsten Bos 1 collaboration

Sabine Reinhold 1 collaboration

Wolfgang Haak 1 collaboration

Denise Kühnert 1 collaboration

Alexander Herbig 1 collaboration

Johannes Krause 1 collaboration

Nina Luhmann 1 collaboration

Guillaume Holley 1 collaboration

Laura Baxter 1 collaboration

Yoshan Moodley 1 collaboration

Andrea Brunelli 1 collaboration

Silvia Ghirotto 1 collaboration

Andrey Klyubin 1 collaboration

Ayas S Maady 1 collaboration

William Tyne 1 collaboration

Zilia Y Muñoz-Ramirez 1 collaboration

Andrea Manica 1 collaboration

Bodo Linz 1 collaboration

Frederik Van den Broeck 1 collaboration

Kerry K Cooper 1 collaboration

Philippe Lemey 1 collaboration

Craig T Parker 1 collaboration

Khaled Mohamed 1 collaboration

Yulei Fan 1 collaboration

John Wain 1 collaboration

François-Xavier Weill 1 collaboration

Satheesh Nair 1 collaboration

Vartul Sangal 1 collaboration

Mary G Krauland 1 collaboration

James L Hale 1 collaboration

Heather Harbottle 1 collaboration

Alexandra Uesbeck 1 collaboration

Gordon Dougan 1 collaboration

Lee H Harrison 1 collaboration

Sylvain Brisse 1 collaboration