Matthieu Pichaud

Affiliations

Danone Nutricia Research, Palaiseau, France.

Publications (7)

Human gut metatranscriptome changes induced by a fermented milk product are associated with improved tolerance to a flatulogenic diet.

Computational and structural biotechnology journal

Avec: Iñigo Oyarzun , Boris Le Nevé , Francisca Yañez , Zixuan Xie , Matthieu Pichaud , Gerard Serrano-Gómez , Joaquim Roca , Patrick Veiga , Fernando Azpiroz , Julien Tap , Chaysavanh Manichanh

Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors.

Nature communications

Avec: Julien Tap , Franck Lejzerowicz , Aurélie Cotillard , Matthieu Pichaud , Daniel McDonald , Se Jin Song , Rob Knight , Patrick Veiga , Muriel Derrien

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis.

Genome medicine

Avec: Damian R Plichta , Juhi Somani , Matthieu Pichaud , Zachary S Wallace , Ana D Fernandes , Cory A Perugino , Harri Lähdesmäki , John H Stone , Hera Vlamakis , Daniel C Chung , Dinesh Khanna , Shiv Pillai , Ramnik J Xavier

Gut microbiome ADP-ribosyltransferases are widespread phage-encoded fitness factors.

Cell host & microbe

Avec: Eric M Brown , Hugo Arellano-Santoyo , Emily R Temple , Zachary A Costliow , Matthieu Pichaud , A Brantley Hall , Kai Liu , Michael A Durney , Xiebin Gu , Damian R Plichta , Clary A Clish , Jeffrey A Porter , Hera Vlamakis , Ramnik J Xavier

Gut bacterial metabolites modulate endoplasmic reticulum stress.

Genome biology

Avec: Xiaobo Ke , Kwontae You , Matthieu Pichaud , Henry J Haiser , Daniel B Graham , Hera Vlamakis , Jeffrey A Porter , Ramnik J Xavier

Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn's disease.

JCI insight

Avec: Shiying Zhang , Xochitl Morgan , Belgin Dogan , Francois-Pierre Martin , Suzy Strickler , Akihiko Oka , Jeremy Herzog , Bo Liu , Scot E Dowd , Curtis Huttenhower , Matthieu Pichaud , Esra I Dogan , Jack Satsangi , Randy Longman , Rhonda Yantiss , Lukas A Mueller , Ellen J Scherl , R Balfour Sartor , Kenneth W Simpson

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data.

Bioinformatics (Oxford, England)

Avec: Florian Plaza Oñate , Emmanuelle Le Chatelier , Mathieu Almeida , Alessandra C L Cervino , Franck Gauthier , Frédéric Magoulès , S Dusko Ehrlich , Matthieu Pichaud

Réseau de co-auteurs

Hera Vlamakis 3 collaborations

Ramnik J Xavier 3 collaborations

Patrick Veiga 2 collaborations

Julien Tap 2 collaborations

Damian R Plichta 2 collaborations

Jeffrey A Porter 2 collaborations

Iñigo Oyarzun 1 collaboration

Boris Le Nevé 1 collaboration

Francisca Yañez 1 collaboration

Zixuan Xie 1 collaboration

Gerard Serrano-Gómez 1 collaboration

Joaquim Roca 1 collaboration

Fernando Azpiroz 1 collaboration

Chaysavanh Manichanh 1 collaboration

Franck Lejzerowicz 1 collaboration

Aurélie Cotillard 1 collaboration

Daniel McDonald 1 collaboration

Se Jin Song 1 collaboration

Rob Knight 1 collaboration

Muriel Derrien 1 collaboration

Juhi Somani 1 collaboration

Zachary S Wallace 1 collaboration

Ana D Fernandes 1 collaboration

Cory A Perugino 1 collaboration

Harri Lähdesmäki 1 collaboration

John H Stone 1 collaboration

Daniel C Chung 1 collaboration

Dinesh Khanna 1 collaboration

Shiv Pillai 1 collaboration

Eric M Brown 1 collaboration

Hugo Arellano-Santoyo 1 collaboration

Emily R Temple 1 collaboration

Zachary A Costliow 1 collaboration

A Brantley Hall 1 collaboration

Kai Liu 1 collaboration

Michael A Durney 1 collaboration

Xiebin Gu 1 collaboration

Clary A Clish 1 collaboration

Xiaobo Ke 1 collaboration

Kwontae You 1 collaboration

Henry J Haiser 1 collaboration

Daniel B Graham 1 collaboration

Shiying Zhang 1 collaboration

Xochitl Morgan 1 collaboration

Belgin Dogan 1 collaboration

Francois-Pierre Martin 1 collaboration

Suzy Strickler 1 collaboration

Akihiko Oka 1 collaboration

Jeremy Herzog 1 collaboration

Bo Liu 1 collaboration

Scot E Dowd 1 collaboration

Curtis Huttenhower 1 collaboration

Esra I Dogan 1 collaboration

Jack Satsangi 1 collaboration

Randy Longman 1 collaboration

Rhonda Yantiss 1 collaboration

Lukas A Mueller 1 collaboration

Ellen J Scherl 1 collaboration

R Balfour Sartor 1 collaboration

Kenneth W Simpson 1 collaboration

Florian Plaza Oñate 1 collaboration

Emmanuelle Le Chatelier 1 collaboration

Mathieu Almeida 1 collaboration

Alessandra C L Cervino 1 collaboration

Franck Gauthier 1 collaboration

Frédéric Magoulès 1 collaboration

S Dusko Ehrlich 1 collaboration