Michael E Pfrender

Affiliations

Department of Biological Sciences and Environmental Change Initiative, University of Notre Dame, Notre Dame, Indiana.

Publications (18)

Genome-Wide Allele-Specific Expression in Obligately Asexual Daphnia pulex and the Implications for the Genetic Basis of Asexuality.

Genome biology and evolution

Avec: Zhiqiang Ye , Xiaoqian Jiang , Michael E Pfrender , Michael Lynch

Global invasion history of the agricultural pest butterfly

Proceedings of the National Academy of Sciences of the United States of America

Avec: Sean F Ryan , Eric Lombaert , Anne Espeset , Roger Vila , Gerard Talavera , Vlad Dincă , Meredith M Doellman , Mark A Renshaw , Matthew W Eng , Emily A Hornett , Yiyuan Li , Michael E Pfrender , DeWayne Shoemaker

The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibian.

BMC evolutionary biology

Avec: Simon T Maddock , Ronald A Nussbaum , Julia J Day , Leigh Latta , Mark Miller , Debra L Fisk , Mark Wilkinson , Sara Rocha , David J Gower , Michael E Pfrender

Combining natural language processing and metabarcoding to reveal pathogen-environment associations.

PLoS neglected tropical diseases

Avec: David C Molik , DeAndre Tomlinson , Shane Davitt , Eric L Morgan , Matthew Sisk , Benjamin Roche , Natalie Meyers , Michael E Pfrender

Environment and shipping drive environmental DNA beta-diversity among commercial ports.

Molecular ecology

Avec: Jose Andrés , Paul Czechowski , Erin Grey , Mandana Saebi , Kara Andres , Christopher Brown , Nitesh Chawla , James J Corbett , Rein Brys , Phillip Cassey , Nancy Correa , Marty R Deveney , Scott P Egan , Joshua P Fisher , Rian Vanden Hooff , Charles R Knapp , Sandric Chee Yew Leong , Brian J Neilson , Esteban M Paolucci , Michael E Pfrender , Meredith R Pochardt , Thomas A A Prowse , Steven S Rumrill , Chris Scianni , Francisco Sylvester , Mario N Tamburri , Thomas W Therriault , Darren C J Yeo , David M Lodge

Author Correction: Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys.

Scientific reports

Avec: Erin K Grey , Louis Bernatchez , Phillip Cassey , Kristy Deiner , Marty Deveney , Kimberly L Howland , Anaïs Lacoursière-Roussel , Sandric Chee Yew Leong , Yiyuan Li , Brett Olds , Michael E Pfrender , Thomas A A Prowse , Mark A Renshaw , David M Lodge

SARS-CoV-2 Variant Tracking and Mitigation During In-Person Learning at a Midwestern University in the 2020-2021 School Year.

JAMA network open

Avec: Carolina Avendano , Aaron Lilienfeld , Liz Rulli , Melissa Stephens , Wendy Alvarez Barrios , Joseph Sarro , Michael E Pfrender , Marie Lynn Miranda

Evolutionary Insights from a Large-Scale Survey of Population-Genomic Variation.

Molecular biology and evolution

Avec: Zhiqiang Ye , Wen Wei , Michael E Pfrender , Michael Lynch

Rapid evolution of mitochondrion-related genes in haplodiploid arthropods.

BMC biology

Avec: Yiyuan Li , Gregg W C Thomas , Stephen Richards , Robert M Waterhouse , Xin Zhou , Michael E Pfrender

The geographic mosaic in parallel: Matching patterns of newt tetrodotoxin levels and snake resistance in multiple predator-prey pairs.

The Journal of animal ecology

Avec: Jessica S Reimche , Edmund D Brodie , Amber N Stokes , Erica J Ely , Haley A Moniz , Vicki L Thill , Joshua M Hallas , Michael E Pfrender , Edmund D Brodie , Chris R Feldman

Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis.

Methods and protocols

Avec: David C Molik , Michael E Pfrender , Scott J Emrich

The road not taken: Evolution of tetrodotoxin resistance in the Sierra garter snake (Thamnophis couchii) by a path less travelled.

Molecular ecology

Avec: Jessica S Reimche , Robert E Del Carlo , Edmund D Brodie , Joel W McGlothlin , Karen Schlauch , Michael E Pfrender , Edmund D Brodie , Normand Leblanc , Chris R Feldman

A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.

BMC genomics

Avec: Jouni Kvist , Camila Gonçalves Athanàsio , Michael E Pfrender , James B Brown , John K Colbourne , Leda Mirbahai

Gene content evolution in the arthropods.

Genome biology

Avec: Gregg W C Thomas , Elias Dohmen , Daniel S T Hughes , Shwetha C Murali , Monica Poelchau , Karl Glastad , Clare A Anstead , Nadia A Ayoub , Phillip Batterham , Michelle Bellair , Greta J Binford , Hsu Chao , Yolanda H Chen , Christopher Childers , Huyen Dinh , Harsha Vardhan Doddapaneni , Jian J Duan , Shannon Dugan , Lauren A Esposito , Markus Friedrich , Jessica Garb , Robin B Gasser , Michael A D Goodisman , Dawn E Gundersen-Rindal , Yi Han , Alfred M Handler , Masatsugu Hatakeyama , Lars Hering , Wayne B Hunter , Panagiotis Ioannidis , Joy C Jayaseelan , Divya Kalra , Abderrahman Khila , Pasi K Korhonen , Carol Eunmi Lee , Sandra L Lee , Yiyuan Li , Amelia R I Lindsey , Georg Mayer , Alistair P McGregor , Duane D McKenna , Bernhard Misof , Mala Munidasa , Monica Munoz-Torres , Donna M Muzny , Oliver Niehuis , Nkechinyere Osuji-Lacy , Subba R Palli , Kristen A Panfilio , Matthias Pechmann , Trent Perry , Ralph S Peters , Helen C Poynton , Nikola-Michael Prpic , Jiaxin Qu , Dorith Rotenberg , Coby Schal , Sean D Schoville , Erin D Scully , Evette Skinner , Daniel B Sloan , Richard Stouthamer , Michael R Strand , Nikolaus U Szucsich , Asela Wijeratne , Neil D Young , Eduardo E Zattara , Joshua B Benoit , Evgeny M Zdobnov , Michael E Pfrender , Kevin J Hackett , John H Werren , Kim C Worley , Richard A Gibbs , Ariel D Chipman , Robert M Waterhouse , Erich Bornberg-Bauer , Matthew W Hahn , Stephen Richards

A Seed-Endophytic

Frontiers in microbiology

Avec: Jeanne Romero-Severson , Thomas E Moran , Donna G Shrader , Francisco R Fields , Susan Pandey-Joshi , Clayton L Thomas , Emily C Palmer , Joshua D Shrout , Michael E Pfrender , Shaun W Lee

Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling.

Microbiology spectrum

Avec: T Alex Perkins , Melissa Stephens , Wendy Alvarez Barrios , Sean Cavany , Liz Rulli , Michael E Pfrender

Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.

BMC medical genomics

Avec: Yuanhang Liu , Aditya Bhagwate , Stacey J Winham , Melissa T Stephens , Brent W Harker , Samantha J McDonough , Melody L Stallings-Mann , Ethan P Heinzen , Robert A Vierkant , Tanya L Hoskin , Marlene H Frost , Jodi M Carter , Michael E Pfrender , Laurie Littlepage , Derek C Radisky , Julie M Cunningham , Amy C Degnim , Chen Wang

Evolutionary Genomics of Sister Species Differing in Effective Population Sizes and Recombination Rates.

Genome biology and evolution

Avec: Zhiqiang Ye , Michael E Pfrender , Michael Lynch

Réseau de co-auteurs

Yiyuan Li 4 collaborations

Edmund D Brodie 4 collaborations

Zhiqiang Ye 3 collaborations

Michael Lynch 3 collaborations

Mark A Renshaw 2 collaborations

David C Molik 2 collaborations

Phillip Cassey 2 collaborations

Sandric Chee Yew Leong 2 collaborations

Thomas A A Prowse 2 collaborations

David M Lodge 2 collaborations

Liz Rulli 2 collaborations

Melissa Stephens 2 collaborations

Wendy Alvarez Barrios 2 collaborations

Gregg W C Thomas 2 collaborations

Stephen Richards 2 collaborations

Robert M Waterhouse 2 collaborations

Jessica S Reimche 2 collaborations

Chris R Feldman 2 collaborations

Xiaoqian Jiang 1 collaboration

Sean F Ryan 1 collaboration

Eric Lombaert 1 collaboration

Anne Espeset 1 collaboration

Roger Vila 1 collaboration

Gerard Talavera 1 collaboration

Vlad Dincă 1 collaboration

Meredith M Doellman 1 collaboration

Matthew W Eng 1 collaboration

Emily A Hornett 1 collaboration

DeWayne Shoemaker 1 collaboration

Simon T Maddock 1 collaboration

Ronald A Nussbaum 1 collaboration

Julia J Day 1 collaboration

Leigh Latta 1 collaboration

Mark Miller 1 collaboration

Debra L Fisk 1 collaboration

Mark Wilkinson 1 collaboration

Sara Rocha 1 collaboration

David J Gower 1 collaboration

DeAndre Tomlinson 1 collaboration

Shane Davitt 1 collaboration

Eric L Morgan 1 collaboration

Matthew Sisk 1 collaboration

Benjamin Roche 1 collaboration

Natalie Meyers 1 collaboration

Jose Andrés 1 collaboration

Paul Czechowski 1 collaboration

Erin Grey 1 collaboration

Mandana Saebi 1 collaboration

Kara Andres 1 collaboration

Christopher Brown 1 collaboration

Nitesh Chawla 1 collaboration

James J Corbett 1 collaboration

Rein Brys 1 collaboration

Nancy Correa 1 collaboration

Marty R Deveney 1 collaboration

Scott P Egan 1 collaboration

Joshua P Fisher 1 collaboration

Rian Vanden Hooff 1 collaboration

Charles R Knapp 1 collaboration

Brian J Neilson 1 collaboration

Esteban M Paolucci 1 collaboration

Meredith R Pochardt 1 collaboration

Steven S Rumrill 1 collaboration

Chris Scianni 1 collaboration

Francisco Sylvester 1 collaboration

Mario N Tamburri 1 collaboration

Thomas W Therriault 1 collaboration

Darren C J Yeo 1 collaboration

Erin K Grey 1 collaboration

Louis Bernatchez 1 collaboration

Kristy Deiner 1 collaboration

Marty Deveney 1 collaboration

Kimberly L Howland 1 collaboration

Anaïs Lacoursière-Roussel 1 collaboration

Brett Olds 1 collaboration

Carolina Avendano 1 collaboration

Aaron Lilienfeld 1 collaboration

Joseph Sarro 1 collaboration

Marie Lynn Miranda 1 collaboration

Wen Wei 1 collaboration

Xin Zhou 1 collaboration

Amber N Stokes 1 collaboration

Erica J Ely 1 collaboration

Haley A Moniz 1 collaboration

Vicki L Thill 1 collaboration

Joshua M Hallas 1 collaboration

Scott J Emrich 1 collaboration

Robert E Del Carlo 1 collaboration

Joel W McGlothlin 1 collaboration

Karen Schlauch 1 collaboration

Normand Leblanc 1 collaboration

Jouni Kvist 1 collaboration

Camila Gonçalves Athanàsio 1 collaboration

James B Brown 1 collaboration

John K Colbourne 1 collaboration

Leda Mirbahai 1 collaboration

Elias Dohmen 1 collaboration

Daniel S T Hughes 1 collaboration

Shwetha C Murali 1 collaboration

Monica Poelchau 1 collaboration

Karl Glastad 1 collaboration

Clare A Anstead 1 collaboration

Nadia A Ayoub 1 collaboration

Phillip Batterham 1 collaboration

Michelle Bellair 1 collaboration

Greta J Binford 1 collaboration

Hsu Chao 1 collaboration

Yolanda H Chen 1 collaboration

Christopher Childers 1 collaboration

Huyen Dinh 1 collaboration

Harsha Vardhan Doddapaneni 1 collaboration

Jian J Duan 1 collaboration

Shannon Dugan 1 collaboration

Lauren A Esposito 1 collaboration

Markus Friedrich 1 collaboration

Jessica Garb 1 collaboration

Robin B Gasser 1 collaboration

Michael A D Goodisman 1 collaboration

Dawn E Gundersen-Rindal 1 collaboration

Yi Han 1 collaboration

Alfred M Handler 1 collaboration

Masatsugu Hatakeyama 1 collaboration

Lars Hering 1 collaboration

Wayne B Hunter 1 collaboration

Panagiotis Ioannidis 1 collaboration

Joy C Jayaseelan 1 collaboration

Divya Kalra 1 collaboration

Abderrahman Khila 1 collaboration

Pasi K Korhonen 1 collaboration

Carol Eunmi Lee 1 collaboration

Sandra L Lee 1 collaboration

Amelia R I Lindsey 1 collaboration

Georg Mayer 1 collaboration

Alistair P McGregor 1 collaboration

Duane D McKenna 1 collaboration

Bernhard Misof 1 collaboration

Mala Munidasa 1 collaboration

Monica Munoz-Torres 1 collaboration

Donna M Muzny 1 collaboration

Oliver Niehuis 1 collaboration

Nkechinyere Osuji-Lacy 1 collaboration

Subba R Palli 1 collaboration

Kristen A Panfilio 1 collaboration

Matthias Pechmann 1 collaboration

Trent Perry 1 collaboration

Ralph S Peters 1 collaboration

Helen C Poynton 1 collaboration

Nikola-Michael Prpic 1 collaboration

Jiaxin Qu 1 collaboration

Dorith Rotenberg 1 collaboration

Coby Schal 1 collaboration

Sean D Schoville 1 collaboration

Erin D Scully 1 collaboration

Evette Skinner 1 collaboration

Daniel B Sloan 1 collaboration

Richard Stouthamer 1 collaboration

Michael R Strand 1 collaboration

Nikolaus U Szucsich 1 collaboration

Asela Wijeratne 1 collaboration

Neil D Young 1 collaboration

Eduardo E Zattara 1 collaboration

Joshua B Benoit 1 collaboration

Evgeny M Zdobnov 1 collaboration

Kevin J Hackett 1 collaboration

John H Werren 1 collaboration

Kim C Worley 1 collaboration

Richard A Gibbs 1 collaboration

Ariel D Chipman 1 collaboration

Erich Bornberg-Bauer 1 collaboration

Matthew W Hahn 1 collaboration

Jeanne Romero-Severson 1 collaboration

Thomas E Moran 1 collaboration

Donna G Shrader 1 collaboration

Francisco R Fields 1 collaboration

Susan Pandey-Joshi 1 collaboration

Clayton L Thomas 1 collaboration

Emily C Palmer 1 collaboration

Joshua D Shrout 1 collaboration

Shaun W Lee 1 collaboration

T Alex Perkins 1 collaboration

Sean Cavany 1 collaboration

Yuanhang Liu 1 collaboration

Aditya Bhagwate 1 collaboration

Stacey J Winham 1 collaboration

Melissa T Stephens 1 collaboration

Brent W Harker 1 collaboration

Samantha J McDonough 1 collaboration

Melody L Stallings-Mann 1 collaboration

Ethan P Heinzen 1 collaboration

Robert A Vierkant 1 collaboration

Tanya L Hoskin 1 collaboration

Marlene H Frost 1 collaboration

Jodi M Carter 1 collaboration

Laurie Littlepage 1 collaboration

Derek C Radisky 1 collaboration

Julie M Cunningham 1 collaboration

Amy C Degnim 1 collaboration

Chen Wang 1 collaboration