Michael Hackenberg

Affiliations

Department of Genetics, Faculty of Science, University of Granada, 18071 Granada, Spain.
Bioinformatics Laboratory, Biotechnology Institute, Centro de Investigación Biomédica, PTS, Avda. del Conocimiento s/n, 18100-Granada. Spain.
Instituto de Investigación Biosanitaria ibs.GRANADA, University of Granada, 18071 Granada, Spain.
Excellence Research Unit "Modelling Nature" (MNat), University of Granada, 18071 Granada, Spain.

Publications (19)

mirnaQC: a webserver for comparative quality control of miRNA-seq data.

Nucleic acids research

Avec: Ernesto Aparicio-Puerta , Cristina Gómez-Martín , Stavros Giannoukakos , José María Medina , Juan Antonio Marchal , Michael Hackenberg

Transcriptional Dynamics and Candidate Genes Involved in Pod Maturation of Common Bean (

Plants (Basel, Switzerland)

Avec: Cristina Gómez-Martín , Carmen Capel , Ana M González , Ricardo Lebrón , Fernando J Yuste-Lisbona , Michael Hackenberg , José L Oliver , Marta Santalla , Rafael Lozano

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.

Bioinformatics (Oxford, England)

Avec: Thomas Desvignes , Phillipe Loher , Karen Eilbeck , Jeffery Ma , Gianvito Urgese , Bastian Fromm , Jason Sydes , Ernesto Aparicio-Puerta , Victor Barrera , Roderic Espín , Florian Thibord , Xavier Bofill-De Ros , Eric Londin , Aristeidis G Telonis , Elisa Ficarra , Marc R Friedländer , John H Postlethwait , Isidore Rigoutsos , Michael Hackenberg , Ioannis S Vlachos , Marc K Halushka , Lorena Pantano

geno

Journal of molecular biology

Avec: C Gómez-Martín , E Aparicio-Puerta , J M Medina , Guillermo Barturen , J L Oliver , M Hackenberg

Extracellular vesicle miRNA predict FDG-PET status in patients with classical Hodgkin Lymphoma.

Journal of extracellular vesicles

Avec: Esther E E Drees , Margaretha G M Roemer , Nils J Groenewegen , Jennifer Perez-Boza , Monique A J van Eijndhoven , Leah I Prins , Sandra A W M Verkuijlen , Xuan-Mai Tran , Julia Driessen , G J C Zwezerijnen , Phylicia Stathi , Kevin Mol , Joey J J P Karregat , Aikaterini Kalantidou , Andrea Vallés-Martí , T J Molenaar , Ernesto Aparicio-Puerta , Erik van Dijk , Bauke Ylstra , Catharina G M Groothuis-Oudshoorn , Michael Hackenberg , Daphne de Jong , Josée M Zijlstra , D Michiel Pegtel

Digital multiplexed analysis of circular RNAs in FFPE and fresh non-small cell lung cancer specimens.

Molecular oncology

Avec: Carlos Pedraz-Valdunciel , Stavros Giannoukakos , Nicolas Potie , Ana Giménez-Capitán , Chung-Ying Huang , Michael Hackenberg , Alberto Fernandez-Hilario , Jill Bracht , Martyna Filipska , Erika Aldeguer , Sonia Rodríguez , Trever G Bivona , Sarah Warren , Cristina Aguado , Masaoki Ito , Andrés Aguilar-Hernández , Miguel Angel Molina-Vila , Rafael Rosell

Comprehensive, integrative genomic analysis of microRNA expression profiles in different tissues of two wheat cultivars with different traits.

Functional & integrative genomics

Avec: Cristina Gómez-Martín , Hui Zhou , José Maria Medina , Ernesto Aparicio-Puerta , Michael Hackenberg , Bujun Shi

The limits of human microRNA annotation have been met.

RNA (New York, N.Y.)

Avec: Bastian Fromm , Xiangfu Zhong , Marcel Tarbier , Marc R Friedländer , Michael Hackenberg

IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolution.

STAR protocols

Avec: Monique A J van Eijndhoven , Chantal Scheepbouwer , Ernesto Aparicio-Puerta , Michael Hackenberg , D Michiel Pegtel

Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions.

Biomolecules

Avec: Cristina Gómez-Martín , Hui Zhou , José María Medina , Ernesto Aparicio-Puerta , Bujun Shi , Michael Hackenberg

NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods.

Nucleic acids research

Avec: Chantal Scheepbouwer , Michael Hackenberg , Monique A J van Eijndhoven , Alan Gerber , Michiel Pegtel , Cristina Gómez-Martín

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies.

Nucleic acids research

Avec: Ernesto Aparicio-Puerta , David Jáspez , Ricardo Lebrón , Danijela Koppers-Lalic , Juan A Marchal , Michael Hackenberg

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.

Nucleic acids research

Avec: Ernesto Aparicio-Puerta , Ricardo Lebrón , Antonio Rueda , Cristina Gómez-Martín , Stavros Giannoukakos , David Jaspez , José María Medina , Andreja Zubkovic , Igor Jurak , Bastian Fromm , Juan Antonio Marchal , José Oliver , Michael Hackenberg

MirGeneDB 2.0: the metazoan microRNA complement.

Nucleic acids research

Avec: Bastian Fromm , Diana Domanska , Eirik Høye , Vladimir Ovchinnikov , Wenjing Kang , Ernesto Aparicio-Puerta , Morten Johansen , Kjersti Flatmark , Anthony Mathelier , Eivind Hovig , Michael Hackenberg , Marc R Friedländer , Kevin J Peterson

MirGeneDB 2.1: toward a complete sampling of all major animal phyla.

Nucleic acids research

Avec: Bastian Fromm , Eirik Høye , Diana Domanska , Xiangfu Zhong , Ernesto Aparicio-Puerta , Vladimir Ovchinnikov , Sinan U Umu , Peter J Chabot , Wenjing Kang , Morteza Aslanzadeh , Marcel Tarbier , Emilio Mármol-Sánchez , Gianvito Urgese , Morten Johansen , Eivind Hovig , Michael Hackenberg , Marc R Friedländer , Kevin J Peterson

In Silico Analysis of Micro-RNA Sequencing Data.

Methods in molecular biology (Clifton, N.J.)

Avec: Ernesto Aparicio-Puerta , Bastian Fromm , Michael Hackenberg , Marc K Halushka

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.

Nucleic acids research

Avec: Ernesto Aparicio-Puerta , Cristina Gómez-Martín , Stavros Giannoukakos , José María Medina , Chantal Scheepbouwer , Adrián García-Moreno , Pedro Carmona-Saez , Bastian Fromm , Michiel Pegtel , Andreas Keller , Juan Antonio Marchal , Michael Hackenberg

The Virus-Induced Upregulation of the miR-183/96/182 Cluster and the FoxO Family Protein Members Are Not Required for Efficient Replication of HSV-1.

Viruses

Avec: Andreja Zubković , Ines Žarak , Ivana Ratkaj , Filip Rokić , Maja Jekić , Marina Pribanić Matešić , Ricardo Lebrón , Cristina Gómez-Martín , Berislav Lisnić , Vanda Juranić Lisnić , Stipan Jonjić , Dongli Pan , Oliver Vugrek , Michael Hackenberg , Igor Jurak

Multiplex Analysis of CircRNAs from Plasma Extracellular Vesicle-Enriched Samples for the Detection of Early-Stage Non-Small Cell Lung Cancer.

Pharmaceutics

Avec: Carlos Pedraz-Valdunciel , Stavros Giannoukakos , Ana Giménez-Capitán , Diogo Fortunato , Martyna Filipska , Jordi Bertran-Alamillo , Jillian W P Bracht , Ana Drozdowskyj , Joselyn Valarezo , Natasa Zarovni , Alberto Fernández-Hilario , Michael Hackenberg , Andrés Aguilar-Hernández , Miguel Ángel Molina-Vila , Rafael Rosell

Réseau de co-auteurs

Ernesto Aparicio-Puerta 12 collaborations

Cristina Gómez-Martín 8 collaborations

Bastian Fromm 7 collaborations

Stavros Giannoukakos 5 collaborations

José María Medina 4 collaborations

Ricardo Lebrón 4 collaborations

Marc R Friedländer 4 collaborations

Juan Antonio Marchal 3 collaborations

Monique A J van Eijndhoven 3 collaborations

Chantal Scheepbouwer 3 collaborations

Gianvito Urgese 2 collaborations

Marc K Halushka 2 collaborations

D Michiel Pegtel 2 collaborations

Carlos Pedraz-Valdunciel 2 collaborations

Ana Giménez-Capitán 2 collaborations

Martyna Filipska 2 collaborations

Andrés Aguilar-Hernández 2 collaborations

Rafael Rosell 2 collaborations

Hui Zhou 2 collaborations

Bujun Shi 2 collaborations

Xiangfu Zhong 2 collaborations

Marcel Tarbier 2 collaborations

Michiel Pegtel 2 collaborations

Igor Jurak 2 collaborations

Diana Domanska 2 collaborations

Eirik Høye 2 collaborations

Vladimir Ovchinnikov 2 collaborations

Wenjing Kang 2 collaborations

Morten Johansen 2 collaborations

Eivind Hovig 2 collaborations

Kevin J Peterson 2 collaborations

Carmen Capel 1 collaboration

Ana M González 1 collaboration

Fernando J Yuste-Lisbona 1 collaboration

José L Oliver 1 collaboration

Marta Santalla 1 collaboration

Rafael Lozano 1 collaboration

Thomas Desvignes 1 collaboration

Phillipe Loher 1 collaboration

Karen Eilbeck 1 collaboration

Jeffery Ma 1 collaboration

Jason Sydes 1 collaboration

Victor Barrera 1 collaboration

Roderic Espín 1 collaboration

Florian Thibord 1 collaboration

Xavier Bofill-De Ros 1 collaboration

Eric Londin 1 collaboration

Aristeidis G Telonis 1 collaboration

Elisa Ficarra 1 collaboration

John H Postlethwait 1 collaboration

Isidore Rigoutsos 1 collaboration

Ioannis S Vlachos 1 collaboration

Lorena Pantano 1 collaboration

C Gómez-Martín 1 collaboration

E Aparicio-Puerta 1 collaboration

J M Medina 1 collaboration

Guillermo Barturen 1 collaboration

J L Oliver 1 collaboration

M Hackenberg 1 collaboration

Esther E E Drees 1 collaboration

Margaretha G M Roemer 1 collaboration

Nils J Groenewegen 1 collaboration

Jennifer Perez-Boza 1 collaboration

Leah I Prins 1 collaboration

Sandra A W M Verkuijlen 1 collaboration

Xuan-Mai Tran 1 collaboration

Julia Driessen 1 collaboration

G J C Zwezerijnen 1 collaboration

Phylicia Stathi 1 collaboration

Kevin Mol 1 collaboration

Joey J J P Karregat 1 collaboration

Aikaterini Kalantidou 1 collaboration

Andrea Vallés-Martí 1 collaboration

T J Molenaar 1 collaboration

Erik van Dijk 1 collaboration

Bauke Ylstra 1 collaboration

Catharina G M Groothuis-Oudshoorn 1 collaboration

Daphne de Jong 1 collaboration

Josée M Zijlstra 1 collaboration

Nicolas Potie 1 collaboration

Chung-Ying Huang 1 collaboration

Alberto Fernandez-Hilario 1 collaboration

Jill Bracht 1 collaboration

Erika Aldeguer 1 collaboration

Sonia Rodríguez 1 collaboration

Trever G Bivona 1 collaboration

Sarah Warren 1 collaboration

Cristina Aguado 1 collaboration

Masaoki Ito 1 collaboration

Miguel Angel Molina-Vila 1 collaboration

José Maria Medina 1 collaboration

Alan Gerber 1 collaboration

David Jáspez 1 collaboration

Danijela Koppers-Lalic 1 collaboration

Juan A Marchal 1 collaboration

Antonio Rueda 1 collaboration

David Jaspez 1 collaboration

Andreja Zubkovic 1 collaboration

José Oliver 1 collaboration

Kjersti Flatmark 1 collaboration

Anthony Mathelier 1 collaboration

Sinan U Umu 1 collaboration

Peter J Chabot 1 collaboration

Morteza Aslanzadeh 1 collaboration

Emilio Mármol-Sánchez 1 collaboration

Adrián García-Moreno 1 collaboration

Pedro Carmona-Saez 1 collaboration

Andreas Keller 1 collaboration

Andreja Zubković 1 collaboration

Ines Žarak 1 collaboration

Ivana Ratkaj 1 collaboration

Filip Rokić 1 collaboration

Maja Jekić 1 collaboration

Marina Pribanić Matešić 1 collaboration

Berislav Lisnić 1 collaboration

Vanda Juranić Lisnić 1 collaboration

Stipan Jonjić 1 collaboration

Dongli Pan 1 collaboration

Oliver Vugrek 1 collaboration

Diogo Fortunato 1 collaboration

Jordi Bertran-Alamillo 1 collaboration

Jillian W P Bracht 1 collaboration

Ana Drozdowskyj 1 collaboration

Joselyn Valarezo 1 collaboration

Natasa Zarovni 1 collaboration

Alberto Fernández-Hilario 1 collaboration

Miguel Ángel Molina-Vila 1 collaboration