Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on
Dental Caries
/ history
History, 15th Century
History, 16th Century
History, 17th Century
History, 18th Century
History, 19th Century
History, 20th Century
History, Ancient
History, Medieval
Humans
Metagenome
Microbiota
Mouth
/ microbiology
Phylogeny
Saliva
/ microbiology
Streptococcus mutans
/ classification
Streptococcus sobrinus
/ classification
ancient DNA
dental calculus
dental plaque
genomic reconstruction
metagenomes
saliva
Journal
Philosophical transactions of the Royal Society of London. Series B, Biological sciences
ISSN: 1471-2970
Titre abrégé: Philos Trans R Soc Lond B Biol Sci
Pays: England
ID NLM: 7503623
Informations de publication
Date de publication:
23 11 2020
23 11 2020
Historique:
entrez:
5
10
2020
pubmed:
6
10
2020
medline:
29
6
2021
Statut:
ppublish
Résumé
We have recently developed bioinformatic tools to accurately assign metagenomic sequence reads to microbial taxa: SPARSE for probabilistic, taxonomic classification of sequence reads; EToKi for assembling and polishing genomes from short-read sequences; and GrapeTree, a graphic visualizer of genetic distances between large numbers of genomes. Together, these methods support comparative analyses of genomes from ancient skeletons and modern humans. Here, we illustrate these capabilities with 784 samples from historical dental calculus, modern saliva and modern dental plaque. The analyses revealed 1591 microbial species within the oral microbiome. We anticipated that the oral complexes of Socransky
Identifiants
pubmed: 33012228
doi: 10.1098/rstb.2019.0573
pmc: PMC7702799
doi:
Banques de données
figshare
['10.6084/m9.figshare.c.5095997']
Types de publication
Historical Article
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
20190573Subventions
Organisme : Wellcome Trust
ID : 202792/Z/16/Z
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L020319/1
Pays : United Kingdom
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