Mikhail Rayko

Affiliations

Center for Algorithmic Biotechnology, St. Petersburg State University, 199004 Saint-Petersburg, Russia.

Publications (12)

Balamuthia spinosa n. sp. (Amoebozoa, Discosea) from the brackish-water sediments of Nivå Bay (Baltic Sea, The Sound) - a novel potential vector of Legionella pneumophila in the environment.

Parasitology research

Avec: K Lotonin , N Bondarenko , E Nassonova , M Rayko , A Smirnov

White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Nicholas J Marra , Michael J Stanhope , Nathaniel K Jue , Minghui Wang , Qi Sun , Paulina Pavinski Bitar , Vincent P Richards , Aleksey Komissarov , Mike Rayko , Sergey Kliver , Bryce J Stanhope , Chuck Winkler , Stephen J O'Brien , Agostinho Antunes , Salvador Jorgensen , Mahmood S Shivji

Fungal Metagenome of Chernevaya Taiga Soils: Taxonomic Composition, Differential Abundance and Factors Related to Plant Gigantism.

Journal of fungi (Basel, Switzerland)

Avec: Mikhail Rayko , Sophie Sokornova , Alla Lapidus

metaFlye: scalable long-read metagenome assembly using repeat graphs.

Nature methods

Avec: Mikhail Kolmogorov , Derek M Bickhart , Bahar Behsaz , Alexey Gurevich , Mikhail Rayko , Sung Bong Shin , Kristen Kuhn , Jeffrey Yuan , Evgeny Polevikov , Timothy P L Smith , Pavel A Pevzner

Phylogenetic and Expression Analysis of

Plants (Basel, Switzerland)

Avec: Evgeny Bakin , Fatih Sezer , Aslıhan Özbilen , Irem Kilic , Buket Uner , Mike Rayko , Kemal Melih Taskin , Vladimir Brukhin

Thousands of previously unknown phages discovered in whole-community human gut metagenomes.

Microbiome

Avec: Sean Benler , Natalya Yutin , Dmitry Antipov , Mikhail Rayko , Sergey Shmakov , Ayal B Gussow , Pavel Pevzner , Eugene V Koonin

Analysis of rhizosphere fungal community of agricultural crops cultivated in laboratory experiments on Chernevaya taiga soil.

World journal of microbiology & biotechnology

Avec: Irina Kravchenko , Mikhail Rayko , Sophie Sokornova , Ekaterina Tikhonova , Aleksey Konopkin , Alla Lapidus

Agricultural Crops Grown in Laboratory Conditions on Chernevaya Taiga Soil Demonstrate Unique Composition of the Rhizosphere Microbiota.

Microorganisms

Avec: Irina Kravchenko , Mikhail Rayko , Ekaterina Tikhonova , Aleksey Konopkin , Evgeny Abakumov , Alla Lapidus

Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines.

Scientific data

Avec: Mikhail Rayko , Aleksey Komissarov , Jason C Kwan , Grace Lim-Fong , Adelaide C Rhodes , Sergey Kliver , Polina Kuchur , Stephen J O'Brien , Jose V Lopez

Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features.

Nature communications

Avec: Natalya Yutin , Sean Benler , Sergei A Shmakov , Yuri I Wolf , Igor Tolstoy , Mike Rayko , Dmitry Antipov , Pavel A Pevzner , Eugene V Koonin

viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.

Genome biology

Avec: Dmitry Antipov , Mikhail Rayko , Mikhail Kolmogorov , Pavel A Pevzner

Varidnaviruses in the Human Gut: A Major Expansion of the Order

Viruses

Avec: Natalya Yutin , Mike Rayko , Dmitry Antipov , Pascal Mutz , Yuri I Wolf , Mart Krupovic , Eugene V Koonin

Réseau de co-auteurs

Mike Rayko 4 collaborations

Dmitry Antipov 4 collaborations

Alla Lapidus 3 collaborations

Pavel A Pevzner 3 collaborations

Natalya Yutin 3 collaborations

Eugene V Koonin 3 collaborations

Aleksey Komissarov 2 collaborations

Sergey Kliver 2 collaborations

Stephen J O'Brien 2 collaborations

Sophie Sokornova 2 collaborations

Mikhail Kolmogorov 2 collaborations

Sean Benler 2 collaborations

Irina Kravchenko 2 collaborations

Ekaterina Tikhonova 2 collaborations

Aleksey Konopkin 2 collaborations

Yuri I Wolf 2 collaborations

K Lotonin 1 collaboration

N Bondarenko 1 collaboration

E Nassonova 1 collaboration

M Rayko 1 collaboration

A Smirnov 1 collaboration

Nicholas J Marra 1 collaboration

Michael J Stanhope 1 collaboration

Nathaniel K Jue 1 collaboration

Minghui Wang 1 collaboration

Qi Sun 1 collaboration

Paulina Pavinski Bitar 1 collaboration

Vincent P Richards 1 collaboration

Bryce J Stanhope 1 collaboration

Chuck Winkler 1 collaboration

Agostinho Antunes 1 collaboration

Salvador Jorgensen 1 collaboration

Mahmood S Shivji 1 collaboration

Derek M Bickhart 1 collaboration

Bahar Behsaz 1 collaboration

Alexey Gurevich 1 collaboration

Sung Bong Shin 1 collaboration

Kristen Kuhn 1 collaboration

Jeffrey Yuan 1 collaboration

Evgeny Polevikov 1 collaboration

Timothy P L Smith 1 collaboration

Evgeny Bakin 1 collaboration

Fatih Sezer 1 collaboration

Aslıhan Özbilen 1 collaboration

Irem Kilic 1 collaboration

Buket Uner 1 collaboration

Kemal Melih Taskin 1 collaboration

Vladimir Brukhin 1 collaboration

Sergey Shmakov 1 collaboration

Ayal B Gussow 1 collaboration

Pavel Pevzner 1 collaboration

Evgeny Abakumov 1 collaboration

Jason C Kwan 1 collaboration

Grace Lim-Fong 1 collaboration

Adelaide C Rhodes 1 collaboration

Polina Kuchur 1 collaboration

Jose V Lopez 1 collaboration

Sergei A Shmakov 1 collaboration

Igor Tolstoy 1 collaboration

Pascal Mutz 1 collaboration

Mart Krupovic 1 collaboration